4ZXMA

Crystal structure of pgrp domain from branchiostoma belcheri tsingtauense peptidoglycan recognition protein 3
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
165
structure length
165
Chain Sequence
TCPRIVSKSEWGSRATNYNVFLSLPVPKVVIHHSAGATCSTQSSCSLQVRNIQNYHMDGRGYSDIGYNFLVGNDGNVYEGRGWDRRGAHALNVNTESIGICFMGDFTSQKPTASAIAAAKSLISCGVSLGKIRSGYSLYGHRDVGSTACPGNLLYDDIKSWGRYV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PGRP domain of peptidoglycan recognition protein 3
publication title Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BbtPGRP3 via Fusion with a Chitin Binding Domain
pubmed doi rcsb
source organism Branchiostoma belcheri tsingtauense
total genus 55
structure length 165
sequence length 165
ec nomenclature ec 3.5.1.28: N-acetylmuramoyl-L-alanine amidase.
pdb deposition date 2015-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 4zxmA00
3T39A 2Y2CA 3UMLA 4OUGA 3QJ1A 3QS0A 2F2LA 3CXAA 4BJ4A 4FNNA 5CTVA 1OHTA 2EAVA 3CG9A 3D2ZA 3TRUA 4Z8IA 4BXDA 3RT4A 2Z9NA 1SK4A 3NW3A 4OLSA 1SXRA 2Y2DA 2CB3A 2F2LX 3NG4A 4Q8SA 2AR3A 2RKQA 3D2YA 4KNLA 5E0AA 1AROL 3OGXA 1YCKA 3O4KA 4OPPA 2L47A 4BPAA 3NNOA 2XZ4A 3USXA 2Y2EA 4BXJA 2Y2BA 2Y28A 2XZ8A 3CORA 4BXEA 1TWQA 2APHA 2R2KA 1SK3A 1YB0A 2R90A 4GF9A 4X36A 2BH7A 3RDRA 5E0BA 4ZXMA 4BOLA 2WKXA 5DWFA 4Q9EA 3UILA 4IVVA 3HMBA 2EAXA 3C2XA 4KNKA 3T2VA 3UMQA 3QV4A 1Z6IA 3LATA 1S2JA 1J3GA 1LBAA 4ORVA 3EP1A
chains in the Genus database with same CATH superfamily
3T39A 2Y2CA 3UMLA 4OUGA 3QJ1A 3QS0A 2F2LA 3CXAA 4BJ4A 4FNNA 5CTVA 1OHTA 2EAVA 3CG9A 3D2ZA 3TRUA 4Z8IA 4BXDA 3RT4A 2Z9NA 1SK4A 3NW3A 4OLSA 1SXRA 2Y2DA 2CB3A 2F2LX 3NG4A 4Q8SA 2AR3A 2RKQA 3D2YA 4KNLA 5E0AA 1AROL 3OGXA 1YCKA 3O4KA 4OPPA 2L47A 4BPAA 3NNOA 2XZ4A 3USXA 2Y2EA 4BXJA 2Y2BA 2Y28A 2XZ8A 3CORA 4BXEA 1TWQA 2APHA 2R2KA 1SK3A 1YB0A 2R90A 4GF9A 4X36A 2BH7A 3RDRA 5E0BA 4ZXMA 4BOLA 2WKXA 5DWFA 4Q9EA 3UILA 4IVVA 3HMBA 2EAXA 3C2XA 4KNKA 3T2VA 3UMQA 3QV4A 1Z6IA 3LATA 1S2JA 1J3GA 1LBAA 4ORVA 3EP1A
chains in the Genus database with same CATH topology
3T39A 2Y2CA 3UMLA 4OUGA 3QJ1A 3QS0A 2F2LA 3CXAA 4BJ4A 4FNNA 5CTVA 1OHTA 2EAVA 3CG9A 3D2ZA 3TRUA 4Z8IA 4BXDA 3RT4A 2Z9NA 1SK4A 3NW3A 4OLSA 1SXRA 2Y2DA 2CB3A 2F2LX 3NG4A 4Q8SA 2AR3A 2RKQA 3D2YA 4KNLA 5E0AA 1AROL 3OGXA 1YCKA 3O4KA 4OPPA 2L47A 4BPAA 3NNOA 2XZ4A 3USXA 2Y2EA 4BXJA 2Y2BA 2Y28A 2XZ8A 3CORA 4BXEA 1TWQA 2APHA 2R2KA 1SK3A 1YB0A 2R90A 4GF9A 4X36A 2BH7A 3RDRA 5E0BA 4ZXMA 4BOLA 2WKXA 5DWFA 4Q9EA 3UILA 4IVVA 3HMBA 2EAXA 3C2XA 4KNKA 3T2VA 3UMQA 3QV4A 1Z6IA 3LATA 1S2JA 1J3GA 1LBAA 4ORVA 3EP1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T39 A;  2Y2C A;  3UML A;  4OUG A;  3QJ1 A;  3QS0 A;  2F2L A;  3CXA A;  4BJ4 A;  4FNN A;  5CTV A;  1OHT A;  2EAV A;  3CG9 A;  3D2Z A;  3TRU A;  4Z8I A;  4BXD A;  3RT4 A;  2Z9N A;  1SK4 A;  3NW3 A;  4OLS A;  1SXR A;  2Y2D A;  2CB3 A;  2F2L X;  3NG4 A;  4Q8S A;  2AR3 A;  2RKQ A;  3D2Y A;  4KNL A;  5E0A A;  1ARO L;  3OGX A;  1YCK A;  3O4K A;  4OPP A;  2L47 A;  4BPA A;  3NNO A;  2XZ4 A;  3USX A;  2Y2E A;  4BXJ A;  2Y2B A;  2Y28 A;  2XZ8 A;  3COR A;  4BXE A;  1TWQ A;  2APH A;  2R2K A;  1SK3 A;  1YB0 A;  2R90 A;  4GF9 A;  4X36 A;  2BH7 A;  3RDR A;  5E0B A;  4ZXM A;  4BOL A;  2WKX A;  5DWF A;  4Q9E A;  3UIL A;  4IVV A;  3HMB A;  2EAX A;  3C2X A;  4KNK A;  3T2V A;  3UMQ A;  3QV4 A;  1Z6I A;  3LAT A;  1S2J A;  1J3G A;  1LBA A;  4ORV A;  3EP1 A; 
#chains in the Genus database with same CATH topology
 3T39 A;  2Y2C A;  3UML A;  4OUG A;  3QJ1 A;  3QS0 A;  2F2L A;  3CXA A;  4BJ4 A;  4FNN A;  5CTV A;  1OHT A;  2EAV A;  3CG9 A;  3D2Z A;  3TRU A;  4Z8I A;  4BXD A;  3RT4 A;  2Z9N A;  1SK4 A;  3NW3 A;  4OLS A;  1SXR A;  2Y2D A;  2CB3 A;  2F2L X;  3NG4 A;  4Q8S A;  2AR3 A;  2RKQ A;  3D2Y A;  4KNL A;  5E0A A;  1ARO L;  3OGX A;  1YCK A;  3O4K A;  4OPP A;  2L47 A;  4BPA A;  3NNO A;  2XZ4 A;  3USX A;  2Y2E A;  4BXJ A;  2Y2B A;  2Y28 A;  2XZ8 A;  3COR A;  4BXE A;  1TWQ A;  2APH A;  2R2K A;  1SK3 A;  1YB0 A;  2R90 A;  4GF9 A;  4X36 A;  2BH7 A;  3RDR A;  5E0B A;  4ZXM A;  4BOL A;  2WKX A;  5DWF A;  4Q9E A;  3UIL A;  4IVV A;  3HMB A;  2EAX A;  3C2X A;  4KNK A;  3T2V A;  3UMQ A;  3QV4 A;  1Z6I A;  3LAT A;  1S2J A;  1J3G A;  1LBA A;  4ORV A;  3EP1 A; 
#chains in the Genus database with same CATH homology
 3T39 A;  2Y2C A;  3UML A;  4OUG A;  3QJ1 A;  3QS0 A;  2F2L A;  3CXA A;  4BJ4 A;  4FNN A;  5CTV A;  1OHT A;  2EAV A;  3CG9 A;  3D2Z A;  3TRU A;  4Z8I A;  4BXD A;  3RT4 A;  2Z9N A;  1SK4 A;  3NW3 A;  4OLS A;  1SXR A;  2Y2D A;  2CB3 A;  2F2L X;  3NG4 A;  4Q8S A;  2AR3 A;  2RKQ A;  3D2Y A;  4KNL A;  5E0A A;  1ARO L;  3OGX A;  1YCK A;  3O4K A;  4OPP A;  2L47 A;  4BPA A;  3NNO A;  2XZ4 A;  3USX A;  2Y2E A;  4BXJ A;  2Y2B A;  2Y28 A;  2XZ8 A;  3COR A;  4BXE A;  1TWQ A;  2APH A;  2R2K A;  1SK3 A;  1YB0 A;  2R90 A;  4GF9 A;  4X36 A;  2BH7 A;  3RDR A;  5E0B A;  4ZXM A;  4BOL A;  2WKX A;  5DWF A;  4Q9E A;  3UIL A;  4IVV A;  3HMB A;  2EAX A;  3C2X A;  4KNK A;  3T2V A;  3UMQ A;  3QV4 A;  1Z6I A;  3LAT A;  1S2J A;  1J3G A;  1LBA A;  4ORV A;  3EP1 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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