4CEUB

1.58 a resolution native sporosarcina pasteurii urease
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
122
structure length
122
Chain Sequence
NYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELGYKGVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE SUBUNIT GAMMA
publication title Fluoride Inhibition of Sporosarcina Pasteurii Urease: Structure and Thermodynamics.
pubmed doi rcsb
total genus 29
structure length 122
sequence length 122
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2013-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 4ceuB00
1EJXB 4EPBB 1EJVB 3LA4A 1A5NB 1EJWB 5FSDB 1FWDB 1A5MB 1FWGB 1FWHB 5FSEB 1KRCB 1FWEB 1FWAB 1FWJB 4Z42B 1EJUB 1FWIB 1E9YA 1KRBB 2UBPB 4EPDB 3QGAA 1A5OB 1E9ZA 1EF2B 2KAUB 4G7EA 4GY7A 4CEXB 4CEUB 4EP8B 1A5KB 4UBPB 5A6TB 5G4HB 4EPEB 1FWBB 4GOAA 1EJSB 1IE7B 1S3TB 3UBPB 3QGKA 1UBPB 1A5LB 4AC7B 4H9MA 4G7EB 1EJRB 1EJTB 1FWCB 1KRAB 1FWFB
chains in the Genus database with same CATH superfamily
1EJXB 4EPBB 1EJVB 3LA4A 1A5NB 1EJWB 5FSDB 1FWDB 1A5MB 1FWGB 1FWHB 5FSEB 1KRCB 1FWEB 1FWAB 1FWJB 4Z42B 1EJUB 1FWIB 1E9YA 1KRBB 2UBPB 4EPDB 3QGAA 1A5OB 1E9ZA 1EF2B 2KAUB 4G7EA 4GY7A 4CEXB 4CEUB 4EP8B 1A5KB 4UBPB 5A6TB 5G4HB 4EPEB 1FWBB 4GOAA 1EJSB 1IE7B 1S3TB 3UBPB 3QGKA 1UBPB 1A5LB 4AC7B 4H9MA 4G7EB 1EJRB 1EJTB 1FWCB 1KRAB 1FWFB
chains in the Genus database with same CATH topology
1EJXB 4EPBB 1EJVB 3LA4A 1A5NB 1EJWB 5FSDB 1FWDB 1A5MB 1FWGB 1FWHB 5FSEB 1KRCB 1FWEB 1FWAB 1FWJB 4Z42B 1EJUB 1FWIB 1E9YA 1KRBB 2UBPB 4EPDB 3QGAA 1A5OB 1E9ZA 1EF2B 2KAUB 4G7EA 4GY7A 4CEXB 4CEUB 4EP8B 1A5KB 4UBPB 5A6TB 5G4HB 4EPEB 1FWBB 4GOAA 1EJSB 1IE7B 1S3TB 3UBPB 3QGKA 1UBPB 1A5LB 4AC7B 4H9MA 4G7EB 1EJRB 1EJTB 1FWCB 1KRAB 1FWFB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EJX B;  4EPB B;  1EJV B;  3LA4 A;  1A5N B;  1EJW B;  5FSD B;  1FWD B;  1A5M B;  1FWG B;  1FWH B;  5FSE B;  1KRC B;  1FWE B;  1FWA B;  1FWJ B;  4Z42 B;  1EJU B;  1FWI B;  1E9Y A;  1KRB B;  2UBP B;  4EPD B;  3QGA A;  1A5O B;  1E9Z A;  1EF2 B;  2KAU B;  4G7E A;  4GY7 A;  4CEX B;  4CEU B;  4EP8 B;  1A5K B;  4UBP B;  5A6T B;  5G4H B;  4EPE B;  1FWB B;  4GOA A;  1EJS B;  1IE7 B;  1S3T B;  3UBP B;  3QGK A;  1UBP B;  1A5L B;  4AC7 B;  4H9M A;  4G7E B;  1EJR B;  1EJT B;  1FWC B;  1KRA B;  1FWF B; 
#chains in the Genus database with same CATH topology
 1EJX B;  4EPB B;  1EJV B;  3LA4 A;  1A5N B;  1EJW B;  5FSD B;  1FWD B;  1A5M B;  1FWG B;  1FWH B;  5FSE B;  1KRC B;  1FWE B;  1FWA B;  1FWJ B;  4Z42 B;  1EJU B;  1FWI B;  1E9Y A;  1KRB B;  2UBP B;  4EPD B;  3QGA A;  1A5O B;  1E9Z A;  1EF2 B;  2KAU B;  4G7E A;  4GY7 A;  4CEX B;  4CEU B;  4EP8 B;  1A5K B;  4UBP B;  5A6T B;  5G4H B;  4EPE B;  1FWB B;  4GOA A;  1EJS B;  1IE7 B;  1S3T B;  3UBP B;  3QGK A;  1UBP B;  1A5L B;  4AC7 B;  4H9M A;  4G7E B;  1EJR B;  1EJT B;  1FWC B;  1KRA B;  1FWF B; 
#chains in the Genus database with same CATH homology
 1EJX B;  4EPB B;  1EJV B;  3LA4 A;  1A5N B;  1EJW B;  5FSD B;  1FWD B;  1A5M B;  1FWG B;  1FWH B;  5FSE B;  1KRC B;  1FWE B;  1FWA B;  1FWJ B;  4Z42 B;  1EJU B;  1FWI B;  1E9Y A;  1KRB B;  2UBP B;  4EPD B;  3QGA A;  1A5O B;  1E9Z A;  1EF2 B;  2KAU B;  4G7E A;  4GY7 A;  4CEX B;  4CEU B;  4EP8 B;  1A5K B;  4UBP B;  5A6T B;  5G4H B;  4EPE B;  1FWB B;  4GOA A;  1EJS B;  1IE7 B;  1S3T B;  3UBP B;  3QGK A;  1UBP B;  1A5L B;  4AC7 B;  4H9M A;  4G7E B;  1EJR B;  1EJT B;  1FWC B;  1KRA B;  1FWF B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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