4ZUXV

Saga dub module ubp8/sgf11/sus1/sgf73 bound to ubiqitinated nucleosome
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
89
structure length
89
Chain Sequence
TAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords Histone H3.2
publication title Structural basis for histone H2B deubiquitination by the SAGA DUB module.
pubmed doi rcsb
source organism Xenopus laevis
total genus 34
structure length 89
sequence length 89
chains with identical sequence a, f, k
ec nomenclature
pdb deposition date 2015-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF10163 EnY2 Transcription factor e(y)2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.140 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4zuxV00
3FWCC 4FK5B 4ZUXV 3MHHB 4W4UB 3MHSB 4MBEC 4FJCB 3M99C 4C31B 4DHXB 3KIKA 3FWBC 3KJLA 4WA6B 4FIPB
chains in the Genus database with same CATH superfamily
4LA0A 4F5UA 5IJEA 1MA9A 1TF0A 3UIVA 4DM0A 3A73A 4K2CA 2CKXA 2XVQA 4LUFA 2Z8KA 5HOZA 2BXNA 3NMUA 5IIUA 1MIVA 2DYOA 2EFDA 4S1YA 1TXUA 2XSIA 1BJ5A 4N3ZA 5ID9A 1MM8A 3GQXA 3NVKA 1GNJA 2BXKA 2I30A 1E7EA 2BXMA 4G01A 3LU8A 2QHBA 3SQJA 2VUFA 2BXIA 1H5WA 2I2ZA 4GDKB 4W4UB 4NAWB 4E99A 5ID7A 1VFIA 4L9KA 4ZC6A 3VQIA 4WA6B 1LNSA 4IW1A 2Z8IA 3B9MA 2DYMA 1KW2A 4LB9A 3MHSB 4M70B 1UORA 2QM6A 4PO0A 4Z9OA 5D7GA 4HGMB 3KIKA 5GINA 2KWFA 1HK4A 5IJ5A 4GDLB 4ZUXV 4D7XA 1KXPD 2BXDA 3V03A 5IFOA 1GNIA 1FOUA 1NT2B 2BXFA 4Z69A 3PLAA 3WHSA 3SIUB 3NVMA 4G03A 2E0YA 2LOQA 4L8UA 3H37A 1HA2A 3CX9A 5GIPA 3WHRA 4ZCGA 2LXTA 2XW1A 4TQ0A 5IJFA 2KBZA 2Z8JA 3ICXA 2JUHA 3JRYA 5IIHA 4OTTA 2ROHA 1E7AA 3JQZA 1BKEA 3GA9L 4OR0A 5GIOA 1E7CA 4IW2A 4N0FD 2BXLA 2DBXA 1JNBA 2YDFA 4BKEA 3WHQA 3B9LA 3SIVB 3W1SA 2BXAA 4ZBKA 1MUSA 4MBEC 5DQFA 1MUHA 2NNWA 1AO6A 3G9KD 3GQUA 2K0NA 1LOTA 4L9QA 1HK3A 2QMCA 2VDBA 2XW0A 2BXOA 2DBWA 3A75A 4LB2A 4G04A 4LUHA 4GDXA 1HK2A 1HK1A 2DG5A 4HGKA 1E7GA 3BPJA 2AGHB 2AJEA 2EFHA 2EFEA 2LQIA 1MIWA 4C31B 2BXHA 5FUOA 5IIXA 1O9XA 1J78A 2XMOA 3LU6A 1SB0A 4GG2A 2LQHA 1BM0A 2XVUA 3V09A 4F5TA 2BXPA 3NVIA 1E78A 3V08A 2BXCA 3H3AA 4EMXA 2EFCA 4K71A 2GUTA 3M99C 3LU7A 3FNMA 4FJCB 4F5VA 4BY9C 3KJLA 4F5SA 2E0XA 3FWCC 4FK5B 4OT2A 3MHHB 2V36A 1HK5A 3ECPA 3TDLA 2XVVA 1J7EA 2OZBB 1E7IA 4I9OA 4OTUA 5DBYA 1MIYA 2LXSA 2VUEA 1KDXA 4ZBQA 4JK4A 1IJGA 1E7BA 1N5UA 1E7FA 1H9ZA 3FWBC 1VZSA 4DHXB 4ZBRA 4FIPB 2BXEA 2BX8A 2BXBA 2BXGA 4J2VA 5B5TA 4N0UD 2XVWA 5BPKA 2OT3A 5GHKA 2BXQA 2NQOA 2DBUA 4TQ1A 1E7HA
chains in the Genus database with same CATH topology
4LA0A 4F5UA 5IJEA 1MA9A 1TF0A 3UIVA 3A73A 4K2CA 2CKXA 2XVQA 4LUFA 2Z8KA 5HOZA 2BXNA 3NMUA 5IIUA 1MIVA 2DYOA 2EFDA 4S1YA 1TXUA 2XSIA 1BJ5A 4N3ZA 5ID9A 3GQXA 3NVKA 1GNJA 2BXKA 2I30A 1E7EA 2BXMA 4G01A 3LU8A 2QHBA 3SQJA 2VUFA 2BXIA 1H5WA 2I2ZA 4GDKB 4W4UB 4NAWB 4E99A 5ID7A 1VFIA 4L9KA 4ZC6A 3VQIA 4WA6B 1LNSA 4IW1A 2Z8IA 3B9MA 2DYMA 1KW2A 4LB9A 3MHSB 4M70B 1UORA 2QM6A 4PO0A 4Z9OA 5D7GA 4HGMB 3KIKA 5GINA 1HK4A 5IJ5A 4GDLB 4ZUXV 1KXPD 2BXDA 3V03A 5IFOA 1GNIA 1FOUA 1NT2B 2BXFA 4Z69A 3PLAA 3WHSA 3SIUB 3NVMA 4G03A 2E0YA 2LOQA 4L8UA 3H37A 1HA2A 3CX9A 5GIPA 3WHRA 4ZCGA 2XW1A 4TQ0A 5IJFA 2KBZA 2Z8JA 3ICXA 2JUHA 3JRYA 5IIHA 4OTTA 2ROHA 1E7AA 3JQZA 1BKEA 3GA9L 4OR0A 5GIOA 1E7CA 4IW2A 4N0FD 2BXLA 2DBXA 1JNBA 2YDFA 4BKEA 3WHQA 3B9LA 3SIVB 3W1SA 2BXAA 4ZBKA 4MBEC 5DQFA 2NNWA 1AO6A 3G9KD 3GQUA 1LOTA 4L9QA 1HK3A 2QMCA 2VDBA 2XW0A 2BXOA 2DBWA 3A75A 4LB2A 4G04A 4LUHA 4GDXA 1HK2A 1HK1A 2DG5A 4HGKA 1E7GA 2AJEA 2EFHA 2EFEA 5IIXA 1MIWA 4C31B 2BXHA 5FUOA 1O9XA 1J78A 2XMOA 3LU6A 4GG2A 3V09A 1BM0A 2XVUA 4F5TA 2BXPA 3NVIA 1E78A 3V08A 2BXCA 3H3AA 4EMXA 2EFCA 4K71A 3M99C 3LU7A 3FNMA 4FJCB 4F5VA 4BY9C 3KJLA 4F5SA 2E0XA 3FWCC 4FK5B 4OT2A 3MHHB 2V36A 1HK5A 3TDLA 2XVVA 1J7EA 2OZBB 1E7IA 4OTUA 5DBYA 1MIYA 2VUEA 4ZBQA 4JK4A 1IJGA 1E7BA 1N5UA 1E7FA 1H9ZA 3FWBC 1VZSA 4DHXB 4ZBRA 4FIPB 2BXEA 2BX8A 2BXBA 2BXGA 4J2VA 5B5TA 4N0UD 2XVWA 5BPKA 2OT3A 5GHKA 2BXQA 2NQOA 2DBUA 4TQ1A 1E7HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FWC C;  4FK5 B;  4ZUX V;  3MHH B;  4W4U B;  3MHS B;  4MBE C;  4FJC B;  3M99 C;  4C31 B;  4DHX B;  3KIK A;  3FWB C;  3KJL A;  4WA6 B;  4FIP B; 
#chains in the Genus database with same CATH topology
 4LA0 A;  4F5U A;  5IJE A;  1MA9 A;  1TF0 A;  3UIV A;  4DM0 A;  3A73 A;  4K2C A;  2CKX A;  2XVQ A;  4LUF A;  2Z8K A;  5HOZ A;  2BXN A;  3NMU A;  5IIU A;  1MIV A;  2DYO A;  2EFD A;  4S1Y A;  1TXU A;  2XSI A;  1BJ5 A;  4N3Z A;  5ID9 A;  1MM8 A;  3GQX A;  3NVK A;  1GNJ A;  2BXK A;  2I30 A;  1E7E A;  2BXM A;  4G01 A;  3LU8 A;  2QHB A;  3SQJ A;  2VUF A;  2BXI A;  1H5W A;  2I2Z A;  4GDK B;  4W4U B;  4NAW B;  4E99 A;  5ID7 A;  1VFI A;  4L9K A;  4ZC6 A;  3VQI A;  4WA6 B;  1LNS A;  4IW1 A;  2Z8I A;  3B9M A;  2DYM A;  1KW2 A;  4LB9 A;  3MHS B;  4M70 B;  1UOR A;  2QM6 A;  4PO0 A;  4Z9O A;  5D7G A;  4HGM B;  3KIK A;  5GIN A;  2KWF A;  1HK4 A;  5IJ5 A;  4GDL B;  4ZUX V;  4D7X A;  1KXP D;  2BXD A;  3V03 A;  5IFO A;  1GNI A;  1FOU A;  1NT2 B;  2BXF A;  4Z69 A;  3PLA A;  3WHS A;  3SIU B;  3NVM A;  4G03 A;  2E0Y A;  2LOQ A;  4L8U A;  3H37 A;  1HA2 A;  3CX9 A;  5GIP A;  3WHR A;  4ZCG A;  2LXT A;  2XW1 A;  4TQ0 A;  5IJF A;  2KBZ A;  2Z8J A;  3ICX A;  2JUH A;  3JRY A;  5IIH A;  4OTT A;  2ROH A;  1E7A A;  3JQZ A;  1BKE A;  3GA9 L;  4OR0 A;  5GIO A;  1E7C A;  4IW2 A;  4N0F D;  2BXL A;  2DBX A;  1JNB A;  2YDF A;  4BKE A;  3WHQ A;  3B9L A;  3SIV B;  3W1S A;  2BXA A;  4ZBK A;  1MUS A;  4MBE C;  5DQF A;  1MUH A;  2NNW A;  1AO6 A;  3G9K D;  3GQU A;  2K0N A;  1LOT A;  4L9Q A;  1HK3 A;  2QMC A;  2VDB A;  2XW0 A;  2BXO A;  2DBW A;  3A75 A;  4LB2 A;  4G04 A;  4LUH A;  4GDX A;  1HK2 A;  1HK1 A;  2DG5 A;  4HGK A;  1E7G A;  3BPJ A;  2AGH B;  2AJE A;  2EFH A;  2EFE A;  2LQI A;  1MIW A;  4C31 B;  2BXH A;  5FUO A;  5IIX A;  1O9X A;  1J78 A;  2XMO A;  3LU6 A;  1SB0 A;  4GG2 A;  2LQH A;  1BM0 A;  2XVU A;  3V09 A;  4F5T A;  2BXP A;  3NVI A;  1E78 A;  3V08 A;  2BXC A;  3H3A A;  4EMX A;  2EFC A;  4K71 A;  2GUT A;  3M99 C;  3LU7 A;  3FNM A;  4FJC B;  4F5V A;  4BY9 C;  3KJL A;  4F5S A;  2E0X A;  3FWC C;  4FK5 B;  4OT2 A;  3MHH B;  2V36 A;  1HK5 A;  3ECP A;  3TDL A;  2XVV A;  1J7E A;  2OZB B;  1E7I A;  4I9O A;  4OTU A;  5DBY A;  1MIY A;  2LXS A;  2VUE A;  1KDX A;  4ZBQ A;  4JK4 A;  1IJG A;  1E7B A;  1N5U A;  1E7F A;  1H9Z A;  3FWB C;  1VZS A;  4DHX B;  4ZBR A;  4FIP B;  2BXE A;  2BX8 A;  2BXB A;  2BXG A;  4J2V A;  5B5T A;  4N0U D;  2XVW A;  5BPK A;  2OT3 A;  5GHK A;  2BXQ A;  2NQO A;  2DBU A;  4TQ1 A;  1E7H A; 
#chains in the Genus database with same CATH homology
 4LA0 A;  4F5U A;  5IJE A;  1MA9 A;  1TF0 A;  3UIV A;  3A73 A;  4K2C A;  2CKX A;  2XVQ A;  4LUF A;  2Z8K A;  5HOZ A;  2BXN A;  3NMU A;  5IIU A;  1MIV A;  2DYO A;  2EFD A;  4S1Y A;  1TXU A;  2XSI A;  1BJ5 A;  4N3Z A;  5ID9 A;  3GQX A;  3NVK A;  1GNJ A;  2BXK A;  2I30 A;  1E7E A;  2BXM A;  4G01 A;  3LU8 A;  2QHB A;  3SQJ A;  2VUF A;  2BXI A;  1H5W A;  2I2Z A;  4GDK B;  4W4U B;  4NAW B;  4E99 A;  5ID7 A;  1VFI A;  4L9K A;  4ZC6 A;  3VQI A;  4WA6 B;  1LNS A;  4IW1 A;  2Z8I A;  3B9M A;  2DYM A;  1KW2 A;  4LB9 A;  3MHS B;  4M70 B;  1UOR A;  2QM6 A;  4PO0 A;  4Z9O A;  5D7G A;  4HGM B;  3KIK A;  5GIN A;  1HK4 A;  5IJ5 A;  4GDL B;  4ZUX V;  1KXP D;  2BXD A;  3V03 A;  5IFO A;  1GNI A;  1FOU A;  1NT2 B;  2BXF A;  4Z69 A;  3PLA A;  3WHS A;  3SIU B;  3NVM A;  4G03 A;  2E0Y A;  2LOQ A;  4L8U A;  3H37 A;  1HA2 A;  3CX9 A;  5GIP A;  3WHR A;  4ZCG A;  2XW1 A;  4TQ0 A;  5IJF A;  2KBZ A;  2Z8J A;  3ICX A;  2JUH A;  3JRY A;  5IIH A;  4OTT A;  2ROH A;  1E7A A;  3JQZ A;  1BKE A;  3GA9 L;  4OR0 A;  5GIO A;  1E7C A;  4IW2 A;  4N0F D;  2BXL A;  2DBX A;  1JNB A;  2YDF A;  4BKE A;  3WHQ A;  3B9L A;  3SIV B;  3W1S A;  2BXA A;  4ZBK A;  4MBE C;  5DQF A;  2NNW A;  1AO6 A;  3G9K D;  3GQU A;  1LOT A;  4L9Q A;  1HK3 A;  2QMC A;  2VDB A;  2XW0 A;  2BXO A;  2DBW A;  3A75 A;  4LB2 A;  4G04 A;  4LUH A;  4GDX A;  1HK2 A;  1HK1 A;  2DG5 A;  4HGK A;  1E7G A;  2AJE A;  2EFH A;  2EFE A;  5IIX A;  1MIW A;  4C31 B;  2BXH A;  5FUO A;  1O9X A;  1J78 A;  2XMO A;  3LU6 A;  4GG2 A;  3V09 A;  1BM0 A;  2XVU A;  4F5T A;  2BXP A;  3NVI A;  1E78 A;  3V08 A;  2BXC A;  3H3A A;  4EMX A;  2EFC A;  4K71 A;  3M99 C;  3LU7 A;  3FNM A;  4FJC B;  4F5V A;  4BY9 C;  3KJL A;  4F5S A;  2E0X A;  3FWC C;  4FK5 B;  4OT2 A;  3MHH B;  2V36 A;  1HK5 A;  3TDL A;  2XVV A;  1J7E A;  2OZB B;  1E7I A;  4OTU A;  5DBY A;  1MIY A;  2VUE A;  4ZBQ A;  4JK4 A;  1IJG A;  1E7B A;  1N5U A;  1E7F A;  1H9Z A;  3FWB C;  1VZS A;  4DHX B;  4ZBR A;  4FIP B;  2BXE A;  2BX8 A;  2BXB A;  2BXG A;  4J2V A;  5B5T A;  4N0U D;  2XVW A;  5BPK A;  2OT3 A;  5GHK A;  2BXQ A;  2NQO A;  2DBU A;  4TQ1 A;  1E7H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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