4BNEA

Pacsin2 interacts with membranes and actin-filaments
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
290
structure length
290
Chain Sequence
SDSFWEVGNYKRTVKRIDDGHRLCNDLMNCIHERARIEKVYAQQLTEWAKRWKQLVEKGPQYGTVERAWCAFMSEAEKVSELHLEVKGSLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHAACKEEKLAISRETNSKADPALNPEQLKKLQDKVERSKQDVLKTKAKYEKSLKELDNATPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKNIYRELEQNIKTADAVEDLRWFRANQGPGMSMNWPQFEDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
molecule keywords PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROT
publication title Direct Interaction of Actin Filaments with F-Bar Protein Pacsin2.
pubmed doi rcsb
source organism Gallus gallus
total genus 127
structure length 290
sequence length 290
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00018 SH3_1 SH3 domain
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4bneA01
4AVMA 1X03A 2Q13A 2RAJA 3DYTA 1I4TA 2V0OA 1URUA 3HAJA 5C5BA 3SYVA 2Q12A 4NSWA 3ACOA 3G9GA 2RAKA 2RAIA 3QNIA 5C5BB 3HAIA 2D1LA 3CAZA 4WPCA 2Z0OA 2EFKA 1Y2OA 2ELBA 2FICA 1ZWWA 3M3WA 2X3XA 3QWEA 4H8SA 3Q84A 3LLLA 3QE6A 3SOGA 1I49A 4ATMA 4AKVA 4BNEA 3OK8A 4DYLA 3I2WA 2Z0NA 4FZSA 4I1QA 4DCNC 4WPEA 2C08A 2EFLA 2YKTA 3Q0KA 3ABHA 1I4DA 2D4CA 2X3VA 2X3WA 2Z0VA 4NQIA 1I4LA 3HAHA 3PLTA 1WDZA 1X04A
chains in the Genus database with same CATH superfamily
3QA8A 5C5BA 4AZ5A 3Q84A 2EWFA 2OBMA 2GAFD 2YIBA 1PS3A 3T4AG 2C08A 3Q0KA 4H6IA 2X3VA 3LMFA 1X04A 3BVUA 3L3OM 4AZGA 2RAJA 3SYVA 3A98A 2Z0OA 1Y2OA 2ELBA 4AZCA 3OHXM 3C7NA 2WYIA 2YL9A 1DKZA 2X3WA 2ALWA 1W9MA 1GNLA 2Q12A 1OA1A 2N3KA 3EJRA 3DDGA 4IM3A 3B52X 1YWMA 3VKHA 2Z0VA 3ACOA 3KAWA 3I01A 2RT6A 4HR1B 4KIKA 1SUFA 3BUQA 2ND1A 3HAJA 2RAKA 3CKDA 3BUDA 2X3XA 4E3CA 3LLLA 2ND0A 2NCZA 2Z0NA 4AZCB 2YLLA 4UDYX 1TQSA 4HYBA 4JL9A 4R5GA 4EZVA 3DYTA 3T48A 1URUA 3QNIA 3CAZA 3D4YA 3M3WA 3EJSA 3SOGA 3DX3A 5TKYA 4JNFA 4JNEA 3OWGA 3D52A 4NQIA 1TQVA 4KIKB 5FIGA 4NSWA 4EZWA 3DX1A 2QFFA 2F7QA 2JNKA 1HTYA 4AKVA 3FD9A 4EZSA 3DPPA 2F1BA 2OW6A 2YL6A 3L3PA 4HR1A 3D4ZA 1MJGA 4R5LA 4IWPA 4EZZA 3I39X 4HY9A 1TQWA 3CZNA 1R33A 2RAIA 1GN9A 1TQUA 2LM0A 1ZWWA 2YIVX 3I2WA 4IWQA 2PMRA 3KAVA 3VEBA 2D4CA 4R5IA 4JWDA 2QKWA 1X03A 3EJPA 4JWEA 4EZRA 1QWNA 1JQKA 4EZUA 4EZQA 2FYVA 1E9VA 3ZEDA 1QWUA 4EZPA 1UPXA 2X5CA 4WPEA 1HWWA 4E81A 2WYHA 1I4DA 4AZ6A 3B51X 1TQTA 3EJTA 3KDRA 5E84A 2F1AA 1OA0A 4EZOA 3LVTA 2D1LA 4AZIA 3BVWA 1OAOA 3RPMA 1O7DC 3BUPA 4IW0A 2MI7A 3BUIA 2YL8A 2YL5A 1I4LA 4FZOA 4AVMA 4JWCA 4AZBA 3G9GA 4G6QA 2OBLA 4F01A 1U00A 3VEAA 3BVXA 2YLAA 3BVTA 1E1DA 3DX4A 3HAHA 1DKXA 3CZSA 3ER9B 3D51A 4PO2A 1SU7A 2V0OA 3DPOA 3EJUA 3DX0A 3DPQA 5KBPA 4IM2A 3O3NB 3CV5A 1SU6A 1I49A 4JWIA 2ZXQA 3OK8A 4NPHA 4AZ7A 1GNTA 3BUBA 4R5JA 4F00A 3BLBA 1I4TA 3GI7A 4EZTA 3UITA 4WPCA 3RV0A 4AZHA 2JNSA 4FZSA 4JN4A 2EX3B 1SU8A 2OZNB 4FM3A 2WINM 3DDFA 3PLTA 3I04A 3HAIA 4EZNA 4EZYA 3EJQA 4H8SA 3T47A 3BVVA 4M0MA 2PY6A 3O3MB 2EFLA 4JLCA 4BNEA 2GF4A 3O3OB 4H6HA 3CVRA 2KHOA 4IM0A 3B53X 2GA9D 4UDXX 5C5BB 3D2EA 4FZPA 2QXLA 3QE6A 1QX1A 4DYLA 2F7RA 4DCNC 3ABHA 5FLEX 1E2UA 2O0I1 2OO2A 1O7DB 1R34A 3ERCC 4R5KA 3DX2A 3RV1A 1DKYA 2EFKA 2F18A 2OW7A 3T49A 2YI9A 4ATMA 3QNJA 4B9QA 2YKTA 2YIAA 1WDZA 4D8JA 1HXKA 4IWOA 1ZYLA 2Q13A 2YI8A 2Z8YA 3D2FA 3T46A 2F7OA 3D50A 3ER8C 2FICA 3QWEA 1LQ7A 2F7PA 1R5EA 4I1QA 4EZXA 3F7WA 2LXYA
chains in the Genus database with same CATH topology
4AVMA 1X03A 2Q13A 2RAJA 3DYTA 1I4TA 2V0OA 1URUA 3HAJA 5C5BA 3SYVA 2Q12A 4NSWA 3ACOA 3G9GA 2RAKA 2RAIA 3QNIA 5C5BB 3HAIA 2D1LA 3CAZA 4WPCA 2Z0OA 2EFKA 1Y2OA 2ELBA 2FICA 1ZWWA 3M3WA 2X3XA 3QWEA 4H8SA 3Q84A 3LLLA 3QE6A 3SOGA 1I49A 4ATMA 4AKVA 4BNEA 3OK8A 4DYLA 3I2WA 2Z0NA 4FZSA 4I1QA 4DCNC 4WPEA 2C08A 2EFLA 2YKTA 3Q0KA 3ABHA 1I4DA 2D4CA 2X3VA 2X3WA 2Z0VA 4NQIA 1I4LA 3HAHA 3PLTA 1WDZA 1X04A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AVM A;  1X03 A;  2Q13 A;  2RAJ A;  3DYT A;  1I4T A;  2V0O A;  1URU A;  3HAJ A;  5C5B A;  3SYV A;  2Q12 A;  4NSW A;  3ACO A;  3G9G A;  2RAK A;  2RAI A;  3QNI A;  5C5B B;  3HAI A;  2D1L A;  3CAZ A;  4WPC A;  2Z0O A;  2EFK A;  1Y2O A;  2ELB A;  2FIC A;  1ZWW A;  3M3W A;  2X3X A;  3QWE A;  4H8S A;  3Q84 A;  3LLL A;  3QE6 A;  3SOG A;  1I49 A;  4ATM A;  4AKV A;  4BNE A;  3OK8 A;  4DYL A;  3I2W A;  2Z0N A;  4FZS A;  4I1Q A;  4DCN C;  4WPE A;  2C08 A;  2EFL A;  2YKT A;  3Q0K A;  3ABH A;  1I4D A;  2D4C A;  2X3V A;  2X3W A;  2Z0V A;  4NQI A;  1I4L A;  3HAH A;  3PLT A;  1WDZ A;  1X04 A; 
#chains in the Genus database with same CATH topology
 3QA8 A;  5C5B A;  4AZ5 A;  3Q84 A;  2EWF A;  2OBM A;  2GAF D;  2YIB A;  1PS3 A;  3T4A G;  2C08 A;  3Q0K A;  4H6I A;  2X3V A;  3LMF A;  1X04 A;  3BVU A;  3L3O M;  4AZG A;  2RAJ A;  3SYV A;  3A98 A;  2Z0O A;  1Y2O A;  2ELB A;  4AZC A;  3OHX M;  3C7N A;  2WYI A;  2YL9 A;  1DKZ A;  2X3W A;  2ALW A;  1W9M A;  1GNL A;  2Q12 A;  1OA1 A;  2N3K A;  3EJR A;  3DDG A;  4IM3 A;  3B52 X;  1YWM A;  3VKH A;  2Z0V A;  3ACO A;  3KAW A;  3I01 A;  2RT6 A;  4HR1 B;  4KIK A;  1SUF A;  3BUQ A;  2ND1 A;  3HAJ A;  2RAK A;  3CKD A;  3BUD A;  2X3X A;  4E3C A;  3LLL A;  2ND0 A;  2NCZ A;  2Z0N A;  4AZC B;  2YLL A;  4UDY X;  1TQS A;  4HYB A;  4JL9 A;  4R5G A;  4EZV A;  3DYT A;  3T48 A;  1URU A;  3QNI A;  3CAZ A;  3D4Y A;  3M3W A;  3EJS A;  3SOG A;  3DX3 A;  5TKY A;  4JNF A;  4JNE A;  3OWG A;  3D52 A;  4NQI A;  1TQV A;  4KIK B;  5FIG A;  4NSW A;  4EZW A;  3DX1 A;  2QFF A;  2F7Q A;  2JNK A;  1HTY A;  4AKV A;  3FD9 A;  4EZS A;  3DPP A;  2F1B A;  2OW6 A;  2YL6 A;  3L3P A;  4HR1 A;  3D4Z A;  1MJG A;  4R5L A;  4IWP A;  4EZZ A;  3I39 X;  4HY9 A;  1TQW A;  3CZN A;  1R33 A;  2RAI A;  1GN9 A;  1TQU A;  2LM0 A;  1ZWW A;  2YIV X;  3I2W A;  4IWQ A;  2PMR A;  3KAV A;  3VEB A;  2D4C A;  4R5I A;  4JWD A;  2QKW A;  1X03 A;  3EJP A;  4JWE A;  4EZR A;  1QWN A;  1JQK A;  4EZU A;  4EZQ A;  2FYV A;  1E9V A;  3ZED A;  1QWU A;  4EZP A;  1UPX A;  2X5C A;  4WPE A;  1HWW A;  4E81 A;  2WYH A;  1I4D A;  4AZ6 A;  3B51 X;  1TQT A;  3EJT A;  3KDR A;  5E84 A;  2F1A A;  1OA0 A;  4EZO A;  3LVT A;  2D1L A;  4AZI A;  3BVW A;  1OAO A;  3RPM A;  1O7D C;  3BUP A;  4IW0 A;  2MI7 A;  3BUI A;  2YL8 A;  2YL5 A;  1I4L A;  4FZO A;  4AVM A;  4JWC A;  4AZB A;  3G9G A;  4G6Q A;  2OBL A;  4F01 A;  1U00 A;  3VEA A;  3BVX A;  2YLA A;  3BVT A;  1E1D A;  3DX4 A;  3HAH A;  1DKX A;  3CZS A;  3ER9 B;  3D51 A;  4PO2 A;  1SU7 A;  2V0O A;  3DPO A;  3EJU A;  3DX0 A;  3DPQ A;  5KBP A;  4IM2 A;  3O3N B;  3CV5 A;  1SU6 A;  1I49 A;  4JWI A;  2ZXQ A;  3OK8 A;  4NPH A;  4AZ7 A;  1GNT A;  3BUB A;  4R5J A;  4F00 A;  3BLB A;  1I4T A;  3GI7 A;  4EZT A;  3UIT A;  4WPC A;  3RV0 A;  4AZH A;  2JNS A;  4FZS A;  4JN4 A;  2EX3 B;  1SU8 A;  2OZN B;  4FM3 A;  2WIN M;  3DDF A;  3PLT A;  3I04 A;  3HAI A;  4EZN A;  4EZY A;  3EJQ A;  4H8S A;  3T47 A;  3BVV A;  4M0M A;  2PY6 A;  3O3M B;  2EFL A;  4JLC A;  4BNE A;  2GF4 A;  3O3O B;  4H6H A;  3CVR A;  2KHO A;  4IM0 A;  3B53 X;  2GA9 D;  4UDX X;  5C5B B;  3D2E A;  4FZP A;  2QXL A;  3QE6 A;  1QX1 A;  4DYL A;  2F7R A;  4DCN C;  3ABH A;  5FLE X;  1E2U A;  2O0I 1;  2OO2 A;  1O7D B;  1R34 A;  3ERC C;  4R5K A;  3DX2 A;  3RV1 A;  1DKY A;  2EFK A;  2F18 A;  2OW7 A;  3T49 A;  2YI9 A;  4ATM A;  3QNJ A;  4B9Q A;  2YKT A;  2YIA A;  1WDZ A;  4D8J A;  1HXK A;  4IWO A;  1ZYL A;  2Q13 A;  2YI8 A;  2Z8Y A;  3D2F A;  3T46 A;  2F7O A;  3D50 A;  3ER8 C;  2FIC A;  3QWE A;  1LQ7 A;  2F7P A;  1R5E A;  4I1Q A;  4EZX A;  3F7W A;  2LXY A; 
#chains in the Genus database with same CATH homology
 4AVM A;  1X03 A;  2Q13 A;  2RAJ A;  3DYT A;  1I4T A;  2V0O A;  1URU A;  3HAJ A;  5C5B A;  3SYV A;  2Q12 A;  4NSW A;  3ACO A;  3G9G A;  2RAK A;  2RAI A;  3QNI A;  5C5B B;  3HAI A;  2D1L A;  3CAZ A;  4WPC A;  2Z0O A;  2EFK A;  1Y2O A;  2ELB A;  2FIC A;  1ZWW A;  3M3W A;  2X3X A;  3QWE A;  4H8S A;  3Q84 A;  3LLL A;  3QE6 A;  3SOG A;  1I49 A;  4ATM A;  4AKV A;  4BNE A;  3OK8 A;  4DYL A;  3I2W A;  2Z0N A;  4FZS A;  4I1Q A;  4DCN C;  4WPE A;  2C08 A;  2EFL A;  2YKT A;  3Q0K A;  3ABH A;  1I4D A;  2D4C A;  2X3V A;  2X3W A;  2Z0V A;  4NQI A;  1I4L A;  3HAH A;  3PLT A;  1WDZ A;  1X04 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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