4APZ1

Structure of b. subtilis genomic dutpase yncf in complex with du, ppi and mg in p1
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
142
structure length
142
Chain Sequence
MQIKIKYLDETQTRISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHLGNEDRGGLGSTGTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YN
publication title Tying Down the Arm in Bacillus Dutpase: Structure and Mechanism
pubmed doi rcsb
source organism Bacillus subtilis
total genus 23
structure length 142
sequence length 142
chains with identical sequence 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2012-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4apz100
1XS4A 1F7PA 3LQWA 1SJNA 1VYQA 1RNJA 3C3IA 3TPSA 1SMCA 3ZF6A 3ZF2A 1DUNA 3TPWA 1F7KA 3ARAA 2D4MA 1EUWA 3LOJA 3TTAA 3MDXA 1DUPA 4AO5A 2Y1TA 4GK6A 1SEHA 1PKJA 3ZF3A 3ZEZA 3T6YA 3I93A 2OKDA 3KM3A 3T64A 4GV8A 4WRKA 1F7RA 2OKBA 2OKEA 2YZJA 2XX6A 3C2TA 1MQ7A 3ZF4A 1SIXA 3SO2A 3TQ3A 5ECTA 2J4QA 1XS1A 4OOQA 1F7NA 2OL0A 5CCTA 2XCDA 1Q5UX 3TRNA 3ZF5A 4B0HA 2HR6A 3H6XA 3ARNA 4AOZA 2D4NA 2HQUA 2BSYA 4AOOA 2V9XA 4A6AA 3EHWA 4DHKA 2WE2A 2J4HA 2PY4A 1DUCA 5CCOA 3GF0A 2WE3A 3TRLA 3CA9A 2Y8CA 2R9QA 2HRMA 4LHRA 3TSLA 3ZF1A 3T70A 1SYLA 2HXBA 1DUDA 3ECYA 2WE1A 2XY3A 4GCYA 1Q5HA 2BAZA 2OL1A 3H6DA 4XJCA 2QXXA 1SLHA 3TPNA 1PKHA 1SM8A 2PC5A 4APZ1 3HZAA 3TS6A 1F7OA 2D4LA 1PKKA 5F9KA 1RN8A 2XCEA 1XS6A 3MBQA 1OGHA 2QLPA 4OOPA 2BT1A 3TQ5A 3P48A 3ZF0A 1EU5A 3TPYA 3HHQA 2HXDA 3TQZA 3TQ4A 1F7QA 2ZDCA 3F4FA 1F7DA 2WE0A 3TP1A 1SNFA 3T60A 5EDDA 1DUTA
chains in the Genus database with same CATH superfamily
1XS4A 1F7PA 3LQWA 1SJNA 1VYQA 1RNJA 3C3IA 3TPSA 1SMCA 3ZF6A 3ZF2A 1DUNA 3TPWA 1F7KA 3ARAA 2D4MA 1EUWA 3LOJA 3TTAA 3MDXA 1DUPA 4AO5A 2Y1TA 4GK6A 1SEHA 1PKJA 3ZF3A 3ZEZA 3T6YA 1TULA 3I93A 2OKDA 3KM3A 3T64A 4GV8A 4WRKA 1F7RA 2OKBA 2OKEA 2YZJA 2XX6A 3C2TA 1MQ7A 3ZF4A 1SIXA 3SO2A 3TQ3A 5ECTA 2J4QA 1XS1A 4OOQA 1F7NA 2OL0A 5CCTA 2XCDA 1Q5UX 3TRNA 3ZF5A 4B0HA 2HR6A 3H6XA 3ARNA 4AOZA 2D4NA 2HQUA 2BSYA 4AOOA 2V9XA 4A6AA 3EHWA 4DHKA 2WE2A 2J4HA 2PY4A 1DUCA 5CCOA 3GF0A 2WE3A 3TRLA 3CA9A 2Y8CA 2R9QA 2HRMA 4LHRA 3TSLA 3ZF1A 3T70A 1SYLA 2HXBA 1DUDA 3ECYA 2WE1A 2XY3A 4GCYA 1Q5HA 2BAZA 2OL1A 3H6DA 4XJCA 2QXXA 1SLHA 3TPNA 1PKHA 1SM8A 2PC5A 4APZ1 3HZAA 3TS6A 1F7OA 2D4LA 1PKKA 5F9KA 1RN8A 2XCEA 1XS6A 3MBQA 1OGHA 2QLPA 4OOPA 2BT1A 3TQ5A 3P48A 3ZF0A 1EU5A 3TPYA 3HHQA 2HXDA 3TQZA 3TQ4A 1F7QA 2ZDCA 3F4FA 1F7DA 2WE0A 3TP1A 1SNFA 3T60A 5EDDA 1DUTA
chains in the Genus database with same CATH topology
1XS4A 1F7PA 3LQWA 1SJNA 1VYQA 1RNJA 3C3IA 3TPSA 1SMCA 3ZF6A 3ZF2A 1DUNA 3TPWA 1F7KA 3ARAA 2D4MA 1EUWA 3LOJA 3TTAA 3MDXA 1DUPA 4AO5A 2Y1TA 4GK6A 1SEHA 1PKJA 3ZF3A 3ZEZA 3T6YA 3I93A 2OKDA 3KM3A 3T64A 4GV8A 4WRKA 1F7RA 2OKBA 2OKEA 2YZJA 2XX6A 3C2TA 1MQ7A 3ZF4A 1SIXA 3SO2A 3TQ3A 5ECTA 2J4QA 1XS1A 4OOQA 1F7NA 2OL0A 5CCTA 2XCDA 1Q5UX 3TRNA 3ZF5A 4B0HA 2HR6A 3H6XA 3ARNA 4AOZA 2D4NA 2HQUA 2BSYA 4AOOA 2V9XA 4A6AA 3EHWA 4DHKA 2WE2A 2J4HA 2PY4A 1DUCA 5CCOA 3GF0A 2WE3A 3TRLA 3CA9A 2Y8CA 2R9QA 2HRMA 4LHRA 3TSLA 3ZF1A 3T70A 1SYLA 2HXBA 1DUDA 3ECYA 2WE1A 2XY3A 4GCYA 1Q5HA 2BAZA 2OL1A 3H6DA 4XJCA 2QXXA 1SLHA 3TPNA 1PKHA 1SM8A 2PC5A 4APZ1 3HZAA 3TS6A 1F7OA 2D4LA 1PKKA 5F9KA 1RN8A 2XCEA 1XS6A 3MBQA 1OGHA 2QLPA 4OOPA 2BT1A 3TQ5A 3P48A 3ZF0A 1EU5A 3TPYA 3HHQA 2HXDA 3TQZA 3TQ4A 1F7QA 2ZDCA 3F4FA 1F7DA 2WE0A 3TP1A 1SNFA 3T60A 5EDDA 1DUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XS4 A;  1F7P A;  3LQW A;  1SJN A;  1VYQ A;  1RNJ A;  3C3I A;  3TPS A;  1SMC A;  3ZF6 A;  3ZF2 A;  1DUN A;  3TPW A;  1F7K A;  3ARA A;  2D4M A;  1EUW A;  3LOJ A;  3TTA A;  3MDX A;  1DUP A;  4AO5 A;  2Y1T A;  4GK6 A;  1SEH A;  1PKJ A;  3ZF3 A;  3ZEZ A;  3T6Y A;  3I93 A;  2OKD A;  3KM3 A;  3T64 A;  4GV8 A;  4WRK A;  1F7R A;  2OKB A;  2OKE A;  2YZJ A;  2XX6 A;  3C2T A;  1MQ7 A;  3ZF4 A;  1SIX A;  3SO2 A;  3TQ3 A;  5ECT A;  2J4Q A;  1XS1 A;  4OOQ A;  1F7N A;  2OL0 A;  5CCT A;  2XCD A;  1Q5U X;  3TRN A;  3ZF5 A;  4B0H A;  2HR6 A;  3H6X A;  3ARN A;  4AOZ A;  2D4N A;  2HQU A;  2BSY A;  4AOO A;  2V9X A;  4A6A A;  3EHW A;  4DHK A;  2WE2 A;  2J4H A;  2PY4 A;  1DUC A;  5CCO A;  3GF0 A;  2WE3 A;  3TRL A;  3CA9 A;  2Y8C A;  2R9Q A;  2HRM A;  4LHR A;  3TSL A;  3ZF1 A;  3T70 A;  1SYL A;  2HXB A;  1DUD A;  3ECY A;  2WE1 A;  2XY3 A;  4GCY A;  1Q5H A;  2BAZ A;  2OL1 A;  3H6D A;  4XJC A;  2QXX A;  1SLH A;  3TPN A;  1PKH A;  1SM8 A;  2PC5 A;  4APZ 1;  3HZA A;  3TS6 A;  1F7O A;  2D4L A;  1PKK A;  5F9K A;  1RN8 A;  2XCE A;  1XS6 A;  3MBQ A;  1OGH A;  2QLP A;  4OOP A;  2BT1 A;  3TQ5 A;  3P48 A;  3ZF0 A;  1EU5 A;  3TPY A;  3HHQ A;  2HXD A;  3TQZ A;  3TQ4 A;  1F7Q A;  2ZDC A;  3F4F A;  1F7D A;  2WE0 A;  3TP1 A;  1SNF A;  3T60 A;  5EDD A;  1DUT A; 
#chains in the Genus database with same CATH topology
 1XS4 A;  1F7P A;  3LQW A;  1SJN A;  1VYQ A;  1RNJ A;  3C3I A;  3TPS A;  1SMC A;  3ZF6 A;  3ZF2 A;  1DUN A;  3TPW A;  1F7K A;  3ARA A;  2D4M A;  1EUW A;  3LOJ A;  3TTA A;  3MDX A;  1DUP A;  4AO5 A;  2Y1T A;  4GK6 A;  1SEH A;  1PKJ A;  3ZF3 A;  3ZEZ A;  3T6Y A;  1TUL A;  3I93 A;  2OKD A;  3KM3 A;  3T64 A;  4GV8 A;  4WRK A;  1F7R A;  2OKB A;  2OKE A;  2YZJ A;  2XX6 A;  3C2T A;  1MQ7 A;  3ZF4 A;  1SIX A;  3SO2 A;  3TQ3 A;  5ECT A;  2J4Q A;  1XS1 A;  4OOQ A;  1F7N A;  2OL0 A;  5CCT A;  2XCD A;  1Q5U X;  3TRN A;  3ZF5 A;  4B0H A;  2HR6 A;  3H6X A;  3ARN A;  4AOZ A;  2D4N A;  2HQU A;  2BSY A;  4AOO A;  2V9X A;  4A6A A;  3EHW A;  4DHK A;  2WE2 A;  2J4H A;  2PY4 A;  1DUC A;  5CCO A;  3GF0 A;  2WE3 A;  3TRL A;  3CA9 A;  2Y8C A;  2R9Q A;  2HRM A;  4LHR A;  3TSL A;  3ZF1 A;  3T70 A;  1SYL A;  2HXB A;  1DUD A;  3ECY A;  2WE1 A;  2XY3 A;  4GCY A;  1Q5H A;  2BAZ A;  2OL1 A;  3H6D A;  4XJC A;  2QXX A;  1SLH A;  3TPN A;  1PKH A;  1SM8 A;  2PC5 A;  4APZ 1;  3HZA A;  3TS6 A;  1F7O A;  2D4L A;  1PKK A;  5F9K A;  1RN8 A;  2XCE A;  1XS6 A;  3MBQ A;  1OGH A;  2QLP A;  4OOP A;  2BT1 A;  3TQ5 A;  3P48 A;  3ZF0 A;  1EU5 A;  3TPY A;  3HHQ A;  2HXD A;  3TQZ A;  3TQ4 A;  1F7Q A;  2ZDC A;  3F4F A;  1F7D A;  2WE0 A;  3TP1 A;  1SNF A;  3T60 A;  5EDD A;  1DUT A; 
#chains in the Genus database with same CATH homology
 1XS4 A;  1F7P A;  3LQW A;  1SJN A;  1VYQ A;  1RNJ A;  3C3I A;  3TPS A;  1SMC A;  3ZF6 A;  3ZF2 A;  1DUN A;  3TPW A;  1F7K A;  3ARA A;  2D4M A;  1EUW A;  3LOJ A;  3TTA A;  3MDX A;  1DUP A;  4AO5 A;  2Y1T A;  4GK6 A;  1SEH A;  1PKJ A;  3ZF3 A;  3ZEZ A;  3T6Y A;  3I93 A;  2OKD A;  3KM3 A;  3T64 A;  4GV8 A;  4WRK A;  1F7R A;  2OKB A;  2OKE A;  2YZJ A;  2XX6 A;  3C2T A;  1MQ7 A;  3ZF4 A;  1SIX A;  3SO2 A;  3TQ3 A;  5ECT A;  2J4Q A;  1XS1 A;  4OOQ A;  1F7N A;  2OL0 A;  5CCT A;  2XCD A;  1Q5U X;  3TRN A;  3ZF5 A;  4B0H A;  2HR6 A;  3H6X A;  3ARN A;  4AOZ A;  2D4N A;  2HQU A;  2BSY A;  4AOO A;  2V9X A;  4A6A A;  3EHW A;  4DHK A;  2WE2 A;  2J4H A;  2PY4 A;  1DUC A;  5CCO A;  3GF0 A;  2WE3 A;  3TRL A;  3CA9 A;  2Y8C A;  2R9Q A;  2HRM A;  4LHR A;  3TSL A;  3ZF1 A;  3T70 A;  1SYL A;  2HXB A;  1DUD A;  3ECY A;  2WE1 A;  2XY3 A;  4GCY A;  1Q5H A;  2BAZ A;  2OL1 A;  3H6D A;  4XJC A;  2QXX A;  1SLH A;  3TPN A;  1PKH A;  1SM8 A;  2PC5 A;  4APZ 1;  3HZA A;  3TS6 A;  1F7O A;  2D4L A;  1PKK A;  5F9K A;  1RN8 A;  2XCE A;  1XS6 A;  3MBQ A;  1OGH A;  2QLP A;  4OOP A;  2BT1 A;  3TQ5 A;  3P48 A;  3ZF0 A;  1EU5 A;  3TPY A;  3HHQ A;  2HXD A;  3TQZ A;  3TQ4 A;  1F7Q A;  2ZDC A;  3F4F A;  1F7D A;  2WE0 A;  3TP1 A;  1SNF A;  3T60 A;  5EDD A;  1DUT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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