4AKDA

High resolution structure of mannose binding lectin from champedak (cmb)
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
150
structure length
150
Chain Sequence
MASQTITVGPWGGSGGNGWDDGSYTGIRQIELSYKEAIGSFCVIYDLNGESFPGPKHTSKLPYKNVKIELQFPEEFLVSVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords MANNOSE-SPECIFIC LECTIN KM+
publication title Structures and Binding Specificity of Galactose- and Mannose-Binding Lectins from Champedak: Differences from Jackfruit Lectins
pubmed doi rcsb
total genus 30
structure length 150
sequence length 150
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4akdA00
1X1VA 5J50A 2JZ4A 4PIUA 4R6RA 5EXGA 1WS4A 1UGXA 5J4XA 2GUDA 1UH1A 1TOQA 4PIFA 1XEZA 2BMYA 1UGWC 4R6NA 1OUWA 4PIKA 3LKYA 1XXQA 1KU8A 3LM1A 1J4TA 4PITA 1JOTA 2GUEA 1ZGRA 3LLYA 1WS5C 1J4SA 4AKBA 4R6OA 1UGWA 3MIUA 3AQGA 3R52A 3LLZA 4WOGA 3O44A 3LL0A 4GX7A 1C3MA 5J4TA 2BN0A 1ZGSA 3P8SA 1JACA 4AKDA 4MQ0A 1UH0A 1WS5A 4R6PA 1VBOA 2NU5A 1C3NA 2GUXA 2BMZA 4AK4A 2GUCA 1M26A 1KUJA 5JM1A 3APAA 3VZEA 4AKCA 1J4UA 2GTYA 4R6QA 1TP8A 3R51A 1PXDA 3MITA 3R50A 4DDNA 5J51A 1UGYA 3WOCA 3VY6A 1VBPA 2HYQA 3VY7A 1WS4C 1UGYC 3MIVA 3WOBA 3LL2A 5BN6E 3LL1A 3VZGA 5AV7A 1C3KA 2NUOA 2HYRA 1XXRA 3VZFA
chains in the Genus database with same CATH superfamily
1X1VA 5J50A 2JZ4A 4PIUA 4R6RA 5EXGA 1WS4A 1UGXA 5J4XA 2GUDA 1UH1A 1TOQA 4PIFA 4D8MA 1XEZA 2BMYA 1UGWC 4R6NA 1OUWA 4PIKA 3LKYA 1XXQA 1KU8A 1DLCA 3LM1A 1J4TA 1JI6A 4PITA 1JOTA 2GUEA 1ZGRA 3LLYA 1WS5C 1J4SA 4AKBA 4R6OA 1UGWA 3MIUA 4MOAA 3AQGA 3R52A 3LLZA 4WOGA 3O44A 3LL0A 4GX7A 4QX1A 1C3MA 5J4TA 2BN0A 1ZGSA 1I5PA 3P8SA 1JACA 4W8JA 4AKDA 4MQ0A 1UH0A 4ARYA 1VMOA 1WS5A 1CIYA 4R6PA 1VBOA 2NU5A 1C3NA 4QX2A 2GUXA 2BMZA 2QP2A 4AK4A 2GUCA 4ARXA 1M26A 2C9KA 4QX0A 1KUJA 5JM1A 3APAA 3VZEA 4AKCA 1J4UA 2GTYA 4R6QA 1TP8A 3R51A 1PXDA 3MITA 3R50A 1W99A 4DDNA 5J51A 1UGYA 3WOCA 3EB7A 1VBPA 3VY6A 2HYQA 4QX3A 3VY7A 1WS4C 1UGYC 3MIVA 3TOWA 3WOBA 3LL2A 5BN6E 3LL1A 3VZGA 5AV7A 1C3KA 2NUOA 2HYRA 1XXRA 3VZFA
chains in the Genus database with same CATH topology
1X1VA 5J50A 2JZ4A 4PIUA 4R6RA 5EXGA 1WS4A 1UGXA 5J4XA 2GUDA 1UH1A 1TOQA 4PIFA 1XEZA 2BMYA 1UGWC 4R6NA 1OUWA 4PIKA 3LKYA 1XXQA 1KU8A 3LM1A 1J4TA 4PITA 1JOTA 2GUEA 1ZGRA 3LLYA 1WS5C 1J4SA 4AKBA 4R6OA 1UGWA 3MIUA 3AQGA 3R52A 3LLZA 4WOGA 3O44A 3LL0A 4GX7A 1C3MA 5J4TA 2BN0A 1ZGSA 3P8SA 1JACA 4AKDA 4MQ0A 1UH0A 1WS5A 4R6PA 1VBOA 2NU5A 1C3NA 2GUXA 2BMZA 4AK4A 2GUCA 1M26A 1KUJA 5JM1A 3APAA 3VZEA 4AKCA 1J4UA 2GTYA 4R6QA 1TP8A 3R51A 1PXDA 3MITA 3R50A 4DDNA 5J51A 1UGYA 3WOCA 3VY6A 1VBPA 2HYQA 3VY7A 1WS4C 1UGYC 3MIVA 3WOBA 3LL2A 5BN6E 3LL1A 3VZGA 5AV7A 1C3KA 2NUOA 2HYRA 1XXRA 3VZFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X1V A;  5J50 A;  2JZ4 A;  4PIU A;  4R6R A;  5EXG A;  1WS4 A;  1UGX A;  5J4X A;  2GUD A;  1UH1 A;  1TOQ A;  4PIF A;  1XEZ A;  2BMY A;  1UGW C;  4R6N A;  1OUW A;  4PIK A;  3LKY A;  1XXQ A;  1KU8 A;  3LM1 A;  1J4T A;  4PIT A;  1JOT A;  2GUE A;  1ZGR A;  3LLY A;  1WS5 C;  1J4S A;  4AKB A;  4R6O A;  1UGW A;  3MIU A;  3AQG A;  3R52 A;  3LLZ A;  4WOG A;  3O44 A;  3LL0 A;  4GX7 A;  1C3M A;  5J4T A;  2BN0 A;  1ZGS A;  3P8S A;  1JAC A;  4AKD A;  4MQ0 A;  1UH0 A;  1WS5 A;  4R6P A;  1VBO A;  2NU5 A;  1C3N A;  2GUX A;  2BMZ A;  4AK4 A;  2GUC A;  1M26 A;  1KUJ A;  5JM1 A;  3APA A;  3VZE A;  4AKC A;  1J4U A;  2GTY A;  4R6Q A;  1TP8 A;  3R51 A;  1PXD A;  3MIT A;  3R50 A;  4DDN A;  5J51 A;  1UGY A;  3WOC A;  3VY6 A;  1VBP A;  2HYQ A;  3VY7 A;  1WS4 C;  1UGY C;  3MIV A;  3WOB A;  3LL2 A;  5BN6 E;  3LL1 A;  3VZG A;  5AV7 A;  1C3K A;  2NUO A;  2HYR A;  1XXR A;  3VZF A; 
#chains in the Genus database with same CATH topology
 1X1V A;  5J50 A;  2JZ4 A;  4PIU A;  4R6R A;  5EXG A;  1WS4 A;  1UGX A;  5J4X A;  2GUD A;  1UH1 A;  1TOQ A;  4PIF A;  4D8M A;  1XEZ A;  2BMY A;  1UGW C;  4R6N A;  1OUW A;  4PIK A;  3LKY A;  1XXQ A;  1KU8 A;  1DLC A;  3LM1 A;  1J4T A;  1JI6 A;  4PIT A;  1JOT A;  2GUE A;  1ZGR A;  3LLY A;  1WS5 C;  1J4S A;  4AKB A;  4R6O A;  1UGW A;  3MIU A;  4MOA A;  3AQG A;  3R52 A;  3LLZ A;  4WOG A;  3O44 A;  3LL0 A;  4GX7 A;  4QX1 A;  1C3M A;  5J4T A;  2BN0 A;  1ZGS A;  1I5P A;  3P8S A;  1JAC A;  4W8J A;  4AKD A;  4MQ0 A;  1UH0 A;  4ARY A;  1VMO A;  1WS5 A;  1CIY A;  4R6P A;  1VBO A;  2NU5 A;  1C3N A;  4QX2 A;  2GUX A;  2BMZ A;  2QP2 A;  4AK4 A;  2GUC A;  4ARX A;  1M26 A;  2C9K A;  4QX0 A;  1KUJ A;  5JM1 A;  3APA A;  3VZE A;  4AKC A;  1J4U A;  2GTY A;  4R6Q A;  1TP8 A;  3R51 A;  1PXD A;  3MIT A;  3R50 A;  1W99 A;  4DDN A;  5J51 A;  1UGY A;  3WOC A;  3EB7 A;  1VBP A;  3VY6 A;  2HYQ A;  4QX3 A;  3VY7 A;  1WS4 C;  1UGY C;  3MIV A;  3TOW A;  3WOB A;  3LL2 A;  5BN6 E;  3LL1 A;  3VZG A;  5AV7 A;  1C3K A;  2NUO A;  2HYR A;  1XXR A;  3VZF A; 
#chains in the Genus database with same CATH homology
 1X1V A;  5J50 A;  2JZ4 A;  4PIU A;  4R6R A;  5EXG A;  1WS4 A;  1UGX A;  5J4X A;  2GUD A;  1UH1 A;  1TOQ A;  4PIF A;  1XEZ A;  2BMY A;  1UGW C;  4R6N A;  1OUW A;  4PIK A;  3LKY A;  1XXQ A;  1KU8 A;  3LM1 A;  1J4T A;  4PIT A;  1JOT A;  2GUE A;  1ZGR A;  3LLY A;  1WS5 C;  1J4S A;  4AKB A;  4R6O A;  1UGW A;  3MIU A;  3AQG A;  3R52 A;  3LLZ A;  4WOG A;  3O44 A;  3LL0 A;  4GX7 A;  1C3M A;  5J4T A;  2BN0 A;  1ZGS A;  3P8S A;  1JAC A;  4AKD A;  4MQ0 A;  1UH0 A;  1WS5 A;  4R6P A;  1VBO A;  2NU5 A;  1C3N A;  2GUX A;  2BMZ A;  4AK4 A;  2GUC A;  1M26 A;  1KUJ A;  5JM1 A;  3APA A;  3VZE A;  4AKC A;  1J4U A;  2GTY A;  4R6Q A;  1TP8 A;  3R51 A;  1PXD A;  3MIT A;  3R50 A;  4DDN A;  5J51 A;  1UGY A;  3WOC A;  3VY6 A;  1VBP A;  2HYQ A;  3VY7 A;  1WS4 C;  1UGY C;  3MIV A;  3WOB A;  3LL2 A;  5BN6 E;  3LL1 A;  3VZG A;  5AV7 A;  1C3K A;  2NUO A;  2HYR A;  1XXR A;  3VZF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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