4C69X

Atp binding to murine voltage-dependent anion channel 1 (mvdac1).
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
283
structure length
283
Chain Sequence
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1
publication title Structure-Guided Simulations Illuminate the Mechanism of ATP Transport Through Vdac1.
pubmed doi rcsb
source organism Mus musculus
total genus 67
structure length 283
sequence length 283
ec nomenclature
pdb deposition date 2013-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01459 Porin_3 Eukaryotic porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4c69X00
3VY8X 2FGRA 3SZVA 7PRNA 2Y2XA 4RJXA 2OMFA 3UPGA 3HWBA 1PRNA 2PRNA 1BT9A 3POUA 3VY9X 5DL6A 3POQA 3POXA 4KRAA 3WI4A 3T20A 2XE2A 2Y0HA 2J1NA 4LSEA 4LSHA 1HXUA 3FYXA 3SY9A 2XE5A 3A2SX 1MPFA 4LSFA 4KR8A 1OSMA 8PRNA 4D65A 2K4TA 4AUIA 5PRNA 4RJWA 5DL5A 3HW9A 1GFPA 4D5UA 4FT6A 3VZWX 1OPFA 2XE3A 3K19A 3NSGA 3VZUX 3UU2A 3SY7A 3T24A 4KR4A 5FVNA 2QTKA 3SYBA 1GFOA 5DL7A 1GFNA 4FRXA 1H6S1 4JFBA 4FSOA 2Y0KA 4LSIA 3VZTX 2ZLDA 3PORA 4C69X 3EMNX 4FOZA 4FRTA 1HXTA 2XG6A 3O0EA 4GCSA 3SZDA 3WI5A 4GCQA 3T0SA 3PRNA 2ZFGA 1E54A 2PORA 4BUMX 1BH3A 4D64A 3JTYA 1HXXA 6PRNA 2O4VA 5JDPA 4FSPA 2J4UP 1PHOA 2ODJA 5DL8A 3SYSA 4FMSA 2FGQX 4GCPA 1GFMA 1GFQA 2Y0LA 2XE1A
chains in the Genus database with same CATH superfamily
3VY8X 5G26A 2MNHA 3PGRA 4C4VB 2FGRA 3DWNA 4PR7A 2JQYA 3SZVA 7PRNA 2Y7SA 4AZLA 4JCHA 1S5LO 2XTRA 1IZNB 2Y2XA 3BS0A 4O3WA 4RJXA 2OMFA 3VY9X 3HWBA 5B66O 1PRNA 4O49A 3UPGA 2PRNA 3DWOX 3BRZA 1BT9A 5G38A 1THQA 2X27X 3POUA 3QRCA 3G7GA 2R4NA 4O4XA 4XNKA 2AXTO 5DL6A 1YS5A 4N59A 2MHLA 1ORMA 3LK41 3VE2A 4IL6O 3KZIO 3AAAA 3LK3B 3POQA 3AAEB 3POXA 4KRAA 5GTIO 3QRAA 2M06A 3WI4A 4GF4A 2R4OA 3PGUA 3AA6B 4FUVA 4FZMA 5G39A 2KXPB 4F4BA 3T20A 2XE2A 2Y0HA 2J1NA 4LSEA 4G76A 4LSHA 2ERVA 5EE2A 2IWWA 4AYEC 1HXUA 1QJ8A 5D5DA 5G3AA 5AFUK 3FYXA 1MM5A 2F1CX 4AKRA 3NJTA 2N2LA 2WJQA 3SY9A 4O3XB 3AA0A 2XE5A 4N58A 1ZHYA 3A2SX 3PGSA 4O3ZA 5H2FO 1MPFA 4LSFA 4KR8A 4AFKA 1OSMA 8PRNA 2WVPA 4D65A 2K4TA 3GP6A 4AUIA 3HOLA 1P4TA 5T5FA 4AKMA 5PRNA 5IYUA 3AA1A 2KZ7A 2KDYA 4RJWA 5DL5A 1QJPA 1Q9GA 3HW9A 3UAQA 1GFPA 4N74A 1MM4A 2GE4A 2R4PA 4FT6A 3VZWX 4D5UA 1OPFA 2W81C 3AAAB 2XE3A 2XMXA 3A0BO 3K19A 3NSGA 4RLBA 3HOEA 3VZUX 1ZHXA 3UU2A 4U9CA 2IWVA 3SY7A 1T16A 2N2MA 4FZNA 4KR4A 3T24A 2XTQA 5FVNA 3JCUO 4E1SA 4E1TA 2QTKA 3SYBA 5KAFO 1GFOA 5DL7A 1GFNA 4AKRB 3TZGA 4D64A 2R8AA 3AA0B 2WJRA 3LK42 4C00A 3AA7A 4FRXA 5GV0A 1H6S1 3LK2A 3VE1A 4JFBA 4Z3TA 1BXWA 2K0LA 4FSOA 2Y0KA 1T1LA 4LSIA 3VZTX 4UB8O 2ZLDA 3PORA 4GHBA 1Q9FA 3C5OA 2YPVA 4C69X 4N75A 4FESA 2KZ7B 3EMNX 4FOZA 5KAIO 3BRYA 3KVDD 4FRTA 3PQSA 4QQ1A 1HXTA 5AFUL 4C4VA 2XG6A 3O0EA 2JMMA 3PQUA 4O3YA 4AYMC 3WU2O 4FZLA 1IZNA 4PUXA 5ADXK 2X9KA 4GCSA 3SZDA 2F1VA 3WI5A 3A0HO 4AYDC 4CTDA 5GTHO 4RLCA 5E79O 2R88A 3PF1A 2LHFA 2R89A 2M07A 4GCQA 3T0SA 3PRNA 2F1TA 2ZFGA 1E54A 2PORA 2W80C 1BH3A 3LK3A 4O4UA 3JTYA 3AAEA 1HXXA 4K3BA 4BUMX 4XNLA 4AYID 6PRNA 4UB6O 3AA6A 4AYNA 2KXPA 4PJ0O 2R4LA 2O4VA 1ZHWA 5JDPA 1G90A 3DZMA 4B61A 4FSPA 1ZHZA 1PHOA 2ODJA 5ADXL 3AA7B 2J4UP 3LK2B 4G75A 4K3CA 4RL9A 5TISO 3AA1B 5DL8A 3V8UA 3SYSA 2FGQX 2Y0LA 4FMSA 1GFMA 1GFQA 1QJ9A 1ZHTA 2LFUA 2KC0A 4FQEA 4GCPA 2YNKA 2XE1A 3RBHA 5B5EO 3DA3A 3DA4A
chains in the Genus database with same CATH topology
3VY8X 5G26A 2MNHA 2FGRA 3SZVA 7PRNA 2Y7SA 4AZLA 4JCHA 2XTRA 1IZNB 2Y2XA 4O3WA 4RJXA 2OMFA 3UPGA 3HWBA 1PRNA 4O49A 2PRNA 1BT9A 1THQA 2X27X 3POUA 3QRCA 3G7GA 4O4XA 4XNKA 3UAQA 5DL6A 3VY9X 1YS5A 4N59A 2MHLA 1ORMA 3LK41 3VE2A 3POQA 3AAAA 3LK3B 3AAEB 3POXA 4KRAA 3QRAA 2M06A 3WI4A 4GF4A 4FUVA 3AA6B 4FZMA 3T20A 2KXPB 4F4BA 2XE2A 2Y0HA 2J1NA 4LSEA 4G76A 4LSHA 2ERVA 5EE2A 4AYEC 1HXUA 1QJ8A 5D5DA 5AFUK 3FYXA 1MM5A 4AKRA 2N2LA 3SY9A 4O3XB 3AA0A 2XE5A 4N58A 1ZHYA 3A2SX 4O3ZA 1MPFA 4LSFA 4KR8A 4AFKA 1OSMA 8PRNA 4D65A 2K4TA 3GP6A 4AUIA 3HOLA 1P4TA 5T5FA 4AKMA 5PRNA 5IYUA 3AA1A 2KZ7A 2KDYA 4RJWA 5DL5A 1QJPA 1Q9GA 3HW9A 1GFPA 1MM4A 2GE4A 4D5UA 4FT6A 3VZWX 1OPFA 2W81C 3AAAB 2XE3A 2XMXA 3K19A 3NSGA 4RLBA 3HOEA 3VZUX 1ZHXA 3UU2A 4U9CA 3SY7A 2N2MA 4FZNA 4KR4A 3T24A 2XTQA 5FVNA 4E1SA 4E1TA 2QTKA 3SYBA 1GFOA 5DL7A 1GFNA 4AKRB 3TZGA 4D64A 3AA0B 3LK42 3AA7A 4FRXA 5GV0A 1H6S1 3LK2A 3VE1A 4JFBA 4Z3TA 1BXWA 2K0LA 4FSOA 2Y0KA 4LSIA 3VZTX 2ZLDA 3PORA 4GHBA 1Q9FA 3C5OA 2YPVA 4C69X 4FESA 2KZ7B 3EMNX 4FOZA 3KVDD 4FRTA 4QQ1A 3PQSA 5AFUL 1HXTA 2XG6A 3O0EA 2JMMA 3PQUA 4O3YA 4AYMC 4FZLA 1IZNA 4PUXA 5ADXK 4GCSA 3SZDA 2F1VA 3WI5A 4AYDC 4RLCA 2LHFA 2M07A 4GCQA 3T0SA 3PRNA 2F1TA 2ZFGA 1E54A 2PORA 2W80C 1BH3A 3LK3A 4O4UA 3JTYA 3AAEA 1HXXA 4RL9A 4BUMX 4XNLA 4AYID 6PRNA 3AA6A 4AYNA 2KXPA 2O4VA 1ZHWA 5JDPA 1G90A 4B61A 4FSPA 1ZHZA 1PHOA 2ODJA 2J4UP 3AA7B 3LK2B 4G75A 3V8UA 3AA1B 5DL8A 5ADXL 3SYSA 2FGQX 2Y0LA 4FMSA 1GFMA 1GFQA 1QJ9A 1ZHTA 2LFUA 2KC0A 4GCPA 2YNKA 2XE1A 3RBHA 3DA3A 3DA4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VY8 X;  2FGR A;  3SZV A;  7PRN A;  2Y2X A;  4RJX A;  2OMF A;  3UPG A;  3HWB A;  1PRN A;  2PRN A;  1BT9 A;  3POU A;  3VY9 X;  5DL6 A;  3POQ A;  3POX A;  4KRA A;  3WI4 A;  3T20 A;  2XE2 A;  2Y0H A;  2J1N A;  4LSE A;  4LSH A;  1HXU A;  3FYX A;  3SY9 A;  2XE5 A;  3A2S X;  1MPF A;  4LSF A;  4KR8 A;  1OSM A;  8PRN A;  4D65 A;  2K4T A;  4AUI A;  5PRN A;  4RJW A;  5DL5 A;  3HW9 A;  1GFP A;  4D5U A;  4FT6 A;  3VZW X;  1OPF A;  2XE3 A;  3K19 A;  3NSG A;  3VZU X;  3UU2 A;  3SY7 A;  3T24 A;  4KR4 A;  5FVN A;  2QTK A;  3SYB A;  1GFO A;  5DL7 A;  1GFN A;  4FRX A;  1H6S 1;  4JFB A;  4FSO A;  2Y0K A;  4LSI A;  3VZT X;  2ZLD A;  3POR A;  4C69 X;  3EMN X;  4FOZ A;  4FRT A;  1HXT A;  2XG6 A;  3O0E A;  4GCS A;  3SZD A;  3WI5 A;  4GCQ A;  3T0S A;  3PRN A;  2ZFG A;  1E54 A;  2POR A;  4BUM X;  1BH3 A;  4D64 A;  3JTY A;  1HXX A;  6PRN A;  2O4V A;  5JDP A;  4FSP A;  2J4U P;  1PHO A;  2ODJ A;  5DL8 A;  3SYS A;  4FMS A;  2FGQ X;  4GCP A;  1GFM A;  1GFQ A;  2Y0L A;  2XE1 A; 
#chains in the Genus database with same CATH topology
 3VY8 X;  5G26 A;  2MNH A;  3PGR A;  4C4V B;  2FGR A;  3DWN A;  4PR7 A;  2JQY A;  3SZV A;  7PRN A;  2Y7S A;  4AZL A;  4JCH A;  1S5L O;  2XTR A;  1IZN B;  2Y2X A;  3BS0 A;  4O3W A;  4RJX A;  2OMF A;  3VY9 X;  3HWB A;  5B66 O;  1PRN A;  4O49 A;  3UPG A;  2PRN A;  3DWO X;  3BRZ A;  1BT9 A;  5G38 A;  1THQ A;  2X27 X;  3POU A;  3QRC A;  3G7G A;  2R4N A;  4O4X A;  4XNK A;  2AXT O;  5DL6 A;  1YS5 A;  4N59 A;  2MHL A;  1ORM A;  3LK4 1;  3VE2 A;  4IL6 O;  3KZI O;  3AAA A;  3LK3 B;  3POQ A;  3AAE B;  3POX A;  4KRA A;  5GTI O;  3QRA A;  2M06 A;  3WI4 A;  4GF4 A;  2R4O A;  3PGU A;  3AA6 B;  4FUV A;  4FZM A;  5G39 A;  2KXP B;  4F4B A;  3T20 A;  2XE2 A;  2Y0H A;  2J1N A;  4LSE A;  4G76 A;  4LSH A;  2ERV A;  5EE2 A;  2IWW A;  4AYE C;  1HXU A;  1QJ8 A;  5D5D A;  5G3A A;  5AFU K;  3FYX A;  1MM5 A;  2F1C X;  4AKR A;  3NJT A;  2N2L A;  2WJQ A;  3SY9 A;  4O3X B;  3AA0 A;  2XE5 A;  4N58 A;  1ZHY A;  3A2S X;  3PGS A;  4O3Z A;  5H2F O;  1MPF A;  4LSF A;  4KR8 A;  4AFK A;  1OSM A;  8PRN A;  2WVP A;  4D65 A;  2K4T A;  3GP6 A;  4AUI A;  3HOL A;  1P4T A;  5T5F A;  4AKM A;  5PRN A;  5IYU A;  3AA1 A;  2KZ7 A;  2KDY A;  4RJW A;  5DL5 A;  1QJP A;  1Q9G A;  3HW9 A;  3UAQ A;  1GFP A;  4N74 A;  1MM4 A;  2GE4 A;  2R4P A;  4FT6 A;  3VZW X;  4D5U A;  1OPF A;  2W81 C;  3AAA B;  2XE3 A;  2XMX A;  3A0B O;  3K19 A;  3NSG A;  4RLB A;  3HOE A;  3VZU X;  1ZHX A;  3UU2 A;  4U9C A;  2IWV A;  3SY7 A;  1T16 A;  2N2M A;  4FZN A;  4KR4 A;  3T24 A;  2XTQ A;  5FVN A;  3JCU O;  4E1S A;  4E1T A;  2QTK A;  3SYB A;  5KAF O;  1GFO A;  5DL7 A;  1GFN A;  4AKR B;  3TZG A;  4D64 A;  2R8A A;  3AA0 B;  2WJR A;  3LK4 2;  4C00 A;  3AA7 A;  4FRX A;  5GV0 A;  1H6S 1;  3LK2 A;  3VE1 A;  4JFB A;  4Z3T A;  1BXW A;  2K0L A;  4FSO A;  2Y0K A;  1T1L A;  4LSI A;  3VZT X;  4UB8 O;  2ZLD A;  3POR A;  4GHB A;  1Q9F A;  3C5O A;  2YPV A;  4C69 X;  4N75 A;  4FES A;  2KZ7 B;  3EMN X;  4FOZ A;  5KAI O;  3BRY A;  3KVD D;  4FRT A;  3PQS A;  4QQ1 A;  1HXT A;  5AFU L;  4C4V A;  2XG6 A;  3O0E A;  2JMM A;  3PQU A;  4O3Y A;  4AYM C;  3WU2 O;  4FZL A;  1IZN A;  4PUX A;  5ADX K;  2X9K A;  4GCS A;  3SZD A;  2F1V A;  3WI5 A;  3A0H O;  4AYD C;  4CTD A;  5GTH O;  4RLC A;  5E79 O;  2R88 A;  3PF1 A;  2LHF A;  2R89 A;  2M07 A;  4GCQ A;  3T0S A;  3PRN A;  2F1T A;  2ZFG A;  1E54 A;  2POR A;  2W80 C;  1BH3 A;  3LK3 A;  4O4U A;  3JTY A;  3AAE A;  1HXX A;  4K3B A;  4BUM X;  4XNL A;  4AYI D;  6PRN A;  4UB6 O;  3AA6 A;  4AYN A;  2KXP A;  4PJ0 O;  2R4L A;  2O4V A;  1ZHW A;  5JDP A;  1G90 A;  3DZM A;  4B61 A;  4FSP A;  1ZHZ A;  1PHO A;  2ODJ A;  5ADX L;  3AA7 B;  2J4U P;  3LK2 B;  4G75 A;  4K3C A;  4RL9 A;  5TIS O;  3AA1 B;  5DL8 A;  3V8U A;  3SYS A;  2FGQ X;  2Y0L A;  4FMS A;  1GFM A;  1GFQ A;  1QJ9 A;  1ZHT A;  2LFU A;  2KC0 A;  4FQE A;  4GCP A;  2YNK A;  2XE1 A;  3RBH A;  5B5E O;  3DA3 A;  3DA4 A; 
#chains in the Genus database with same CATH homology
 3VY8 X;  5G26 A;  2MNH A;  2FGR A;  3SZV A;  7PRN A;  2Y7S A;  4AZL A;  4JCH A;  2XTR A;  1IZN B;  2Y2X A;  4O3W A;  4RJX A;  2OMF A;  3UPG A;  3HWB A;  1PRN A;  4O49 A;  2PRN A;  1BT9 A;  1THQ A;  2X27 X;  3POU A;  3QRC A;  3G7G A;  4O4X A;  4XNK A;  3UAQ A;  5DL6 A;  3VY9 X;  1YS5 A;  4N59 A;  2MHL A;  1ORM A;  3LK4 1;  3VE2 A;  3POQ A;  3AAA A;  3LK3 B;  3AAE B;  3POX A;  4KRA A;  3QRA A;  2M06 A;  3WI4 A;  4GF4 A;  4FUV A;  3AA6 B;  4FZM A;  3T20 A;  2KXP B;  4F4B A;  2XE2 A;  2Y0H A;  2J1N A;  4LSE A;  4G76 A;  4LSH A;  2ERV A;  5EE2 A;  4AYE C;  1HXU A;  1QJ8 A;  5D5D A;  5AFU K;  3FYX A;  1MM5 A;  4AKR A;  2N2L A;  3SY9 A;  4O3X B;  3AA0 A;  2XE5 A;  4N58 A;  1ZHY A;  3A2S X;  4O3Z A;  1MPF A;  4LSF A;  4KR8 A;  4AFK A;  1OSM A;  8PRN A;  4D65 A;  2K4T A;  3GP6 A;  4AUI A;  3HOL A;  1P4T A;  5T5F A;  4AKM A;  5PRN A;  5IYU A;  3AA1 A;  2KZ7 A;  2KDY A;  4RJW A;  5DL5 A;  1QJP A;  1Q9G A;  3HW9 A;  1GFP A;  1MM4 A;  2GE4 A;  4D5U A;  4FT6 A;  3VZW X;  1OPF A;  2W81 C;  3AAA B;  2XE3 A;  2XMX A;  3K19 A;  3NSG A;  4RLB A;  3HOE A;  3VZU X;  1ZHX A;  3UU2 A;  4U9C A;  3SY7 A;  2N2M A;  4FZN A;  4KR4 A;  3T24 A;  2XTQ A;  5FVN A;  4E1S A;  4E1T A;  2QTK A;  3SYB A;  1GFO A;  5DL7 A;  1GFN A;  4AKR B;  3TZG A;  4D64 A;  3AA0 B;  3LK4 2;  3AA7 A;  4FRX A;  5GV0 A;  1H6S 1;  3LK2 A;  3VE1 A;  4JFB A;  4Z3T A;  1BXW A;  2K0L A;  4FSO A;  2Y0K A;  4LSI A;  3VZT X;  2ZLD A;  3POR A;  4GHB A;  1Q9F A;  3C5O A;  2YPV A;  4C69 X;  4FES A;  2KZ7 B;  3EMN X;  4FOZ A;  3KVD D;  4FRT A;  4QQ1 A;  3PQS A;  5AFU L;  1HXT A;  2XG6 A;  3O0E A;  2JMM A;  3PQU A;  4O3Y A;  4AYM C;  4FZL A;  1IZN A;  4PUX A;  5ADX K;  4GCS A;  3SZD A;  2F1V A;  3WI5 A;  4AYD C;  4RLC A;  2LHF A;  2M07 A;  4GCQ A;  3T0S A;  3PRN A;  2F1T A;  2ZFG A;  1E54 A;  2POR A;  2W80 C;  1BH3 A;  3LK3 A;  4O4U A;  3JTY A;  3AAE A;  1HXX A;  4RL9 A;  4BUM X;  4XNL A;  4AYI D;  6PRN A;  3AA6 A;  4AYN A;  2KXP A;  2O4V A;  1ZHW A;  5JDP A;  1G90 A;  4B61 A;  4FSP A;  1ZHZ A;  1PHO A;  2ODJ A;  2J4U P;  3AA7 B;  3LK2 B;  4G75 A;  3V8U A;  3AA1 B;  5DL8 A;  5ADX L;  3SYS A;  2FGQ X;  2Y0L A;  4FMS A;  1GFM A;  1GFQ A;  1QJ9 A;  1ZHT A;  2LFU A;  2KC0 A;  4GCP A;  2YNK A;  2XE1 A;  3RBH A;  3DA3 A;  3DA4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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