4C4DA

Covalent glycosyl-enzyme intermediate of hypocrea jecorina cel7a e217q mutant trapped using dnp-2-deoxy-2-fluoro-cellotrioside
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
434
structure length
434
Chain Sequence
ESACTLQSETHPPLTWQKCSSGGTCTQQTGSVVIDANWRWTHATNSSTNCYDGNTWSSTLCPDNETCAKNCCLDGAAYASTYGVTTSGNSLSIDFVTQSAQKNVGARLYLMASDTTYQEFTLLGNEFSFDVDVSQLPCGLNGALYFVSMDADGGVSKYPTNTAGAKYGTGYCDSQCPRDLKFINGQANVEGWEPSSNNANTGIGGHGSCCSEMDIWQANSISEALTPHPCTTVGQEICEGDGCGGTYSDNRYGGTCDPDGCDWNPYRLGNTSFYGPGSSFTLDTTKKLTVVTQFETSGAINRYYVQNGVTFQQPNAELGSYSGNELNDDYCTAEEAEFGGSSFSDKGGLTQFKKATSGGMVLVMSLWDDYYANMLWLDSTYPTNETSSTPGAVRGSCSTSSGVPAQVESQSPNAKVTFSNIKFGPIGSTGNPSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords CELLULOSE 1,4-BETA-CELLOBIOSIDASE
publication title The Mechanism of Cellulose Hydrolysis by a Two-Step, Retaining Cellobiohydrolase Elucidated by Structural and Transition Path Sampling Studies.
pubmed doi rcsb
source organism Trichoderma reesei
total genus 134
structure length 434
sequence length 434
ec nomenclature ec 3.2.1.91: Cellulose 1,4-beta-cellobiosidase (non-reducing end).
pdb deposition date 2013-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00840 Glyco_hydro_7 Glycosyl hydrolase family 7
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.100.10 Mainly Beta Distorted Sandwich 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A Glycoside hydrolase, family 7, domain 4c4dA00
1EG1A 3PFZA 1A39A 1Z3WA 1Q9HA 2Y9NA 2A39A 2RFYA 1DYMA 4ZZVA 1OJIA 6CELA 1EGNA 1Z3VA 2V3RA 3OVWA 4D5OA 1CELA 7CELA 4ZZUA 4C4CA 2YOKA 4ZZPA 4D5PA 1H46X 1Q2BA 2YG1A 4ZZWA 1GPIA 4D5IA 2OVWA 4P1JA 2RFWA 4V20A 2RFZA 2XSPA 4HAQA 3PFXA 4V0ZA 4IPMA 1Z3TA 1OJJA 2CELA 5AMPA 4ZZTA 4HAPA 1DY4A 4OVWA 4V1ZA 4D5VA 4CELA 4CSIA 2RG0A 4C4DA 1OJKA 4XNNA 4ZZQA 2V3IA 4GWAA 4D5JA 4D5QA 4XEBA 3CELA 3PFJA 5CELA 1OVWA 4P1HA 1Q2EA 4UWTA 3PL3A
chains in the Genus database with same CATH superfamily
1EG1A 3PFZA 1A39A 1Z3WA 1Q9HA 2Y9NA 2A39A 2RFYA 1DYMA 4ZZVA 1OJIA 6CELA 1EGNA 1Z3VA 2V3RA 3OVWA 4D5OA 1CELA 7CELA 4ZZUA 4C4CA 2YOKA 4ZZPA 4D5PA 1H46X 1Q2BA 2YG1A 4ZZWA 1GPIA 4D5IA 2OVWA 4P1JA 2RFWA 4V20A 2RFZA 2XSPA 4HAQA 3PFXA 4V0ZA 4IPMA 1Z3TA 1OJJA 2CELA 5AMPA 4ZZTA 4HAPA 1DY4A 4OVWA 4V1ZA 4D5VA 4CELA 4CSIA 2RG0A 4C4DA 1OJKA 4XNNA 4ZZQA 2V3IA 4GWAA 4D5JA 4D5QA 4XEBA 3CELA 3PFJA 5CELA 1OVWA 4P1HA 1Q2EA 4UWTA 3PL3A
chains in the Genus database with same CATH topology
1EG1A 3PFZA 1A39A 1Z3WA 1Q9HA 2Y9NA 2A39A 2RFYA 1DYMA 4ZZVA 1OJIA 6CELA 1EGNA 1Z3VA 2V3RA 3OVWA 4D5OA 1CELA 7CELA 4ZZUA 4C4CA 2YOKA 4ZZPA 4D5PA 1H46X 1Q2BA 2YG1A 4ZZWA 1GPIA 4D5IA 2OVWA 4P1JA 2RFWA 4V20A 2RFZA 2XSPA 4HAQA 3PFXA 4V0ZA 4IPMA 1Z3TA 1OJJA 2CELA 5AMPA 4ZZTA 4HAPA 1DY4A 4OVWA 4V1ZA 4D5VA 4CELA 4CSIA 2RG0A 4C4DA 1OJKA 4XNNA 4ZZQA 2V3IA 4GWAA 4D5JA 4D5QA 4XEBA 3CELA 3PFJA 5CELA 1OVWA 4P1HA 1Q2EA 4UWTA 3PL3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EG1 A;  3PFZ A;  1A39 A;  1Z3W A;  1Q9H A;  2Y9N A;  2A39 A;  2RFY A;  1DYM A;  4ZZV A;  1OJI A;  6CEL A;  1EGN A;  1Z3V A;  2V3R A;  3OVW A;  4D5O A;  1CEL A;  7CEL A;  4ZZU A;  4C4C A;  2YOK A;  4ZZP A;  4D5P A;  1H46 X;  1Q2B A;  2YG1 A;  4ZZW A;  1GPI A;  4D5I A;  2OVW A;  4P1J A;  2RFW A;  4V20 A;  2RFZ A;  2XSP A;  4HAQ A;  3PFX A;  4V0Z A;  4IPM A;  1Z3T A;  1OJJ A;  2CEL A;  5AMP A;  4ZZT A;  4HAP A;  1DY4 A;  4OVW A;  4V1Z A;  4D5V A;  4CEL A;  4CSI A;  2RG0 A;  4C4D A;  1OJK A;  4XNN A;  4ZZQ A;  2V3I A;  4GWA A;  4D5J A;  4D5Q A;  4XEB A;  3CEL A;  3PFJ A;  5CEL A;  1OVW A;  4P1H A;  1Q2E A;  4UWT A;  3PL3 A; 
#chains in the Genus database with same CATH topology
 1EG1 A;  3PFZ A;  1A39 A;  1Z3W A;  1Q9H A;  2Y9N A;  2A39 A;  2RFY A;  1DYM A;  4ZZV A;  1OJI A;  6CEL A;  1EGN A;  1Z3V A;  2V3R A;  3OVW A;  4D5O A;  1CEL A;  7CEL A;  4ZZU A;  4C4C A;  2YOK A;  4ZZP A;  4D5P A;  1H46 X;  1Q2B A;  2YG1 A;  4ZZW A;  1GPI A;  4D5I A;  2OVW A;  4P1J A;  2RFW A;  4V20 A;  2RFZ A;  2XSP A;  4HAQ A;  3PFX A;  4V0Z A;  4IPM A;  1Z3T A;  1OJJ A;  2CEL A;  5AMP A;  4ZZT A;  4HAP A;  1DY4 A;  4OVW A;  4V1Z A;  4D5V A;  4CEL A;  4CSI A;  2RG0 A;  4C4D A;  1OJK A;  4XNN A;  4ZZQ A;  2V3I A;  4GWA A;  4D5J A;  4D5Q A;  4XEB A;  3CEL A;  3PFJ A;  5CEL A;  1OVW A;  4P1H A;  1Q2E A;  4UWT A;  3PL3 A; 
#chains in the Genus database with same CATH homology
 1EG1 A;  3PFZ A;  1A39 A;  1Z3W A;  1Q9H A;  2Y9N A;  2A39 A;  2RFY A;  1DYM A;  4ZZV A;  1OJI A;  6CEL A;  1EGN A;  1Z3V A;  2V3R A;  3OVW A;  4D5O A;  1CEL A;  7CEL A;  4ZZU A;  4C4C A;  2YOK A;  4ZZP A;  4D5P A;  1H46 X;  1Q2B A;  2YG1 A;  4ZZW A;  1GPI A;  4D5I A;  2OVW A;  4P1J A;  2RFW A;  4V20 A;  2RFZ A;  2XSP A;  4HAQ A;  3PFX A;  4V0Z A;  4IPM A;  1Z3T A;  1OJJ A;  2CEL A;  5AMP A;  4ZZT A;  4HAP A;  1DY4 A;  4OVW A;  4V1Z A;  4D5V A;  4CEL A;  4CSI A;  2RG0 A;  4C4D A;  1OJK A;  4XNN A;  4ZZQ A;  2V3I A;  4GWA A;  4D5J A;  4D5Q A;  4XEB A;  3CEL A;  3PFJ A;  5CEL A;  1OVW A;  4P1H A;  1Q2E A;  4UWT A;  3PL3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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