4BQTA

Aplysia californica achbp in complex with cytisine
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
206
structure length
206
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Receptor
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Structural Characterization of Binding Mode of Smoking Cessation Drugs to Nicotinic Acetylcholine Receptors Through Study of Ligand Complexes with Acetylcholine-Binding Protein.
pubmed doi rcsb
source organism Aplysia californica
total genus 48
structure length 206
sequence length 206
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2013-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4bqtA00
4HQPA 3WTNA 2PH9A 3WTOA 4AFHA 4DBMA 4COFA 5IUXA 3EAMA 2X00D 4ALXA 5HCMA 4HFBA 4A97A 5HCJA 2BYRA 2WNJA 4HFIA 3RHWA 4EZ1A 2Y7YA 5J5GA 2XYSA 3C84A 4ILAA 4XHEA 2BG9C 2BR7A 2YMDA 3GUAA 5HEJA 3TLVA 3TLSA 4UM3A 2BYNA 4ILCA 3P4WA 3ZDGA 2XYTA 3JADA 4ZJSA 5KZUA 3EI0A 1UW6A 4ILBA 4PIRA 4QACA 5HEOA 3SH1A 3UU4A 5FJVA 3UU5A 5AFNA 2XNUA 4QH1A 4ZZBA 5L4HA 4UXUA 3PEOA 4TNVA 2WN9A 3UU8A 5HEGA 4LMKA 2BR8A 5CFBA 5HEHA 1I9BA 3WTJA 5LG3A 2WNLA 3EHZA 3RQWA 3WIPA 5J0ZA 2BYQA 3U8LA 4LMJA 5AFKA 4A98A 4AFGA 3RQUA 3TLUA 3TLWA 3U8NA 3UU3A 4ZK4A 2BYSA 3P50A 4QH5A 4ZJTA 4UM1A 4ZR6A 4AFTA 5AINA 2X00A 3ZKRA 2BG9E 4NZBA 2XQ6A 2XQ5A 5SYOA 2XQ9A 3UQ7A 4FRRA 2VL0A 2XNTA 2YKSA 2BJ0A 2BG9B 3SIOA 5J5FA 5L47A 4ZRUA 5AFMB 3WTIA 3IGQA 3LSVA 2Y56A 4TWDA 2C9TA 2Y58A 3RIAA 5L4EA 2XQ4A 5TVCA 3U8MA 5J5HA 2XQ3A 4IL9A 5KE4A 5J5IA 2ZJUA 3SQ6A 2QC1B 5AFJA 2Y54A 4IL4A 3WTMA 4TNWA 2XQAA 3JAEA 5BW2A 2ZJVA 2PGZA 4LMLA 1UX2A 5BRXA 2YMEA 4UM3S 3C79A 3PMZA 4QH4A 3TLTA 2XQ8A 2WNCA 3UUBA 4NPPA 4B5DA 2XZ5A 5JMEA 3WTHA 4F8HA 2YOEA 5LXBA 2XNVA 4UM3P 3JAFA 2BG9A 4HFCA 1UV6A 4UY2A 5AFMA 4X5TA 2YN6A 4WV9A 2XZ6A 2W8GA 4IREA 3U8JA 4HFDA 3RIFA 3UU6A 4Z90A 2UZ6A 4QABA 3UQ4A 4XK9A 5CO5A 4TWHA 4BFQA 3U8KA 2Y57A 4ZZCA 3T4MA 3WTKA 3ZDHA 2BYPA 4TWFA 3SQ9A 4Z91A 4QAAA 4HFEA 2WZYA 3RI5A 4BQTA 2W8FA 4ZK1A 5BP0A 2XQ7A 5AFLA 5AFHA 4HFHA 5HEUA 4D01A 3WTLA
chains in the Genus database with same CATH superfamily
4HQPA 3WTNA 2PH9A 3WTOA 4AFHA 4DBMA 4COFA 5IUXA 3EAMA 2X00D 4ALXA 5HCMA 4HFBA 4A97A 5HCJA 2BYRA 2WNJA 4HFIA 3RHWA 4EZ1A 2Y7YA 5J5GA 2XYSA 3C84A 4ILAA 4XHEA 2BG9C 2BR7A 2YMDA 3GUAA 5HEJA 3TLVA 3TLSA 4UM3A 2BYNA 4ILCA 3P4WA 3ZDGA 2XYTA 3JADA 4ZJSA 5KZUA 3EI0A 1UW6A 4ILBA 4PIRA 4QACA 5HEOA 3SH1A 3UU4A 5FJVA 3UU5A 5AFNA 2XNUA 4QH1A 4ZZBA 5L4HA 4UXUA 3PEOA 4TNVA 2WN9A 3UU8A 5HEGA 4LMKA 2BR8A 5CFBA 5HEHA 1I9BA 3WTJA 5LG3A 2WNLA 3EHZA 3RQWA 3WIPA 5J0ZA 2BYQA 3U8LA 4LMJA 5AFKA 4A98A 4AFGA 3RQUA 3TLUA 3TLWA 3U8NA 3UU3A 4ZK4A 2BYSA 3P50A 4QH5A 4ZJTA 4UM1A 4ZR6A 4AFTA 5AINA 2X00A 3ZKRA 2BG9E 4NZBA 2XQ6A 2XQ5A 5SYOA 2XQ9A 3UQ7A 4FRRA 2VL0A 2XNTA 2YKSA 2BJ0A 2BG9B 3SIOA 5J5FA 5L47A 4ZRUA 5AFMB 3WTIA 3IGQA 3LSVA 2Y56A 4TWDA 2C9TA 2Y58A 3RIAA 5L4EA 2XQ4A 5TVCA 3U8MA 5J5HA 2XQ3A 4IL9A 5KE4A 5J5IA 2ZJUA 3SQ6A 2QC1B 5AFJA 2Y54A 4IL4A 3WTMA 4TNWA 2XQAA 3JAEA 5BW2A 2ZJVA 2PGZA 4LMLA 1UX2A 5BRXA 2YMEA 4UM3S 3C79A 3PMZA 4QH4A 3TLTA 2XQ8A 2WNCA 3UUBA 4NPPA 4B5DA 2XZ5A 5JMEA 3WTHA 4F8HA 2YOEA 5LXBA 2XNVA 4UM3P 3JAFA 2BG9A 4HFCA 1UV6A 4UY2A 5AFMA 4X5TA 2YN6A 4WV9A 2XZ6A 2W8GA 4IREA 3U8JA 4HFDA 3RIFA 3UU6A 4Z90A 2UZ6A 4QABA 3UQ4A 4XK9A 5CO5A 4TWHA 4BFQA 3U8KA 2Y57A 4ZZCA 3T4MA 3WTKA 3ZDHA 2BYPA 4TWFA 3SQ9A 4Z91A 4QAAA 4HFEA 2WZYA 3RI5A 4BQTA 2W8FA 4ZK1A 5BP0A 2XQ7A 5AFLA 5AFHA 4HFHA 5HEUA 4D01A 3WTLA
chains in the Genus database with same CATH topology
4HQPA 3WTNA 2PH9A 3WTOA 4AFHA 4DBMA 4COFA 5IUXA 3EAMA 2X00D 4ALXA 5HCMA 4HFBA 4A97A 5HCJA 2BYRA 2WNJA 4HFIA 3RHWA 4EZ1A 2Y7YA 5J5GA 2XYSA 3C84A 4ILAA 4XHEA 2BG9C 2BR7A 2YMDA 3GUAA 5HEJA 3TLVA 3TLSA 4UM3A 2BYNA 4ILCA 3P4WA 3ZDGA 2XYTA 3JADA 4ZJSA 5KZUA 3EI0A 1UW6A 4ILBA 4PIRA 4QACA 5HEOA 3SH1A 3UU4A 5FJVA 3UU5A 5AFNA 2XNUA 4QH1A 4ZZBA 5L4HA 4UXUA 3PEOA 4TNVA 2WN9A 3UU8A 5HEGA 4LMKA 2BR8A 5CFBA 5HEHA 1I9BA 3WTJA 5LG3A 2WNLA 3EHZA 3RQWA 3WIPA 5J0ZA 2BYQA 3U8LA 4LMJA 5AFKA 4A98A 4AFGA 3RQUA 3TLUA 3TLWA 3U8NA 3UU3A 4ZK4A 2BYSA 3P50A 4QH5A 4ZJTA 4UM1A 4ZR6A 4AFTA 5AINA 2X00A 3ZKRA 2BG9E 4NZBA 2XQ6A 2XQ5A 5SYOA 2XQ9A 3UQ7A 4FRRA 2VL0A 2XNTA 2YKSA 2BJ0A 2BG9B 3SIOA 5J5FA 5L47A 4ZRUA 5AFMB 3WTIA 3IGQA 3LSVA 2Y56A 4TWDA 2C9TA 2Y58A 3RIAA 5L4EA 2XQ4A 5TVCA 3U8MA 5J5HA 2XQ3A 4IL9A 5KE4A 5J5IA 2ZJUA 3SQ6A 2QC1B 5AFJA 2Y54A 4IL4A 3WTMA 4TNWA 2XQAA 3JAEA 5BW2A 2ZJVA 2PGZA 4LMLA 1UX2A 5BRXA 2YMEA 4UM3S 3C79A 3PMZA 4QH4A 3TLTA 2XQ8A 2WNCA 3UUBA 4NPPA 4B5DA 2XZ5A 5JMEA 3WTHA 4F8HA 2YOEA 5LXBA 2XNVA 4UM3P 3JAFA 2BG9A 4HFCA 1UV6A 4UY2A 5AFMA 4X5TA 2YN6A 4WV9A 2XZ6A 2W8GA 4IREA 3U8JA 4HFDA 3RIFA 3UU6A 4Z90A 2UZ6A 4QABA 3UQ4A 4XK9A 5CO5A 4TWHA 4BFQA 3U8KA 2Y57A 4ZZCA 3T4MA 3WTKA 3ZDHA 2BYPA 4TWFA 3SQ9A 4Z91A 4QAAA 4HFEA 2WZYA 3RI5A 4BQTA 2W8FA 4ZK1A 5BP0A 2XQ7A 5AFLA 5AFHA 4HFHA 5HEUA 4D01A 3WTLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HQP A;  3WTN A;  2PH9 A;  3WTO A;  4AFH A;  4DBM A;  4COF A;  5IUX A;  3EAM A;  2X00 D;  4ALX A;  5HCM A;  4HFB A;  4A97 A;  5HCJ A;  2BYR A;  2WNJ A;  4HFI A;  3RHW A;  4EZ1 A;  2Y7Y A;  5J5G A;  2XYS A;  3C84 A;  4ILA A;  4XHE A;  2BG9 C;  2BR7 A;  2YMD A;  3GUA A;  5HEJ A;  3TLV A;  3TLS A;  4UM3 A;  2BYN A;  4ILC A;  3P4W A;  3ZDG A;  2XYT A;  3JAD A;  4ZJS A;  5KZU A;  3EI0 A;  1UW6 A;  4ILB A;  4PIR A;  4QAC A;  5HEO A;  3SH1 A;  3UU4 A;  5FJV A;  3UU5 A;  5AFN A;  2XNU A;  4QH1 A;  4ZZB A;  5L4H A;  4UXU A;  3PEO A;  4TNV A;  2WN9 A;  3UU8 A;  5HEG A;  4LMK A;  2BR8 A;  5CFB A;  5HEH A;  1I9B A;  3WTJ A;  5LG3 A;  2WNL A;  3EHZ A;  3RQW A;  3WIP A;  5J0Z A;  2BYQ A;  3U8L A;  4LMJ A;  5AFK A;  4A98 A;  4AFG A;  3RQU A;  3TLU A;  3TLW A;  3U8N A;  3UU3 A;  4ZK4 A;  2BYS A;  3P50 A;  4QH5 A;  4ZJT A;  4UM1 A;  4ZR6 A;  4AFT A;  5AIN A;  2X00 A;  3ZKR A;  2BG9 E;  4NZB A;  2XQ6 A;  2XQ5 A;  5SYO A;  2XQ9 A;  3UQ7 A;  4FRR A;  2VL0 A;  2XNT A;  2YKS A;  2BJ0 A;  2BG9 B;  3SIO A;  5J5F A;  5L47 A;  4ZRU A;  5AFM B;  3WTI A;  3IGQ A;  3LSV A;  2Y56 A;  4TWD A;  2C9T A;  2Y58 A;  3RIA A;  5L4E A;  2XQ4 A;  5TVC A;  3U8M A;  5J5H A;  2XQ3 A;  4IL9 A;  5KE4 A;  5J5I A;  2ZJU A;  3SQ6 A;  2QC1 B;  5AFJ A;  2Y54 A;  4IL4 A;  3WTM A;  4TNW A;  2XQA A;  3JAE A;  5BW2 A;  2ZJV A;  2PGZ A;  4LML A;  1UX2 A;  5BRX A;  2YME A;  4UM3 S;  3C79 A;  3PMZ A;  4QH4 A;  3TLT A;  2XQ8 A;  2WNC A;  3UUB A;  4NPP A;  4B5D A;  2XZ5 A;  5JME A;  3WTH A;  4F8H A;  2YOE A;  5LXB A;  2XNV A;  4UM3 P;  3JAF A;  2BG9 A;  4HFC A;  1UV6 A;  4UY2 A;  5AFM A;  4X5T A;  2YN6 A;  4WV9 A;  2XZ6 A;  2W8G A;  4IRE A;  3U8J A;  4HFD A;  3RIF A;  3UU6 A;  4Z90 A;  2UZ6 A;  4QAB A;  3UQ4 A;  4XK9 A;  5CO5 A;  4TWH A;  4BFQ A;  3U8K A;  2Y57 A;  4ZZC A;  3T4M A;  3WTK A;  3ZDH A;  2BYP A;  4TWF A;  3SQ9 A;  4Z91 A;  4QAA A;  4HFE A;  2WZY A;  3RI5 A;  4BQT A;  2W8F A;  4ZK1 A;  5BP0 A;  2XQ7 A;  5AFL A;  5AFH A;  4HFH A;  5HEU A;  4D01 A;  3WTL A; 
#chains in the Genus database with same CATH topology
 4HQP A;  3WTN A;  2PH9 A;  3WTO A;  4AFH A;  4DBM A;  4COF A;  5IUX A;  3EAM A;  2X00 D;  4ALX A;  5HCM A;  4HFB A;  4A97 A;  5HCJ A;  2BYR A;  2WNJ A;  4HFI A;  3RHW A;  4EZ1 A;  2Y7Y A;  5J5G A;  2XYS A;  3C84 A;  4ILA A;  4XHE A;  2BG9 C;  2BR7 A;  2YMD A;  3GUA A;  5HEJ A;  3TLV A;  3TLS A;  4UM3 A;  2BYN A;  4ILC A;  3P4W A;  3ZDG A;  2XYT A;  3JAD A;  4ZJS A;  5KZU A;  3EI0 A;  1UW6 A;  4ILB A;  4PIR A;  4QAC A;  5HEO A;  3SH1 A;  3UU4 A;  5FJV A;  3UU5 A;  5AFN A;  2XNU A;  4QH1 A;  4ZZB A;  5L4H A;  4UXU A;  3PEO A;  4TNV A;  2WN9 A;  3UU8 A;  5HEG A;  4LMK A;  2BR8 A;  5CFB A;  5HEH A;  1I9B A;  3WTJ A;  5LG3 A;  2WNL A;  3EHZ A;  3RQW A;  3WIP A;  5J0Z A;  2BYQ A;  3U8L A;  4LMJ A;  5AFK A;  4A98 A;  4AFG A;  3RQU A;  3TLU A;  3TLW A;  3U8N A;  3UU3 A;  4ZK4 A;  2BYS A;  3P50 A;  4QH5 A;  4ZJT A;  4UM1 A;  4ZR6 A;  4AFT A;  5AIN A;  2X00 A;  3ZKR A;  2BG9 E;  4NZB A;  2XQ6 A;  2XQ5 A;  5SYO A;  2XQ9 A;  3UQ7 A;  4FRR A;  2VL0 A;  2XNT A;  2YKS A;  2BJ0 A;  2BG9 B;  3SIO A;  5J5F A;  5L47 A;  4ZRU A;  5AFM B;  3WTI A;  3IGQ A;  3LSV A;  2Y56 A;  4TWD A;  2C9T A;  2Y58 A;  3RIA A;  5L4E A;  2XQ4 A;  5TVC A;  3U8M A;  5J5H A;  2XQ3 A;  4IL9 A;  5KE4 A;  5J5I A;  2ZJU A;  3SQ6 A;  2QC1 B;  5AFJ A;  2Y54 A;  4IL4 A;  3WTM A;  4TNW A;  2XQA A;  3JAE A;  5BW2 A;  2ZJV A;  2PGZ A;  4LML A;  1UX2 A;  5BRX A;  2YME A;  4UM3 S;  3C79 A;  3PMZ A;  4QH4 A;  3TLT A;  2XQ8 A;  2WNC A;  3UUB A;  4NPP A;  4B5D A;  2XZ5 A;  5JME A;  3WTH A;  4F8H A;  2YOE A;  5LXB A;  2XNV A;  4UM3 P;  3JAF A;  2BG9 A;  4HFC A;  1UV6 A;  4UY2 A;  5AFM A;  4X5T A;  2YN6 A;  4WV9 A;  2XZ6 A;  2W8G A;  4IRE A;  3U8J A;  4HFD A;  3RIF A;  3UU6 A;  4Z90 A;  2UZ6 A;  4QAB A;  3UQ4 A;  4XK9 A;  5CO5 A;  4TWH A;  4BFQ A;  3U8K A;  2Y57 A;  4ZZC A;  3T4M A;  3WTK A;  3ZDH A;  2BYP A;  4TWF A;  3SQ9 A;  4Z91 A;  4QAA A;  4HFE A;  2WZY A;  3RI5 A;  4BQT A;  2W8F A;  4ZK1 A;  5BP0 A;  2XQ7 A;  5AFL A;  5AFH A;  4HFH A;  5HEU A;  4D01 A;  3WTL A; 
#chains in the Genus database with same CATH homology
 4HQP A;  3WTN A;  2PH9 A;  3WTO A;  4AFH A;  4DBM A;  4COF A;  5IUX A;  3EAM A;  2X00 D;  4ALX A;  5HCM A;  4HFB A;  4A97 A;  5HCJ A;  2BYR A;  2WNJ A;  4HFI A;  3RHW A;  4EZ1 A;  2Y7Y A;  5J5G A;  2XYS A;  3C84 A;  4ILA A;  4XHE A;  2BG9 C;  2BR7 A;  2YMD A;  3GUA A;  5HEJ A;  3TLV A;  3TLS A;  4UM3 A;  2BYN A;  4ILC A;  3P4W A;  3ZDG A;  2XYT A;  3JAD A;  4ZJS A;  5KZU A;  3EI0 A;  1UW6 A;  4ILB A;  4PIR A;  4QAC A;  5HEO A;  3SH1 A;  3UU4 A;  5FJV A;  3UU5 A;  5AFN A;  2XNU A;  4QH1 A;  4ZZB A;  5L4H A;  4UXU A;  3PEO A;  4TNV A;  2WN9 A;  3UU8 A;  5HEG A;  4LMK A;  2BR8 A;  5CFB A;  5HEH A;  1I9B A;  3WTJ A;  5LG3 A;  2WNL A;  3EHZ A;  3RQW A;  3WIP A;  5J0Z A;  2BYQ A;  3U8L A;  4LMJ A;  5AFK A;  4A98 A;  4AFG A;  3RQU A;  3TLU A;  3TLW A;  3U8N A;  3UU3 A;  4ZK4 A;  2BYS A;  3P50 A;  4QH5 A;  4ZJT A;  4UM1 A;  4ZR6 A;  4AFT A;  5AIN A;  2X00 A;  3ZKR A;  2BG9 E;  4NZB A;  2XQ6 A;  2XQ5 A;  5SYO A;  2XQ9 A;  3UQ7 A;  4FRR A;  2VL0 A;  2XNT A;  2YKS A;  2BJ0 A;  2BG9 B;  3SIO A;  5J5F A;  5L47 A;  4ZRU A;  5AFM B;  3WTI A;  3IGQ A;  3LSV A;  2Y56 A;  4TWD A;  2C9T A;  2Y58 A;  3RIA A;  5L4E A;  2XQ4 A;  5TVC A;  3U8M A;  5J5H A;  2XQ3 A;  4IL9 A;  5KE4 A;  5J5I A;  2ZJU A;  3SQ6 A;  2QC1 B;  5AFJ A;  2Y54 A;  4IL4 A;  3WTM A;  4TNW A;  2XQA A;  3JAE A;  5BW2 A;  2ZJV A;  2PGZ A;  4LML A;  1UX2 A;  5BRX A;  2YME A;  4UM3 S;  3C79 A;  3PMZ A;  4QH4 A;  3TLT A;  2XQ8 A;  2WNC A;  3UUB A;  4NPP A;  4B5D A;  2XZ5 A;  5JME A;  3WTH A;  4F8H A;  2YOE A;  5LXB A;  2XNV A;  4UM3 P;  3JAF A;  2BG9 A;  4HFC A;  1UV6 A;  4UY2 A;  5AFM A;  4X5T A;  2YN6 A;  4WV9 A;  2XZ6 A;  2W8G A;  4IRE A;  3U8J A;  4HFD A;  3RIF A;  3UU6 A;  4Z90 A;  2UZ6 A;  4QAB A;  3UQ4 A;  4XK9 A;  5CO5 A;  4TWH A;  4BFQ A;  3U8K A;  2Y57 A;  4ZZC A;  3T4M A;  3WTK A;  3ZDH A;  2BYP A;  4TWF A;  3SQ9 A;  4Z91 A;  4QAA A;  4HFE A;  2WZY A;  3RI5 A;  4BQT A;  2W8F A;  4ZK1 A;  5BP0 A;  2XQ7 A;  5AFL A;  5AFH A;  4HFH A;  5HEU A;  4D01 A;  3WTL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...