4AL3A

Peptide deformylase (co-form) with mercaptoethanol
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
162
structure length
161
Chain Sequence
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PEPTIDE DEFORMYLASE
publication title A Fret Enzyme-Based Probe for Monitoring Hydrogen Sulfide.
pubmed doi rcsb
source organism Escherichia coli
total genus 46
structure length 161
sequence length 162
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2012-02-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 4al3A00
3PN4A 1BS4A 2DEFA 3QU1A 1BS6A 3K6LA 3PN3A 5CP0A 3PN5A 5JF6A 1N5NA 1XENA 1LRYA 2OS0A 5CWXA 3SW8P 4AZ4A 5CPDA 1ZXZA 1ZY1A 3PN6A 2AI8A 2W3TA 1DEFA 2EW6A 3SVJP 3M6OA 5JF0A 5JEYA 5CXJA 1RL4A 5CVQA 2EW5A 4E9AA 1VEYA 3G5PA 3CPMA 1BS5A 3UWBA 1JYMA 5HGWA 5JF4A 5CVKA 1BSZA 1VEZA 5CX0A 4JE8A 3U7LA 2AI9A 2OS3A 3G5KA 5JEZA 3M6RA 5T8ZA 5CY8A 5J46A 3OCAA 1BSKA 1LRUA 4E9BA 2W3UA 5JF7A 1LQYA 4DR8A 1BSJA 5JF2A 1BS8A 3PN2A 1S17A 1G27A 3M6PA 4AL3A 5CY7A 1Y6HA 1LMEA 1ZY0A 5CWYA 4EOXP 1SV2A 4WXKA 3U04A 1XEMA 2OS1A 5JF5A 4WXLA 1Q1YA 1V3YA 4JE6A 5KOBA 4DR9A 1SZZA 4NT8A 3UWAA 3U7NA 1ICJA 5CVPA 1DFFA 1RQCA 3M6QA 1LMHA 3L87A 3U7KA 5JF3A 5JF1A 4JE7A 3G6NA 1G2AA 1VEVA 3O3JA 2EW7A 3CMDA 1LQWA 5JF8A 3U7MA 1XEOA 4AL2A 5JEXA 3E3UA 1LM6A 5E5DA 1WS1A 1BS7A 3FWXA 5I2BA 2AIAA 2AI7A 1IX1A 2AIEP 1LM4A 2KMNA 2OKLA 1WS0A 3STRP
chains in the Genus database with same CATH superfamily
3PN4A 1BS4A 2DEFA 3QU1A 1BS6A 3K6LA 3PN3A 5CP0A 3PN5A 5JF6A 1N5NA 1XENA 1LRYA 2OS0A 5CWXA 3SW8P 4AZ4A 5CPDA 1ZXZA 1ZY1A 3PN6A 2AI8A 2W3TA 1DEFA 2EW6A 3SVJP 3M6OA 5JF0A 5JEYA 5CXJA 1RL4A 5CVQA 2EW5A 4E9AA 1VEYA 3G5PA 3CPMA 1BS5A 3UWBA 1JYMA 5HGWA 5JF4A 5CVKA 1BSZA 1VEZA 5CX0A 4JE8A 3U7LA 2AI9A 2OS3A 3G5KA 5JEZA 3M6RA 5T8ZA 5CY8A 5J46A 3OCAA 1BSKA 1LRUA 4E9BA 2W3UA 5JF7A 1LQYA 4DR8A 1BSJA 5JF2A 1BS8A 3PN2A 1S17A 1G27A 3M6PA 4AL3A 5CY7A 1Y6HA 1LMEA 1ZY0A 5CWYA 4EOXP 1SV2A 4WXKA 3U04A 1XEMA 2OS1A 5JF5A 4WXLA 1Q1YA 1V3YA 4JE6A 5KOBA 4DR9A 1SZZA 4NT8A 3UWAA 3U7NA 1ICJA 5CVPA 1DFFA 1RQCA 3M6QA 1LMHA 3L87A 3U7KA 5JF3A 5JF1A 4JE7A 3G6NA 1G2AA 1VEVA 3O3JA 2EW7A 3CMDA 1LQWA 5JF8A 3U7MA 1XEOA 4AL2A 5JEXA 3E3UA 1LM6A 5E5DA 1WS1A 1BS7A 3FWXA 5I2BA 2AIAA 2AI7A 1IX1A 2AIEP 1LM4A 2KMNA 2OKLA 1WS0A 3STRP
chains in the Genus database with same CATH topology
3PN4A 1BS4A 2DEFA 3QU1A 1BS6A 3K6LA 3PN3A 5CP0A 3PN5A 5JF6A 1N5NA 1XENA 1LRYA 2OS0A 5CWXA 3SW8P 4AZ4A 5CPDA 1ZXZA 1ZY1A 3PN6A 2AI8A 2W3TA 1DEFA 2EW6A 3SVJP 3M6OA 5JF0A 5JEYA 5CXJA 1RL4A 5CVQA 2EW5A 4E9AA 1VEYA 3G5PA 3CPMA 1BS5A 3UWBA 1JYMA 5HGWA 5JF4A 5CVKA 1BSZA 1VEZA 5CX0A 4JE8A 3U7LA 2AI9A 2OS3A 3G5KA 5JEZA 3M6RA 5T8ZA 5CY8A 5J46A 3OCAA 1BSKA 1LRUA 4E9BA 2W3UA 5JF7A 1LQYA 4DR8A 1BSJA 5JF2A 1BS8A 3PN2A 1S17A 1G27A 3M6PA 4AL3A 5CY7A 1Y6HA 1LMEA 1ZY0A 5CWYA 4EOXP 1SV2A 4WXKA 3U04A 1XEMA 2OS1A 5JF5A 4WXLA 1Q1YA 1V3YA 4JE6A 5KOBA 4DR9A 1SZZA 4NT8A 3UWAA 3U7NA 1ICJA 5CVPA 1DFFA 1RQCA 3M6QA 1LMHA 3L87A 3U7KA 5JF3A 5JF1A 4JE7A 3G6NA 1G2AA 1VEVA 3O3JA 2EW7A 3CMDA 1LQWA 5JF8A 3U7MA 1XEOA 4AL2A 5JEXA 3E3UA 1LM6A 5E5DA 1WS1A 1BS7A 3FWXA 5I2BA 2AIAA 2AI7A 1IX1A 2AIEP 1LM4A 2KMNA 2OKLA 1WS0A 3STRP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PN4 A;  1BS4 A;  2DEF A;  3QU1 A;  1BS6 A;  3K6L A;  3PN3 A;  5CP0 A;  3PN5 A;  5JF6 A;  1N5N A;  1XEN A;  1LRY A;  2OS0 A;  5CWX A;  3SW8 P;  4AZ4 A;  5CPD A;  1ZXZ A;  1ZY1 A;  3PN6 A;  2AI8 A;  2W3T A;  1DEF A;  2EW6 A;  3SVJ P;  3M6O A;  5JF0 A;  5JEY A;  5CXJ A;  1RL4 A;  5CVQ A;  2EW5 A;  4E9A A;  1VEY A;  3G5P A;  3CPM A;  1BS5 A;  3UWB A;  1JYM A;  5HGW A;  5JF4 A;  5CVK A;  1BSZ A;  1VEZ A;  5CX0 A;  4JE8 A;  3U7L A;  2AI9 A;  2OS3 A;  3G5K A;  5JEZ A;  3M6R A;  5T8Z A;  5CY8 A;  5J46 A;  3OCA A;  1BSK A;  1LRU A;  4E9B A;  2W3U A;  5JF7 A;  1LQY A;  4DR8 A;  1BSJ A;  5JF2 A;  1BS8 A;  3PN2 A;  1S17 A;  1G27 A;  3M6P A;  4AL3 A;  5CY7 A;  1Y6H A;  1LME A;  1ZY0 A;  5CWY A;  4EOX P;  1SV2 A;  4WXK A;  3U04 A;  1XEM A;  2OS1 A;  5JF5 A;  4WXL A;  1Q1Y A;  1V3Y A;  4JE6 A;  5KOB A;  4DR9 A;  1SZZ A;  4NT8 A;  3UWA A;  3U7N A;  1ICJ A;  5CVP A;  1DFF A;  1RQC A;  3M6Q A;  1LMH A;  3L87 A;  3U7K A;  5JF3 A;  5JF1 A;  4JE7 A;  3G6N A;  1G2A A;  1VEV A;  3O3J A;  2EW7 A;  3CMD A;  1LQW A;  5JF8 A;  3U7M A;  1XEO A;  4AL2 A;  5JEX A;  3E3U A;  1LM6 A;  5E5D A;  1WS1 A;  1BS7 A;  3FWX A;  5I2B A;  2AIA A;  2AI7 A;  1IX1 A;  2AIE P;  1LM4 A;  2KMN A;  2OKL A;  1WS0 A;  3STR P; 
#chains in the Genus database with same CATH topology
 3PN4 A;  1BS4 A;  2DEF A;  3QU1 A;  1BS6 A;  3K6L A;  3PN3 A;  5CP0 A;  3PN5 A;  5JF6 A;  1N5N A;  1XEN A;  1LRY A;  2OS0 A;  5CWX A;  3SW8 P;  4AZ4 A;  5CPD A;  1ZXZ A;  1ZY1 A;  3PN6 A;  2AI8 A;  2W3T A;  1DEF A;  2EW6 A;  3SVJ P;  3M6O A;  5JF0 A;  5JEY A;  5CXJ A;  1RL4 A;  5CVQ A;  2EW5 A;  4E9A A;  1VEY A;  3G5P A;  3CPM A;  1BS5 A;  3UWB A;  1JYM A;  5HGW A;  5JF4 A;  5CVK A;  1BSZ A;  1VEZ A;  5CX0 A;  4JE8 A;  3U7L A;  2AI9 A;  2OS3 A;  3G5K A;  5JEZ A;  3M6R A;  5T8Z A;  5CY8 A;  5J46 A;  3OCA A;  1BSK A;  1LRU A;  4E9B A;  2W3U A;  5JF7 A;  1LQY A;  4DR8 A;  1BSJ A;  5JF2 A;  1BS8 A;  3PN2 A;  1S17 A;  1G27 A;  3M6P A;  4AL3 A;  5CY7 A;  1Y6H A;  1LME A;  1ZY0 A;  5CWY A;  4EOX P;  1SV2 A;  4WXK A;  3U04 A;  1XEM A;  2OS1 A;  5JF5 A;  4WXL A;  1Q1Y A;  1V3Y A;  4JE6 A;  5KOB A;  4DR9 A;  1SZZ A;  4NT8 A;  3UWA A;  3U7N A;  1ICJ A;  5CVP A;  1DFF A;  1RQC A;  3M6Q A;  1LMH A;  3L87 A;  3U7K A;  5JF3 A;  5JF1 A;  4JE7 A;  3G6N A;  1G2A A;  1VEV A;  3O3J A;  2EW7 A;  3CMD A;  1LQW A;  5JF8 A;  3U7M A;  1XEO A;  4AL2 A;  5JEX A;  3E3U A;  1LM6 A;  5E5D A;  1WS1 A;  1BS7 A;  3FWX A;  5I2B A;  2AIA A;  2AI7 A;  1IX1 A;  2AIE P;  1LM4 A;  2KMN A;  2OKL A;  1WS0 A;  3STR P; 
#chains in the Genus database with same CATH homology
 3PN4 A;  1BS4 A;  2DEF A;  3QU1 A;  1BS6 A;  3K6L A;  3PN3 A;  5CP0 A;  3PN5 A;  5JF6 A;  1N5N A;  1XEN A;  1LRY A;  2OS0 A;  5CWX A;  3SW8 P;  4AZ4 A;  5CPD A;  1ZXZ A;  1ZY1 A;  3PN6 A;  2AI8 A;  2W3T A;  1DEF A;  2EW6 A;  3SVJ P;  3M6O A;  5JF0 A;  5JEY A;  5CXJ A;  1RL4 A;  5CVQ A;  2EW5 A;  4E9A A;  1VEY A;  3G5P A;  3CPM A;  1BS5 A;  3UWB A;  1JYM A;  5HGW A;  5JF4 A;  5CVK A;  1BSZ A;  1VEZ A;  5CX0 A;  4JE8 A;  3U7L A;  2AI9 A;  2OS3 A;  3G5K A;  5JEZ A;  3M6R A;  5T8Z A;  5CY8 A;  5J46 A;  3OCA A;  1BSK A;  1LRU A;  4E9B A;  2W3U A;  5JF7 A;  1LQY A;  4DR8 A;  1BSJ A;  5JF2 A;  1BS8 A;  3PN2 A;  1S17 A;  1G27 A;  3M6P A;  4AL3 A;  5CY7 A;  1Y6H A;  1LME A;  1ZY0 A;  5CWY A;  4EOX P;  1SV2 A;  4WXK A;  3U04 A;  1XEM A;  2OS1 A;  5JF5 A;  4WXL A;  1Q1Y A;  1V3Y A;  4JE6 A;  5KOB A;  4DR9 A;  1SZZ A;  4NT8 A;  3UWA A;  3U7N A;  1ICJ A;  5CVP A;  1DFF A;  1RQC A;  3M6Q A;  1LMH A;  3L87 A;  3U7K A;  5JF3 A;  5JF1 A;  4JE7 A;  3G6N A;  1G2A A;  1VEV A;  3O3J A;  2EW7 A;  3CMD A;  1LQW A;  5JF8 A;  3U7M A;  1XEO A;  4AL2 A;  5JEX A;  3E3U A;  1LM6 A;  5E5D A;  1WS1 A;  1BS7 A;  3FWX A;  5I2B A;  2AIA A;  2AI7 A;  1IX1 A;  2AIE P;  1LM4 A;  2KMN A;  2OKL A;  1WS0 A;  3STR P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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