4C8UA

Xenopus znrf3 ectodomain crystal form ii
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
152
structure length
146
Chain Sequence
ETAFVEVVLFESSPNGDYKTHTTELQGRFSRAGATISAEGEIVQMHPLGLCDLYEYGWVGVVKLEQPEMDPKPCLTVLGKAKRAVQRGATAVIFDVSDNPDAVEQLNQGLEDPLKRPVVYMKGMDAIKLMNIVNKQKGARARIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Xenopus (silurana) tropicalis
total genus 33
structure length 146
sequence length 152
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c8uA00
3S9MA 1CX8A 4C8UA 4OC2A 3S9LA 4TWEA 3S9NA 4NGMA 4TJXA 4MCSA 2EK9A 2JBJA 3IWWA 2CIJA 3KASA 4C8FA 3BHXA 4C9AA 4OC3A 2PVWA 4KNGE 4C9EA 1XF1A 3SJXA 4C8CA 3D7FA 3EIFA 4OMEA 4P4EA 4MCQA 4C86A 5IB9A 2JBKA 3SJFA 3SJGA 4C8TA 2XEGA 3FF3A 3IIBA 4NGTA 4W9YA 3RBUA 4C99A 4P4DA 2XEIA 2XEFA 4NGQA 4C8PA 4C8AA 4C85A 2PVVA 4CDJA 2XEJA 4P4FA 4P44A 2C6PA 2C6CA 4NGNA 3D7GA 2OOTA 4X3RA 3I74A 3BXMA 1Y9ZA 4C9UA 4JYWA 4P45A 4OC1A 4C84A 2C6GA 5ELYA 4P4IA 1V6CA 4OC0A 4P4JA 4P4BA 3I6SA 4NGSA 3ICUA 2EK8A 3D7HA 5D29A 4C9RA 3SJEA 4MCRA 2OR4A 4OC4A 4LQGA 3D7DA 1DE4C 1WVMA 1Z8LA 4TJVA 4MCPA 3VTAA 4OC5A 4CDKA 3BI1A 4NGPA 3FEDA 4C9VA 3BI0A 4NGRA 4JZ0A 4YN3A 3FEEA 5F09A 3FECA
chains in the Genus database with same CATH superfamily
2FM4A 3S9MA 1T36B 1KC7A 1CX8A 4C8UA 1KBLA 4OC2A 3S9LA 4TWEA 3TLYA 3TLGA 1ZRSA 2YJVA 3SR3A 3S9NA 2GP4A 2AUNA 4NGMA 4TJXA 2X0SA 4IIXA 4MCSA 2MP0A 4CO9A 2EK9A 2JBJA 3TLAA 3T0TA 3TLCA 3TYXA 2DIKA 3IWWA 1EZBA 2HWGA 2CIJA 3KASA 5F1YA 4C8FA 1DIKA 3BHXA 3EZAA 4C9AA 4OC3A 4E94A 4COGA 2PVWA 2OLSA 2EZCA 4M8DA 4KNGE 2PCNA 4C9EA 1XF1A 3U1BA 2AUMA 3SJXA 4C8CA 3D7FA 3EZBA 3EIFA 4OMEA 2D0OA 2YJTA 4P4EA 4MCQA 4C86A 5IB9A 3EZEA 2JBKA 4H1HA 3SJFA 5IR2A 3K4IA 3SJGA 3TLGB 4C8TA 2HROA 5JYBA 5F5XA 2EZBA 5JVLA 3T5MA 2XEGA 3FF3A 4MJXA 1NBWA 2R82A 3IIBA 4NGTA 4W9YA 3T05A 3RBUA 3TLEA 4C99A 2C5QA 4P4DA 1EZAA 2XEIA 2XEFA 4NGQA 5F09A 1R61A 4IIYA 4C8PA 1A9XB 1KEEB 4C8AA 4C85A 2PVVA 4CDJA 1J3LA 1NXJA 4CZ1A 2XEJA 4E5SA 4P4FA 1JDBC 2C6PA 4P44A 1Q5XA 2C6CA 1JDEA 4NGNA 3D7GA 2OOTA 5K99A 4X3RA 3I74A 3BXMA 1Y9ZA 4C9UA 4JYWA 4P45A 4OC1A 4C84A 2C6GA 5ELYA 4P4IA 4MI1A 3KRVA 1ZL0A 3TLBA 1C30B 1V6CA 4OC0A 4P4JA 1CS0B 4P4BA 3I6SA 4NGSA 5F9MA 3TLZA 2EZAA 3T07A 3ICUA 3K9TA 4EYSA 2EK8A 3GJZA 3D7HA 1GGOA 1VI4A 1ZYMA 5D29A 4C9RA 3SJEA 4COBA 3C8OA 4MCRA 2OR4A 4OC4A 1BXRB 1VBGA 2D0PA 1M6VB 1VBHA 2HI6A 4J0NA 3D7DA 4LQGA 1DE4C 1WVMA 1Z8LA 4INJA 4TJVA 4MCPA 3VTAA 5FD8A 4OC5A 3NOJA 3G23A 2E28A 4CDKA 3BI1A 4NGPA 1C3OB 2B0AA 3FEDA 4C9VA 3BI0A 4NGRA 4JZ0A 4YN3A 3FEEA 1CE8B 4JVOA 3FECA
chains in the Genus database with same CATH topology
3S9MA 1CX8A 4C8UA 4OC2A 3S9LA 4TWEA 3S9NA 2GP4A 4NGMA 4TJXA 4MCSA 2EK9A 2JBJA 3IWWA 2CIJA 3KASA 4C8FA 3BHXA 4C9AA 4OC3A 2PVWA 4KNGE 4C9EA 1XF1A 3SJXA 4C8CA 3D7FA 3EIFA 4OMEA 4P4EA 4MCQA 4C86A 5IB9A 2JBKA 3SJFA 5IR2A 3SJGA 4C8TA 2XEGA 3FF3A 3IIBA 4NGTA 4W9YA 3RBUA 4C99A 2C5QA 4P4DA 2XEIA 2XEFA 4NGQA 4C8PA 4C8AA 4C85A 2PVVA 4CDJA 2XEJA 4P4FA 4P44A 2C6PA 2C6CA 4NGNA 3D7GA 2OOTA 4X3RA 3I74A 3BXMA 1Y9ZA 4C9UA 4JYWA 4P45A 4OC1A 4C84A 2C6GA 5ELYA 4P4IA 1V6CA 4OC0A 4P4JA 4P4BA 3I6SA 4NGSA 3ICUA 3K9TA 2EK8A 3D7HA 5D29A 4C9RA 3SJEA 4MCRA 2OR4A 4OC4A 4LQGA 3D7DA 1DE4C 1WVMA 1Z8LA 4TJVA 4MCPA 3VTAA 4OC5A 4CDKA 3BI1A 4NGPA 3FEDA 4C9VA 3BI0A 4NGRA 4JZ0A 4YN3A 3FEEA 5F09A 3FECA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S9M A;  1CX8 A;  4C8U A;  4OC2 A;  3S9L A;  4TWE A;  3S9N A;  4NGM A;  4TJX A;  4MCS A;  2EK9 A;  2JBJ A;  3IWW A;  2CIJ A;  3KAS A;  4C8F A;  3BHX A;  4C9A A;  4OC3 A;  2PVW A;  4KNG E;  4C9E A;  1XF1 A;  3SJX A;  4C8C A;  3D7F A;  3EIF A;  4OME A;  4P4E A;  4MCQ A;  4C86 A;  5IB9 A;  2JBK A;  3SJF A;  3SJG A;  4C8T A;  2XEG A;  3FF3 A;  3IIB A;  4NGT A;  4W9Y A;  3RBU A;  4C99 A;  4P4D A;  2XEI A;  2XEF A;  4NGQ A;  4C8P A;  4C8A A;  4C85 A;  2PVV A;  4CDJ A;  2XEJ A;  4P4F A;  4P44 A;  2C6P A;  2C6C A;  4NGN A;  3D7G A;  2OOT A;  4X3R A;  3I74 A;  3BXM A;  1Y9Z A;  4C9U A;  4JYW A;  4P45 A;  4OC1 A;  4C84 A;  2C6G A;  5ELY A;  4P4I A;  1V6C A;  4OC0 A;  4P4J A;  4P4B A;  3I6S A;  4NGS A;  3ICU A;  2EK8 A;  3D7H A;  5D29 A;  4C9R A;  3SJE A;  4MCR A;  2OR4 A;  4OC4 A;  4LQG A;  3D7D A;  1DE4 C;  1WVM A;  1Z8L A;  4TJV A;  4MCP A;  3VTA A;  4OC5 A;  4CDK A;  3BI1 A;  4NGP A;  3FED A;  4C9V A;  3BI0 A;  4NGR A;  4JZ0 A;  4YN3 A;  3FEE A;  5F09 A;  3FEC A; 
#chains in the Genus database with same CATH topology
 2FM4 A;  3S9M A;  1T36 B;  1KC7 A;  1CX8 A;  4C8U A;  1KBL A;  4OC2 A;  3S9L A;  4TWE A;  3TLY A;  3TLG A;  1ZRS A;  2YJV A;  3SR3 A;  3S9N A;  2GP4 A;  2AUN A;  4NGM A;  4TJX A;  2X0S A;  4IIX A;  4MCS A;  2MP0 A;  4CO9 A;  2EK9 A;  2JBJ A;  3TLA A;  3T0T A;  3TLC A;  3TYX A;  2DIK A;  3IWW A;  1EZB A;  2HWG A;  2CIJ A;  3KAS A;  5F1Y A;  4C8F A;  1DIK A;  3BHX A;  3EZA A;  4C9A A;  4OC3 A;  4E94 A;  4COG A;  2PVW A;  2OLS A;  2EZC A;  4M8D A;  4KNG E;  2PCN A;  4C9E A;  1XF1 A;  3U1B A;  2AUM A;  3SJX A;  4C8C A;  3D7F A;  3EZB A;  3EIF A;  4OME A;  2D0O A;  2YJT A;  4P4E A;  4MCQ A;  4C86 A;  5IB9 A;  3EZE A;  2JBK A;  4H1H A;  3SJF A;  5IR2 A;  3K4I A;  3SJG A;  3TLG B;  4C8T A;  2HRO A;  5JYB A;  5F5X A;  2EZB A;  5JVL A;  3T5M A;  2XEG A;  3FF3 A;  4MJX A;  1NBW A;  2R82 A;  3IIB A;  4NGT A;  4W9Y A;  3T05 A;  3RBU A;  3TLE A;  4C99 A;  2C5Q A;  4P4D A;  1EZA A;  2XEI A;  2XEF A;  4NGQ A;  5F09 A;  1R61 A;  4IIY A;  4C8P A;  1A9X B;  1KEE B;  4C8A A;  4C85 A;  2PVV A;  4CDJ A;  1J3L A;  1NXJ A;  4CZ1 A;  2XEJ A;  4E5S A;  4P4F A;  1JDB C;  2C6P A;  4P44 A;  1Q5X A;  2C6C A;  1JDE A;  4NGN A;  3D7G A;  2OOT A;  5K99 A;  4X3R A;  3I74 A;  3BXM A;  1Y9Z A;  4C9U A;  4JYW A;  4P45 A;  4OC1 A;  4C84 A;  2C6G A;  5ELY A;  4P4I A;  4MI1 A;  3KRV A;  1ZL0 A;  3TLB A;  1C30 B;  1V6C A;  4OC0 A;  4P4J A;  1CS0 B;  4P4B A;  3I6S A;  4NGS A;  5F9M A;  3TLZ A;  2EZA A;  3T07 A;  3ICU A;  3K9T A;  4EYS A;  2EK8 A;  3GJZ A;  3D7H A;  1GGO A;  1VI4 A;  1ZYM A;  5D29 A;  4C9R A;  3SJE A;  4COB A;  3C8O A;  4MCR A;  2OR4 A;  4OC4 A;  1BXR B;  1VBG A;  2D0P A;  1M6V B;  1VBH A;  2HI6 A;  4J0N A;  3D7D A;  4LQG A;  1DE4 C;  1WVM A;  1Z8L A;  4INJ A;  4TJV A;  4MCP A;  3VTA A;  5FD8 A;  4OC5 A;  3NOJ A;  3G23 A;  2E28 A;  4CDK A;  3BI1 A;  4NGP A;  1C3O B;  2B0A A;  3FED A;  4C9V A;  3BI0 A;  4NGR A;  4JZ0 A;  4YN3 A;  3FEE A;  1CE8 B;  4JVO A;  3FEC A; 
#chains in the Genus database with same CATH homology
 3S9M A;  1CX8 A;  4C8U A;  4OC2 A;  3S9L A;  4TWE A;  3S9N A;  2GP4 A;  4NGM A;  4TJX A;  4MCS A;  2EK9 A;  2JBJ A;  3IWW A;  2CIJ A;  3KAS A;  4C8F A;  3BHX A;  4C9A A;  4OC3 A;  2PVW A;  4KNG E;  4C9E A;  1XF1 A;  3SJX A;  4C8C A;  3D7F A;  3EIF A;  4OME A;  4P4E A;  4MCQ A;  4C86 A;  5IB9 A;  2JBK A;  3SJF A;  5IR2 A;  3SJG A;  4C8T A;  2XEG A;  3FF3 A;  3IIB A;  4NGT A;  4W9Y A;  3RBU A;  4C99 A;  2C5Q A;  4P4D A;  2XEI A;  2XEF A;  4NGQ A;  4C8P A;  4C8A A;  4C85 A;  2PVV A;  4CDJ A;  2XEJ A;  4P4F A;  4P44 A;  2C6P A;  2C6C A;  4NGN A;  3D7G A;  2OOT A;  4X3R A;  3I74 A;  3BXM A;  1Y9Z A;  4C9U A;  4JYW A;  4P45 A;  4OC1 A;  4C84 A;  2C6G A;  5ELY A;  4P4I A;  1V6C A;  4OC0 A;  4P4J A;  4P4B A;  3I6S A;  4NGS A;  3ICU A;  3K9T A;  2EK8 A;  3D7H A;  5D29 A;  4C9R A;  3SJE A;  4MCR A;  2OR4 A;  4OC4 A;  4LQG A;  3D7D A;  1DE4 C;  1WVM A;  1Z8L A;  4TJV A;  4MCP A;  3VTA A;  4OC5 A;  4CDK A;  3BI1 A;  4NGP A;  3FED A;  4C9V A;  3BI0 A;  4NGR A;  4JZ0 A;  4YN3 A;  3FEE A;  5F09 A;  3FEC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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