4AKRA

Crystal structure of the cytoplasmic actin capping protein cap32_34 from dictyostelium discoideum
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
269
structure length
269
Chain Sequence
ASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGSALITKEGEISNNEYLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGDTTFKALRRALPINRTKINWQKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin-binding protein
molecule keywords F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
publication title Conservation and Divergence between Cytoplasmic and Muscle-Specific Actin Capping Proteins: Insights from the Crystal Structure of Cytoplasmic CAP32/34 from Dictyostelium Discoideum.
pubmed doi rcsb
source organism Dictyostelium discoideum
total genus 80
structure length 269
sequence length 269
chains with identical sequence C
ec nomenclature
pdb deposition date 2012-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 4akrA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 4akrA02
3AA7A 3AAEB 3LK2B 5ADXK 2KZ7B 2KXPB 3LK3A 3AA7B 1IZNA 3LK42 3LK3B 3LK41 3AA1A 1IZNB 5AFUL 3AA0A 3AA6A 5ADXL 3AAAA 4AKRA 3AA1B 3AA0B 3AA6B 3AAEA 3LK2A 3AAAB 2KZ7A 4AKRB 2KXPA 5AFUK
chains in the Genus database with same CATH superfamily
2N2LA 3VZUX 1YS5A 5EE2A 2QTKA 2R8AA 2Y0KA 2ES9A 2OYOA 2W80C 3VE1A 4AKMA 3POQA 4N75A 3SYBA 3NJTA 4FRTA 4RLCA 2GMYA 4PUXA 4GCSA 1THQA 4K3BA 4O3XB 2Y0HA 4F4BA 4GCPA 3DZMA 4O3WA 3PQUA 3GP6A 1E54A 1VKEA 3VY9X 3WU2O 2K0LA 4RJWA 3AA0B 3D7IA 4GHBA 4LSIA 4JFBA 5DL8A 3DA3A 1IZNB 5GV0A 1HXXA 2OMFA 3SY9A 2Y7SA 5GTHO 3HWBA 2LFUA 4GCQA 3SY7A 2XTRA 4AFKA 2N2MA 4XNLA 4FSOA 4G76A 1BH3A 5KAFO 3LK3B 4AYEC 1Q9GA 3AA1A 3C1LA 3QRAA 1KNCA 3O0EA 4K3CA 3KZIO 3BRYA 4AKRA 3AA1B 3HOLA 3JCUO 3VY8X 2KXPA 5DL7A 5AFUK 1HXUA 4BUMX 1P4TA 2R88A 1ME5A 4CTDA 1ZHZA 4FSPA 4N74A 4U9CA 2R4OA 4Z3TA 1QJPA 5TISO 2QEUA 5B5EO 3A0HO 1S5LO 2XE5A 2XE1A 2JMMA 4XNKA 3WI4A 2Q0TA 2F1CX 3QRCA 2KC0A 2MNHA 5DL6A 1ZHWA 2XTQA 2R4LA 2XMXA 3PGSA 2MHLA 5PRNA 4AYNA 3TZGA 3POXA 4C69X 2XE3A 2WVPA 1GFPA 2AXTO 5GTIO 2X27X 4E1SA 2CWQA 3AA7A 5G39A 5FVNA 3AA7B 2OUWA 4FQEA 3T0SA 2XE2A 2KDYA 3AA0A 2PRNA 2ZLDA 2PFXA 2X9KA 3AAEB 5D5DA 2KZ7B 1OSMA 2Y2XA 1H6S1 4D64A 4D5UA 3VE2A 1IZNA 3LK42 2O4VA 3LK41 3BEYA 3PRNA 4FMSA 3JTYA 5G3AA 4B61A 4LSHA 5B66O 3LK2B 1BXWA 2WJRA 3SZDA 4RLBA 3LK3A 4FESA 1GU9A 1ORMA 2WJQA 4O4XA 4AZLA 1MM5A 2LHFA 2IWWA 4O49A 4AYID 3AA6B 1GFOA 3UU2A 1T1LA 2ERVA 5KAIO 1QJ9A 5ADXK 3NSGA 3UPGA 4FZNA 6PRNA 4JCHA 1P8CA 3WI5A 2IJCA 3HW9A 3PGRA 3G7GA 4IL6O 4KR8A 4N59A 3V8UA 3PGUA 2J1NA 3UAQA 3HOEA 1MPFA 3VZTX 4C00A 4C4VA 4O3YA 1LW1A 5JDPA 4PR7A 4C4VB 3A2SX 1BT9A 5AFUL 4GF4A 3AAAB 2XG6A 1ZHYA 4G9QA 5DIKA 3LVYA 1OPFA 2M07A 5DIPA 4O3ZA 3VZWX 3EMNX 5T5FA 3DWNA 4D65A 4AUIA 5DL5A 4O4UA 4KRAA 1Q9FA 3AAEA 2KZ7A 2F1VA 4PJ0O 3DA4A 4LSFA 4AYMC 4FZMA 4FZLA 5G26A 2FGRA 4E1TA 2FGQX 3PORA 3T24A 3DWOX 4KR4A 2PRRA 2PORA 4UB8O 5IYUA 3LK2A 1T16A 2JQYA 1PHOA 1GFQA 3K19A 3A0BO 5E79O 2Y0LA 2K4TA 4FT6A 3C5OA 3SYSA 2ZFGA 3AA6A 2R4NA 2M06A 1G90A 4G75A 3POUA 8PRNA 5G38A 1ZHTA 2F1TA 1QJ8A 4QQ1A 3RBHA 2YPVA 3PF1A 4LSEA 2ODJA 5H2FO 4UB6O 3FYXA 2JN8A 3BRZA 3PQSA 1HXTA 4AKRB 2IWVA 1ZHXA 2GE4A 2KXPB 4N58A 2R89A 4FRXA 2O4DA 4FOZA 1MM4A 3KVDD 1GFMA 2W81C 7PRNA 3SZVA 5ADXL 3AAAA 4AYDC 4RJXA 2YNKA 2J4UP 2R4PA 3T20A 4FUVA 2AF7A 1PRNA 3BS0A 4RL9A 1GFNA
chains in the Genus database with same CATH topology
4LSFA 1HXUA 4AYMC 4BUMX 1P4TA 3LK2B 4FZMA 1BXWA 4FZLA 2N2LA 5G26A 1ME5A 3SZDA 1ZHZA 4RLBA 3VZUX 3LK3A 2FGRA 1YS5A 5EE2A 3DA4A 2FGQX 3PORA 4FESA 3T24A 4E1TA 4FSPA 2QTKA 4U9CA 4Z3TA 4KR4A 2Y0KA 2ES9A 2PRRA 1QJPA 2OYOA 1GU9A 1ORMA 2PORA 2W80C 4O4XA 3POQA 3SYBA 3VE1A 4AKMA 2QEUA 4AZLA 4FRTA 1MM5A 2LHFA 4O49A 4AYID 4RLCA 5IYUA 2GMYA 3AA6B 1GFOA 2XE5A 3UU2A 3LK2A 4PUXA 2XE1A 2JMMA 4GCSA 2ERVA 1PHOA 1GFQA 1THQA 1QJ9A 3K19A 4XNKA 3WI4A 2Q0TA 4O3XB 5ADXK 3QRCA 3NSGA 2KC0A 3UPGA 2Y0HA 4FZNA 4F4BA 2MNHA 5DL6A 6PRNA 1ZHWA 4JCHA 1P8CA 2XTQA 4GCPA 2XMXA 2Y0LA 3WI5A 2K4TA 4AYNA 4FT6A 2IJCA 3C5OA 2MHLA 4O3WA 5PRNA 3HW9A 3SYSA 2ZFGA 3PQUA 3POXA 3TZGA 3GP6A 3AA6A 3G7GA 1E54A 1VKEA 4KR8A 4C69X 3VY9X 2XE3A 2K0LA 2M06A 4N59A 1G90A 4RJWA 3AA0B 3V8UA 1GFPA 2J1NA 3UAQA 2X27X 3HOEA 4E1SA 3D7IA 1MPFA 2CWQA 4G75A 3POUA 4GHBA 8PRNA 1ZHTA 3VZTX 3AA7A 2F1TA 1QJ8A 4O3YA 1LW1A 5JDPA 4LSIA 5FVNA 4QQ1A 3RBHA 2YPVA 4LSEA 4JFBA 3AA7B 2ODJA 5DL8A 2OUWA 3T0SA 3A2SX 2XE2A 3DA3A 1IZNB 2KDYA 1BT9A 3FYXA 3AA0A 5AFUL 5GV0A 4GF4A 2JN8A 1HXXA 2PRNA 3PQSA 2OMFA 3SY9A 1HXTA 4RL9A 2Y7SA 2ZLDA 3AAAB 4AKRB 2XG6A 1ZHXA 2GE4A 1ZHYA 2PFXA 2LFUA 3HWBA 4GCQA 4G9QA 5DIKA 3LVYA 3SY7A 1OPFA 2M07A 2XTRA 3AAEB 2N2MA 5D5DA 4AFKA 2KZ7B 5DIPA 2KXPB 4XNLA 4FSOA 4G76A 1OSMA 2Y2XA 1H6S1 4N58A 4O3ZA 3VZWX 4D64A 3EMNX 5T5FA 4D5UA 4FRXA 3VE2A 4D65A 4AUIA 2O4DA 1BH3A 1IZNA 3LK42 4FOZA 1MM4A 3LK3B 2O4VA 3LK41 5DL5A 1Q9GA 4AYEC 3AA1A 3KVDD 3BEYA 3C1LA 1GFMA 2W81C 3PRNA 3QRAA 4FMSA 1KNCA 3O0EA 4O4UA 7PRNA 3JTYA 3SZVA 5ADXL 3AAAA 4AYDC 4AKRA 4KRAA 4RJXA 3AA1B 1Q9FA 2YNKA 2J4UP 3HOLA 4B61A 3T20A 3AAEA 4FUVA 2KZ7A 2AF7A 2F1VA 2KXPA 3VY8X 1PRNA 5DL7A 4LSHA 5AFUK 1GFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA7 A;  3AAE B;  3LK2 B;  5ADX K;  2KZ7 B;  2KXP B;  3LK3 A;  3AA7 B;  1IZN A;  3LK4 2;  3LK3 B;  3LK4 1;  3AA1 A;  1IZN B;  5AFU L;  3AA0 A;  3AA6 A;  5ADX L;  3AAA A;  4AKR A;  3AA1 B;  3AA0 B;  3AA6 B;  3AAE A;  3LK2 A;  3AAA B;  2KZ7 A;  4AKR B;  2KXP A;  5AFU K; 
#chains in the Genus database with same CATH topology
 2N2L A;  3VZU X;  1YS5 A;  5EE2 A;  2QTK A;  2R8A A;  2Y0K A;  2ES9 A;  2OYO A;  2W80 C;  3VE1 A;  4AKM A;  3POQ A;  4N75 A;  3SYB A;  3NJT A;  4FRT A;  4RLC A;  2GMY A;  4PUX A;  4GCS A;  1THQ A;  4K3B A;  4O3X B;  2Y0H A;  4F4B A;  4GCP A;  3DZM A;  4O3W A;  3PQU A;  3GP6 A;  1E54 A;  1VKE A;  3VY9 X;  3WU2 O;  2K0L A;  4RJW A;  3AA0 B;  3D7I A;  4GHB A;  4LSI A;  4JFB A;  5DL8 A;  3DA3 A;  1IZN B;  5GV0 A;  1HXX A;  2OMF A;  3SY9 A;  2Y7S A;  5GTH O;  3HWB A;  2LFU A;  4GCQ A;  3SY7 A;  2XTR A;  4AFK A;  2N2M A;  4XNL A;  4FSO A;  4G76 A;  1BH3 A;  5KAF O;  3LK3 B;  4AYE C;  1Q9G A;  3AA1 A;  3C1L A;  3QRA A;  1KNC A;  3O0E A;  4K3C A;  3KZI O;  3BRY A;  4AKR A;  3AA1 B;  3HOL A;  3JCU O;  3VY8 X;  2KXP A;  5DL7 A;  5AFU K;  1HXU A;  4BUM X;  1P4T A;  2R88 A;  1ME5 A;  4CTD A;  1ZHZ A;  4FSP A;  4N74 A;  4U9C A;  2R4O A;  4Z3T A;  1QJP A;  5TIS O;  2QEU A;  5B5E O;  3A0H O;  1S5L O;  2XE5 A;  2XE1 A;  2JMM A;  4XNK A;  3WI4 A;  2Q0T A;  2F1C X;  3QRC A;  2KC0 A;  2MNH A;  5DL6 A;  1ZHW A;  2XTQ A;  2R4L A;  2XMX A;  3PGS A;  2MHL A;  5PRN A;  4AYN A;  3TZG A;  3POX A;  4C69 X;  2XE3 A;  2WVP A;  1GFP A;  2AXT O;  5GTI O;  2X27 X;  4E1S A;  2CWQ A;  3AA7 A;  5G39 A;  5FVN A;  3AA7 B;  2OUW A;  4FQE A;  3T0S A;  2XE2 A;  2KDY A;  3AA0 A;  2PRN A;  2ZLD A;  2PFX A;  2X9K A;  3AAE B;  5D5D A;  2KZ7 B;  1OSM A;  2Y2X A;  1H6S 1;  4D64 A;  4D5U A;  3VE2 A;  1IZN A;  3LK4 2;  2O4V A;  3LK4 1;  3BEY A;  3PRN A;  4FMS A;  3JTY A;  5G3A A;  4B61 A;  4LSH A;  5B66 O;  3LK2 B;  1BXW A;  2WJR A;  3SZD A;  4RLB A;  3LK3 A;  4FES A;  1GU9 A;  1ORM A;  2WJQ A;  4O4X A;  4AZL A;  1MM5 A;  2LHF A;  2IWW A;  4O49 A;  4AYI D;  3AA6 B;  1GFO A;  3UU2 A;  1T1L A;  2ERV A;  5KAI O;  1QJ9 A;  5ADX K;  3NSG A;  3UPG A;  4FZN A;  6PRN A;  4JCH A;  1P8C A;  3WI5 A;  2IJC A;  3HW9 A;  3PGR A;  3G7G A;  4IL6 O;  4KR8 A;  4N59 A;  3V8U A;  3PGU A;  2J1N A;  3UAQ A;  3HOE A;  1MPF A;  3VZT X;  4C00 A;  4C4V A;  4O3Y A;  1LW1 A;  5JDP A;  4PR7 A;  4C4V B;  3A2S X;  1BT9 A;  5AFU L;  4GF4 A;  3AAA B;  2XG6 A;  1ZHY A;  4G9Q A;  5DIK A;  3LVY A;  1OPF A;  2M07 A;  5DIP A;  4O3Z A;  3VZW X;  3EMN X;  5T5F A;  3DWN A;  4D65 A;  4AUI A;  5DL5 A;  4O4U A;  4KRA A;  1Q9F A;  3AAE A;  2KZ7 A;  2F1V A;  4PJ0 O;  3DA4 A;  4LSF A;  4AYM C;  4FZM A;  4FZL A;  5G26 A;  2FGR A;  4E1T A;  2FGQ X;  3POR A;  3T24 A;  3DWO X;  4KR4 A;  2PRR A;  2POR A;  4UB8 O;  5IYU A;  3LK2 A;  1T16 A;  2JQY A;  1PHO A;  1GFQ A;  3K19 A;  3A0B O;  5E79 O;  2Y0L A;  2K4T A;  4FT6 A;  3C5O A;  3SYS A;  2ZFG A;  3AA6 A;  2R4N A;  2M06 A;  1G90 A;  4G75 A;  3POU A;  8PRN A;  5G38 A;  1ZHT A;  2F1T A;  1QJ8 A;  4QQ1 A;  3RBH A;  2YPV A;  3PF1 A;  4LSE A;  2ODJ A;  5H2F O;  4UB6 O;  3FYX A;  2JN8 A;  3BRZ A;  3PQS A;  1HXT A;  4AKR B;  2IWV A;  1ZHX A;  2GE4 A;  2KXP B;  4N58 A;  2R89 A;  4FRX A;  2O4D A;  4FOZ A;  1MM4 A;  3KVD D;  1GFM A;  2W81 C;  7PRN A;  3SZV A;  5ADX L;  3AAA A;  4AYD C;  4RJX A;  2YNK A;  2J4U P;  2R4P A;  3T20 A;  4FUV A;  2AF7 A;  1PRN A;  3BS0 A;  4RL9 A;  1GFN A; 
#chains in the Genus database with same CATH homology
 4LSF A;  1HXU A;  4AYM C;  4BUM X;  1P4T A;  3LK2 B;  4FZM A;  1BXW A;  4FZL A;  2N2L A;  5G26 A;  1ME5 A;  3SZD A;  1ZHZ A;  4RLB A;  3VZU X;  3LK3 A;  2FGR A;  1YS5 A;  5EE2 A;  3DA4 A;  2FGQ X;  3POR A;  4FES A;  3T24 A;  4E1T A;  4FSP A;  2QTK A;  4U9C A;  4Z3T A;  4KR4 A;  2Y0K A;  2ES9 A;  2PRR A;  1QJP A;  2OYO A;  1GU9 A;  1ORM A;  2POR A;  2W80 C;  4O4X A;  3POQ A;  3SYB A;  3VE1 A;  4AKM A;  2QEU A;  4AZL A;  4FRT A;  1MM5 A;  2LHF A;  4O49 A;  4AYI D;  4RLC A;  5IYU A;  2GMY A;  3AA6 B;  1GFO A;  2XE5 A;  3UU2 A;  3LK2 A;  4PUX A;  2XE1 A;  2JMM A;  4GCS A;  2ERV A;  1PHO A;  1GFQ A;  1THQ A;  1QJ9 A;  3K19 A;  4XNK A;  3WI4 A;  2Q0T A;  4O3X B;  5ADX K;  3QRC A;  3NSG A;  2KC0 A;  3UPG A;  2Y0H A;  4FZN A;  4F4B A;  2MNH A;  5DL6 A;  6PRN A;  1ZHW A;  4JCH A;  1P8C A;  2XTQ A;  4GCP A;  2XMX A;  2Y0L A;  3WI5 A;  2K4T A;  4AYN A;  4FT6 A;  2IJC A;  3C5O A;  2MHL A;  4O3W A;  5PRN A;  3HW9 A;  3SYS A;  2ZFG A;  3PQU A;  3POX A;  3TZG A;  3GP6 A;  3AA6 A;  3G7G A;  1E54 A;  1VKE A;  4KR8 A;  4C69 X;  3VY9 X;  2XE3 A;  2K0L A;  2M06 A;  4N59 A;  1G90 A;  4RJW A;  3AA0 B;  3V8U A;  1GFP A;  2J1N A;  3UAQ A;  2X27 X;  3HOE A;  4E1S A;  3D7I A;  1MPF A;  2CWQ A;  4G75 A;  3POU A;  4GHB A;  8PRN A;  1ZHT A;  3VZT X;  3AA7 A;  2F1T A;  1QJ8 A;  4O3Y A;  1LW1 A;  5JDP A;  4LSI A;  5FVN A;  4QQ1 A;  3RBH A;  2YPV A;  4LSE A;  4JFB A;  3AA7 B;  2ODJ A;  5DL8 A;  2OUW A;  3T0S A;  3A2S X;  2XE2 A;  3DA3 A;  1IZN B;  2KDY A;  1BT9 A;  3FYX A;  3AA0 A;  5AFU L;  5GV0 A;  4GF4 A;  2JN8 A;  1HXX A;  2PRN A;  3PQS A;  2OMF A;  3SY9 A;  1HXT A;  4RL9 A;  2Y7S A;  2ZLD A;  3AAA B;  4AKR B;  2XG6 A;  1ZHX A;  2GE4 A;  1ZHY A;  2PFX A;  2LFU A;  3HWB A;  4GCQ A;  4G9Q A;  5DIK A;  3LVY A;  3SY7 A;  1OPF A;  2M07 A;  2XTR A;  3AAE B;  2N2M A;  5D5D A;  4AFK A;  2KZ7 B;  5DIP A;  2KXP B;  4XNL A;  4FSO A;  4G76 A;  1OSM A;  2Y2X A;  1H6S 1;  4N58 A;  4O3Z A;  3VZW X;  4D64 A;  3EMN X;  5T5F A;  4D5U A;  4FRX A;  3VE2 A;  4D65 A;  4AUI A;  2O4D A;  1BH3 A;  1IZN A;  3LK4 2;  4FOZ A;  1MM4 A;  3LK3 B;  2O4V A;  3LK4 1;  5DL5 A;  1Q9G A;  4AYE C;  3AA1 A;  3KVD D;  3BEY A;  3C1L A;  1GFM A;  2W81 C;  3PRN A;  3QRA A;  4FMS A;  1KNC A;  3O0E A;  4O4U A;  7PRN A;  3JTY A;  3SZV A;  5ADX L;  3AAA A;  4AYD C;  4AKR A;  4KRA A;  4RJX A;  3AA1 B;  1Q9F A;  2YNK A;  2J4U P;  3HOL A;  4B61 A;  3T20 A;  3AAE A;  4FUV A;  2KZ7 A;  2AF7 A;  2F1V A;  2KXP A;  3VY8 X;  1PRN A;  5DL7 A;  4LSH A;  5AFU K;  1GFN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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