4ATMA

Crystal structure of the bar domain of human amphiphysin, isoform 1 at 1.8 angstrom resolution featuring increased order at the n- terminus.
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
221
structure length
221
Chain Sequence
RAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDESLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords AMPHIPHYSIN
publication title Crystal Structure of the Bar Domain of Human Amphiphysin, Isoform 1
rcsb
source organism Homo sapiens
total genus 107
structure length 221
sequence length 221
ec nomenclature
pdb deposition date 2012-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03114 BAR BAR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4atmA00
4H8SA 3OK8A 2ELBA 3CAZA 5C5BB 3SYVA 2X3VA 2YKTA 1I4TA 2C08A 2RAKA 2X3WA 3QNIA 3Q0KA 3Q84A 4NQIA 3HAIA 4WPCA 4AVMA 4BNEA 3I2WA 2Z0VA 2D1LA 2RAIA 1Y2OA 4DYLA 3HAJA 3G9GA 1X03A 3HAHA 3M3WA 1URUA 1WDZA 3ACOA 4FZSA 2X3XA 2Q12A 1I4LA 1ZWWA 4NSWA 2Q13A 4WPEA 3QE6A 5C5BA 3PLTA 2V0OA 4ATMA 2Z0OA 4DCNC 2EFKA 2Z0NA 2EFLA 1I49A 3ABHA 2FICA 3QWEA 3LLLA 2RAJA 4AKVA 2D4CA 1X04A 3DYTA 4I1QA 3SOGA 1I4DA
chains in the Genus database with same CATH superfamily
2ELBA 4R5JA 3I04A 4AZGA 2X3WA 3HAIA 1SU8A 2F7PA 4KIKA 4UDYX 2D1LA 3HAJA 2F7RA 3QNJA 1TQVA 4JN4A 1U00A 3L3OM 3T4AG 1PS3A 3DDFA 4IWOA 3D4ZA 2YL5A 1I4TA 2RAKA 1QWUA 4DYLA 3D4YA 4JNEA 4FZSA 1ZWWA 2QXLA 1QWNA 4E3CA 3I39X 3KAWA 3BUDA 3CAZA 3OK8A 1OA0A 3L3PA 2OW7A 3B52X 4JNFA 2Z0VA 4AZ7A 3A98A 2X3XA 4JWCA 1O7DC 2Z0OA 3O3OB 1GNLA 4UDXX 4R5LA 4JWEA 3I2WA 3ER8C 4FZPA 3D51A 1Y2OA 4HR1B 2JNSA 1R34A 4FZOA 1DKZA 5C5BA 3QE6A 3ABHA 4AZBA 3D2EA 3BVWA 4EZOA 3SYVA 2X3VA 4H6IA 2C08A 3Q0KA 3CVRA 4AVMA 4EZPA 3DX0A 4G6QA 1WDZA 4AZHA 2OO2A 4IM2A 4HY9A 3OWGA 3PLTA 1HWWA 4EZNA 3UITA 3EJPA 3EJTA 3ZEDA 3QWEA 2F18A 3BUBA 2YIVX 4AZIA 4E81A 3T49A 4JWDA 2YKTA 3QNIA 4JWIA 4EZSA 3DPOA 1E2UA 2YLLA 4NPHA 3CV5A 2Q13A 4EZYA 2EFKA 2N3KA 3CZNA 1TQUA 1MJGA 1DKYA 4IM3A 4JLCA 2MI7A 3BLBA 4EZWA 3T48A 3CZSA 2WYIA 2OBMA 3CKDA 1UPXA 3VEAA 3G9GA 1E9VA 5FIGA 3EJSA 1GNTA 3DX4A 3BUPA 4EZQA 4JL9A 3EJRA 1R5EA 1TQWA 4D8JA 1OAOA 3GI7A 4BNEA 1OA1A 3VEBA 3DX2A 3B53X 2OBLA 3O3NB 4AZ5A 4DCNC 2Z0NA 1HTYA 4AZCA 4B9QA 4EZUA 2EX3B 3T46A 2F1BA 3DPPA 2WYHA 2YL9A 2EWFA 4M0MA 2EFLA 4KIKB 2RT6A 4AKVA 4EZXA 4IWPA 4I1QA 2GF4A 2QKWA 3C7NA 4EZRA 4WPCA 3D52A 2LXYA 4R5KA 4R5GA 2YIAA 3D50A 1DKXA 2GAFD 3BVUA 4NSWA 3BVXA 3LVTA 4EZVA 2GA9D 2YL8A 3KDRA 1SU6A 4EZTA 3VKHA 5KBPA 2QFFA 3QA8A 3OHXM 4AZ6A 3HAHA 1URUA 2ZXQA 2WINM 3DX3A 4IWQA 3FD9A 4HYBA 1I4DA 2X5CA 1E1DA 2PMRA 5E84A 4AZCB 4R5IA 1ZYLA 4IW0A 1SUFA 2OW6A 2Q12A 1QX1A 3O3MB 1TQTA 1TQSA 2F7QA 5TKYA 2FICA 3LLLA 2PY6A 5C5BB 2LM0A 3I01A 4F00A 3M3WA 3T47A 4F01A 1W9MA 2Z8YA 2V0OA 2OZNB 4ATMA 1HXKA 1GN9A 4H6HA 1O7DB 4EZZA 3DYTA 1JQKA 3ER9B 1LQ7A 3BUQA 1X03A 3DPQA 4PO2A 1I4LA 1R33A 2ND1A 3F7WA 3ERCC 2YLAA 3RV1A 2JNKA 3SOGA 3DX1A 3Q84A 1YWMA 2YIBA 3KAVA 2NCZA 3D2FA 3ACOA 2F1AA 2KHOA 3B51X 2YL6A 2YI8A 1I49A 3RPMA 3BUIA 2RAJA 2FYVA 2D4CA 2ALWA 1X04A 4H8SA 2O0I1 3DDGA 4NQIA 2RAIA 5FLEX 3RV0A 2ND0A 4WPEA 3BVVA 3BVTA 2YI9A 4IM0A 4FM3A 3EJUA 4HR1A 1SU7A 3LMFA 2F7OA 3EJQA
chains in the Genus database with same CATH topology
4H8SA 3OK8A 2ELBA 3CAZA 5C5BB 3SYVA 2X3VA 2YKTA 1I4TA 2C08A 2RAKA 2X3WA 3QNIA 3Q0KA 3Q84A 4NQIA 3HAIA 4WPCA 4AVMA 4BNEA 3I2WA 2Z0VA 2D1LA 2RAIA 1Y2OA 4DYLA 3HAJA 3G9GA 1X03A 3HAHA 3M3WA 1URUA 1WDZA 3ACOA 4FZSA 2X3XA 2Q12A 1I4LA 1ZWWA 4NSWA 2Q13A 4WPEA 3QE6A 5C5BA 3PLTA 2V0OA 4ATMA 2Z0OA 4DCNC 2EFKA 2Z0NA 2EFLA 1I49A 3ABHA 2FICA 3QWEA 3LLLA 2RAJA 4AKVA 2D4CA 1X04A 3DYTA 4I1QA 3SOGA 1I4DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H8S A;  3OK8 A;  2ELB A;  3CAZ A;  5C5B B;  3SYV A;  2X3V A;  2YKT A;  1I4T A;  2C08 A;  2RAK A;  2X3W A;  3QNI A;  3Q0K A;  3Q84 A;  4NQI A;  3HAI A;  4WPC A;  4AVM A;  4BNE A;  3I2W A;  2Z0V A;  2D1L A;  2RAI A;  1Y2O A;  4DYL A;  3HAJ A;  3G9G A;  1X03 A;  3HAH A;  3M3W A;  1URU A;  1WDZ A;  3ACO A;  4FZS A;  2X3X A;  2Q12 A;  1I4L A;  1ZWW A;  4NSW A;  2Q13 A;  4WPE A;  3QE6 A;  5C5B A;  3PLT A;  2V0O A;  4ATM A;  2Z0O A;  4DCN C;  2EFK A;  2Z0N A;  2EFL A;  1I49 A;  3ABH A;  2FIC A;  3QWE A;  3LLL A;  2RAJ A;  4AKV A;  2D4C A;  1X04 A;  3DYT A;  4I1Q A;  3SOG A;  1I4D A; 
#chains in the Genus database with same CATH topology
 2ELB A;  4R5J A;  3I04 A;  4AZG A;  2X3W A;  3HAI A;  1SU8 A;  2F7P A;  4KIK A;  4UDY X;  2D1L A;  3HAJ A;  2F7R A;  3QNJ A;  1TQV A;  4JN4 A;  1U00 A;  3L3O M;  3T4A G;  1PS3 A;  3DDF A;  4IWO A;  3D4Z A;  2YL5 A;  1I4T A;  2RAK A;  1QWU A;  4DYL A;  3D4Y A;  4JNE A;  4FZS A;  1ZWW A;  2QXL A;  1QWN A;  4E3C A;  3I39 X;  3KAW A;  3BUD A;  3CAZ A;  3OK8 A;  1OA0 A;  3L3P A;  2OW7 A;  3B52 X;  4JNF A;  2Z0V A;  4AZ7 A;  3A98 A;  2X3X A;  4JWC A;  1O7D C;  2Z0O A;  3O3O B;  1GNL A;  4UDX X;  4R5L A;  4JWE A;  3I2W A;  3ER8 C;  4FZP A;  3D51 A;  1Y2O A;  4HR1 B;  2JNS A;  1R34 A;  4FZO A;  1DKZ A;  5C5B A;  3QE6 A;  3ABH A;  4AZB A;  3D2E A;  3BVW A;  4EZO A;  3SYV A;  2X3V A;  4H6I A;  2C08 A;  3Q0K A;  3CVR A;  4AVM A;  4EZP A;  3DX0 A;  4G6Q A;  1WDZ A;  4AZH A;  2OO2 A;  4IM2 A;  4HY9 A;  3OWG A;  3PLT A;  1HWW A;  4EZN A;  3UIT A;  3EJP A;  3EJT A;  3ZED A;  3QWE A;  2F18 A;  3BUB A;  2YIV X;  4AZI A;  4E81 A;  3T49 A;  4JWD A;  2YKT A;  3QNI A;  4JWI A;  4EZS A;  3DPO A;  1E2U A;  2YLL A;  4NPH A;  3CV5 A;  2Q13 A;  4EZY A;  2EFK A;  2N3K A;  3CZN A;  1TQU A;  1MJG A;  1DKY A;  4IM3 A;  4JLC A;  2MI7 A;  3BLB A;  4EZW A;  3T48 A;  3CZS A;  2WYI A;  2OBM A;  3CKD A;  1UPX A;  3VEA A;  3G9G A;  1E9V A;  5FIG A;  3EJS A;  1GNT A;  3DX4 A;  3BUP A;  4EZQ A;  4JL9 A;  3EJR A;  1R5E A;  1TQW A;  4D8J A;  1OAO A;  3GI7 A;  4BNE A;  1OA1 A;  3VEB A;  3DX2 A;  3B53 X;  2OBL A;  3O3N B;  4AZ5 A;  4DCN C;  2Z0N A;  1HTY A;  4AZC A;  4B9Q A;  4EZU A;  2EX3 B;  3T46 A;  2F1B A;  3DPP A;  2WYH A;  2YL9 A;  2EWF A;  4M0M A;  2EFL A;  4KIK B;  2RT6 A;  4AKV A;  4EZX A;  4IWP A;  4I1Q A;  2GF4 A;  2QKW A;  3C7N A;  4EZR A;  4WPC A;  3D52 A;  2LXY A;  4R5K A;  4R5G A;  2YIA A;  3D50 A;  1DKX A;  2GAF D;  3BVU A;  4NSW A;  3BVX A;  3LVT A;  4EZV A;  2GA9 D;  2YL8 A;  3KDR A;  1SU6 A;  4EZT A;  3VKH A;  5KBP A;  2QFF A;  3QA8 A;  3OHX M;  4AZ6 A;  3HAH A;  1URU A;  2ZXQ A;  2WIN M;  3DX3 A;  4IWQ A;  3FD9 A;  4HYB A;  1I4D A;  2X5C A;  1E1D A;  2PMR A;  5E84 A;  4AZC B;  4R5I A;  1ZYL A;  4IW0 A;  1SUF A;  2OW6 A;  2Q12 A;  1QX1 A;  3O3M B;  1TQT A;  1TQS A;  2F7Q A;  5TKY A;  2FIC A;  3LLL A;  2PY6 A;  5C5B B;  2LM0 A;  3I01 A;  4F00 A;  3M3W A;  3T47 A;  4F01 A;  1W9M A;  2Z8Y A;  2V0O A;  2OZN B;  4ATM A;  1HXK A;  1GN9 A;  4H6H A;  1O7D B;  4EZZ A;  3DYT A;  1JQK A;  3ER9 B;  1LQ7 A;  3BUQ A;  1X03 A;  3DPQ A;  4PO2 A;  1I4L A;  1R33 A;  2ND1 A;  3F7W A;  3ERC C;  2YLA A;  3RV1 A;  2JNK A;  3SOG A;  3DX1 A;  3Q84 A;  1YWM A;  2YIB A;  3KAV A;  2NCZ A;  3D2F A;  3ACO A;  2F1A A;  2KHO A;  3B51 X;  2YL6 A;  2YI8 A;  1I49 A;  3RPM A;  3BUI A;  2RAJ A;  2FYV A;  2D4C A;  2ALW A;  1X04 A;  4H8S A;  2O0I 1;  3DDG A;  4NQI A;  2RAI A;  5FLE X;  3RV0 A;  2ND0 A;  4WPE A;  3BVV A;  3BVT A;  2YI9 A;  4IM0 A;  4FM3 A;  3EJU A;  4HR1 A;  1SU7 A;  3LMF A;  2F7O A;  3EJQ A; 
#chains in the Genus database with same CATH homology
 4H8S A;  3OK8 A;  2ELB A;  3CAZ A;  5C5B B;  3SYV A;  2X3V A;  2YKT A;  1I4T A;  2C08 A;  2RAK A;  2X3W A;  3QNI A;  3Q0K A;  3Q84 A;  4NQI A;  3HAI A;  4WPC A;  4AVM A;  4BNE A;  3I2W A;  2Z0V A;  2D1L A;  2RAI A;  1Y2O A;  4DYL A;  3HAJ A;  3G9G A;  1X03 A;  3HAH A;  3M3W A;  1URU A;  1WDZ A;  3ACO A;  4FZS A;  2X3X A;  2Q12 A;  1I4L A;  1ZWW A;  4NSW A;  2Q13 A;  4WPE A;  3QE6 A;  5C5B A;  3PLT A;  2V0O A;  4ATM A;  2Z0O A;  4DCN C;  2EFK A;  2Z0N A;  2EFL A;  1I49 A;  3ABH A;  2FIC A;  3QWE A;  3LLL A;  2RAJ A;  4AKV A;  2D4C A;  1X04 A;  3DYT A;  4I1Q A;  3SOG A;  1I4D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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