4AOOA

B. subtilis dutpase yncf in complex with du ppi and mg in h32
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
143
structure length
143
Chain Sequence
TMQIKIKYLDETQTRISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHLGNEDRGGLGSTGTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YN
publication title Tying Down the Arm in Bacillus Dutpase: Structure and Mechanism
pubmed doi rcsb
source organism Bacillus subtilis
total genus 23
structure length 143
sequence length 143
chains with identical sequence B, C, D
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2012-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4aooA00
3TQ5A 3TP1A 3TPWA 2ZDCA 2WE3A 2HR6A 1SMCA 3TPSA 1F7RA 3ZF5A 2XCEA 2OKDA 1MQ7A 2D4MA 3ZF2A 4AO5A 3TPNA 5CCTA 4GK6A 3TQ3A 2BSYA 2PY4A 3ARNA 1SJNA 2J4QA 2Y8CA 1RN8A 3T60A 2WE2A 1EU5A 1PKHA 3T6YA 3C2TA 2HXDA 3MDXA 1DUDA 2OL1A 1RNJA 2BAZA 4APZ1 4OOQA 2R9QA 4A6AA 1F7QA 1F7OA 1OGHA 1Q5UX 3ZF6A 1DUCA 3TRLA 5ECTA 3TPYA 3ZF1A 3ZF0A 4LHRA 1Q5HA 2QXXA 4GV8A 4XJCA 3ZF4A 5CCOA 3TRNA 1F7DA 2OKEA 3GF0A 1F7PA 3ZEZA 4WRKA 2YZJA 1F7KA 3TQ4A 2HQUA 2HXBA 3CA9A 1EUWA 2OL0A 2XX6A 4B0HA 1DUNA 4DHKA 2QLPA 1XS6A 1XS1A 1VYQA 3C3IA 4GCYA 3T64A 1DUTA 2XCDA 3KM3A 3TTAA 2V9XA 1SLHA 1SNFA 3ARAA 3F4FA 1SIXA 3H6XA 4AOOA 4AOZA 5EDDA 2PC5A 3T70A 1SYLA 3ECYA 2D4LA 2BT1A 3TSLA 2HRMA 2XY3A 3P48A 3HHQA 1SM8A 3ZF3A 1PKJA 1SEHA 3MBQA 1PKKA 3EHWA 2Y1TA 5F9KA 2D4NA 3TS6A 1XS4A 3LQWA 2WE1A 4OOPA 1F7NA 3SO2A 3LOJA 1DUPA 3I93A 2WE0A 3HZAA 2J4HA 3TQZA 3H6DA 2OKBA
chains in the Genus database with same CATH superfamily
3TQ5A 3TP1A 3TPWA 2ZDCA 2WE3A 2HR6A 1SMCA 3TPSA 1F7RA 3ZF5A 2XCEA 2OKDA 1MQ7A 2D4MA 3ZF2A 4AO5A 3TPNA 5CCTA 4GK6A 3TQ3A 2BSYA 2PY4A 3ARNA 1SJNA 2J4QA 2Y8CA 1RN8A 3T60A 2WE2A 1EU5A 1PKHA 3T6YA 3C2TA 2HXDA 3MDXA 1DUDA 2OL1A 1RNJA 2BAZA 4APZ1 4OOQA 2R9QA 4A6AA 1F7QA 1F7OA 1OGHA 1Q5UX 3ZF6A 1DUCA 3TRLA 5ECTA 3TPYA 3ZF1A 3ZF0A 4LHRA 1Q5HA 2QXXA 4GV8A 4XJCA 3ZF4A 1TULA 5CCOA 3TRNA 1F7DA 2OKEA 3GF0A 1F7PA 3ZEZA 4WRKA 2YZJA 1F7KA 3TQ4A 2HQUA 2HXBA 3CA9A 1EUWA 2OL0A 2XX6A 4B0HA 1DUNA 4DHKA 2QLPA 1XS6A 1XS1A 1VYQA 3C3IA 4GCYA 3T64A 1DUTA 2XCDA 3KM3A 3TTAA 2V9XA 1SLHA 1SNFA 3ARAA 3F4FA 1SIXA 3H6XA 4AOOA 4AOZA 5EDDA 2PC5A 3T70A 1SYLA 3ECYA 2D4LA 2BT1A 3TSLA 2HRMA 2XY3A 3P48A 3HHQA 1SM8A 3ZF3A 1PKJA 1SEHA 3MBQA 1PKKA 3EHWA 2Y1TA 5F9KA 2D4NA 3TS6A 1XS4A 3LQWA 2WE1A 4OOPA 1F7NA 3SO2A 3LOJA 1DUPA 3I93A 2WE0A 3HZAA 2J4HA 3TQZA 3H6DA 2OKBA
chains in the Genus database with same CATH topology
3TQ5A 3TP1A 3TPWA 2ZDCA 2WE3A 2HR6A 1SMCA 3TPSA 1F7RA 3ZF5A 2XCEA 2OKDA 1MQ7A 2D4MA 3ZF2A 4AO5A 3TPNA 5CCTA 4GK6A 3TQ3A 2BSYA 2PY4A 3ARNA 1SJNA 2J4QA 2Y8CA 1RN8A 3T60A 2WE2A 1EU5A 1PKHA 3T6YA 3C2TA 2HXDA 3MDXA 1DUDA 2OL1A 1RNJA 2BAZA 4APZ1 4OOQA 2R9QA 4A6AA 1F7QA 1F7OA 1OGHA 1Q5UX 3ZF6A 1DUCA 3TRLA 5ECTA 3TPYA 3ZF1A 3ZF0A 4LHRA 1Q5HA 2QXXA 4GV8A 4XJCA 3ZF4A 5CCOA 3TRNA 1F7DA 2OKEA 3GF0A 1F7PA 3ZEZA 4WRKA 2YZJA 1F7KA 3TQ4A 2HQUA 2HXBA 3CA9A 1EUWA 2OL0A 2XX6A 4B0HA 1DUNA 4DHKA 2QLPA 1XS6A 1XS1A 1VYQA 3C3IA 4GCYA 3T64A 1DUTA 2XCDA 3KM3A 3TTAA 2V9XA 1SLHA 1SNFA 3ARAA 3F4FA 1SIXA 3H6XA 4AOOA 4AOZA 5EDDA 2PC5A 3T70A 1SYLA 3ECYA 2D4LA 2BT1A 3TSLA 2HRMA 2XY3A 3P48A 3HHQA 1SM8A 3ZF3A 1PKJA 1SEHA 3MBQA 1PKKA 3EHWA 2Y1TA 5F9KA 2D4NA 3TS6A 1XS4A 3LQWA 2WE1A 4OOPA 1F7NA 3SO2A 3LOJA 1DUPA 3I93A 2WE0A 3HZAA 2J4HA 3TQZA 3H6DA 2OKBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TQ5 A;  3TP1 A;  3TPW A;  2ZDC A;  2WE3 A;  2HR6 A;  1SMC A;  3TPS A;  1F7R A;  3ZF5 A;  2XCE A;  2OKD A;  1MQ7 A;  2D4M A;  3ZF2 A;  4AO5 A;  3TPN A;  5CCT A;  4GK6 A;  3TQ3 A;  2BSY A;  2PY4 A;  3ARN A;  1SJN A;  2J4Q A;  2Y8C A;  1RN8 A;  3T60 A;  2WE2 A;  1EU5 A;  1PKH A;  3T6Y A;  3C2T A;  2HXD A;  3MDX A;  1DUD A;  2OL1 A;  1RNJ A;  2BAZ A;  4APZ 1;  4OOQ A;  2R9Q A;  4A6A A;  1F7Q A;  1F7O A;  1OGH A;  1Q5U X;  3ZF6 A;  1DUC A;  3TRL A;  5ECT A;  3TPY A;  3ZF1 A;  3ZF0 A;  4LHR A;  1Q5H A;  2QXX A;  4GV8 A;  4XJC A;  3ZF4 A;  5CCO A;  3TRN A;  1F7D A;  2OKE A;  3GF0 A;  1F7P A;  3ZEZ A;  4WRK A;  2YZJ A;  1F7K A;  3TQ4 A;  2HQU A;  2HXB A;  3CA9 A;  1EUW A;  2OL0 A;  2XX6 A;  4B0H A;  1DUN A;  4DHK A;  2QLP A;  1XS6 A;  1XS1 A;  1VYQ A;  3C3I A;  4GCY A;  3T64 A;  1DUT A;  2XCD A;  3KM3 A;  3TTA A;  2V9X A;  1SLH A;  1SNF A;  3ARA A;  3F4F A;  1SIX A;  3H6X A;  4AOO A;  4AOZ A;  5EDD A;  2PC5 A;  3T70 A;  1SYL A;  3ECY A;  2D4L A;  2BT1 A;  3TSL A;  2HRM A;  2XY3 A;  3P48 A;  3HHQ A;  1SM8 A;  3ZF3 A;  1PKJ A;  1SEH A;  3MBQ A;  1PKK A;  3EHW A;  2Y1T A;  5F9K A;  2D4N A;  3TS6 A;  1XS4 A;  3LQW A;  2WE1 A;  4OOP A;  1F7N A;  3SO2 A;  3LOJ A;  1DUP A;  3I93 A;  2WE0 A;  3HZA A;  2J4H A;  3TQZ A;  3H6D A;  2OKB A; 
#chains in the Genus database with same CATH topology
 3TQ5 A;  3TP1 A;  3TPW A;  2ZDC A;  2WE3 A;  2HR6 A;  1SMC A;  3TPS A;  1F7R A;  3ZF5 A;  2XCE A;  2OKD A;  1MQ7 A;  2D4M A;  3ZF2 A;  4AO5 A;  3TPN A;  5CCT A;  4GK6 A;  3TQ3 A;  2BSY A;  2PY4 A;  3ARN A;  1SJN A;  2J4Q A;  2Y8C A;  1RN8 A;  3T60 A;  2WE2 A;  1EU5 A;  1PKH A;  3T6Y A;  3C2T A;  2HXD A;  3MDX A;  1DUD A;  2OL1 A;  1RNJ A;  2BAZ A;  4APZ 1;  4OOQ A;  2R9Q A;  4A6A A;  1F7Q A;  1F7O A;  1OGH A;  1Q5U X;  3ZF6 A;  1DUC A;  3TRL A;  5ECT A;  3TPY A;  3ZF1 A;  3ZF0 A;  4LHR A;  1Q5H A;  2QXX A;  4GV8 A;  4XJC A;  3ZF4 A;  1TUL A;  5CCO A;  3TRN A;  1F7D A;  2OKE A;  3GF0 A;  1F7P A;  3ZEZ A;  4WRK A;  2YZJ A;  1F7K A;  3TQ4 A;  2HQU A;  2HXB A;  3CA9 A;  1EUW A;  2OL0 A;  2XX6 A;  4B0H A;  1DUN A;  4DHK A;  2QLP A;  1XS6 A;  1XS1 A;  1VYQ A;  3C3I A;  4GCY A;  3T64 A;  1DUT A;  2XCD A;  3KM3 A;  3TTA A;  2V9X A;  1SLH A;  1SNF A;  3ARA A;  3F4F A;  1SIX A;  3H6X A;  4AOO A;  4AOZ A;  5EDD A;  2PC5 A;  3T70 A;  1SYL A;  3ECY A;  2D4L A;  2BT1 A;  3TSL A;  2HRM A;  2XY3 A;  3P48 A;  3HHQ A;  1SM8 A;  3ZF3 A;  1PKJ A;  1SEH A;  3MBQ A;  1PKK A;  3EHW A;  2Y1T A;  5F9K A;  2D4N A;  3TS6 A;  1XS4 A;  3LQW A;  2WE1 A;  4OOP A;  1F7N A;  3SO2 A;  3LOJ A;  1DUP A;  3I93 A;  2WE0 A;  3HZA A;  2J4H A;  3TQZ A;  3H6D A;  2OKB A; 
#chains in the Genus database with same CATH homology
 3TQ5 A;  3TP1 A;  3TPW A;  2ZDC A;  2WE3 A;  2HR6 A;  1SMC A;  3TPS A;  1F7R A;  3ZF5 A;  2XCE A;  2OKD A;  1MQ7 A;  2D4M A;  3ZF2 A;  4AO5 A;  3TPN A;  5CCT A;  4GK6 A;  3TQ3 A;  2BSY A;  2PY4 A;  3ARN A;  1SJN A;  2J4Q A;  2Y8C A;  1RN8 A;  3T60 A;  2WE2 A;  1EU5 A;  1PKH A;  3T6Y A;  3C2T A;  2HXD A;  3MDX A;  1DUD A;  2OL1 A;  1RNJ A;  2BAZ A;  4APZ 1;  4OOQ A;  2R9Q A;  4A6A A;  1F7Q A;  1F7O A;  1OGH A;  1Q5U X;  3ZF6 A;  1DUC A;  3TRL A;  5ECT A;  3TPY A;  3ZF1 A;  3ZF0 A;  4LHR A;  1Q5H A;  2QXX A;  4GV8 A;  4XJC A;  3ZF4 A;  5CCO A;  3TRN A;  1F7D A;  2OKE A;  3GF0 A;  1F7P A;  3ZEZ A;  4WRK A;  2YZJ A;  1F7K A;  3TQ4 A;  2HQU A;  2HXB A;  3CA9 A;  1EUW A;  2OL0 A;  2XX6 A;  4B0H A;  1DUN A;  4DHK A;  2QLP A;  1XS6 A;  1XS1 A;  1VYQ A;  3C3I A;  4GCY A;  3T64 A;  1DUT A;  2XCD A;  3KM3 A;  3TTA A;  2V9X A;  1SLH A;  1SNF A;  3ARA A;  3F4F A;  1SIX A;  3H6X A;  4AOO A;  4AOZ A;  5EDD A;  2PC5 A;  3T70 A;  1SYL A;  3ECY A;  2D4L A;  2BT1 A;  3TSL A;  2HRM A;  2XY3 A;  3P48 A;  3HHQ A;  1SM8 A;  3ZF3 A;  1PKJ A;  1SEH A;  3MBQ A;  1PKK A;  3EHW A;  2Y1T A;  5F9K A;  2D4N A;  3TS6 A;  1XS4 A;  3LQW A;  2WE1 A;  4OOP A;  1F7N A;  3SO2 A;  3LOJ A;  1DUP A;  3I93 A;  2WE0 A;  3HZA A;  2J4H A;  3TQZ A;  3H6D A;  2OKB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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