4CEXA

1.59 a resolution fluoride inhibited sporosarcina pasteurii urease
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
99
structure length
99
Chain Sequence
HLNPAEKEKLQIFLASELLLRRKARGLKLNYPEAVAIITSFIMEGARDGKTVAMLMEEGKHVLTRDDVMEGVPEMIDDIQAEATFPDGTKLVTVHNPIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE SUBUNIT GAMMA
publication title Fluoride Inhibition of Sporosarcina Pasteurii Urease: Structure and Thermodynamics.
pubmed doi rcsb
total genus 29
structure length 99
sequence length 99
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2013-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 4cexA00
4G7EA 1FWEA 5A6TA 1KRCA 4EP8A 1FWGA 1FWHA 1UBPA 3QGAA 2UBPA 4CEUA 4EPDA 1FWDA 1EJXA 1KRBA 1A5NA 1EJUA 4FURA 2FVHA 4UBPA 4GOAA 1EJTA 1KRAA 1E9ZA 4H9MA 1FWAA 4Z42A 1A5KA 1FWCA 4CEXA 5G4HA 5FSEA 1A5LA 4GY7A 1A5MA 4EPEA 4G7EB 1EF2C 1FWFA 1FWJA 5FSDA 4EPBA 1EJVA 1E9YA 1S3TA 2KAUA 1EJSA 1A5OA 4AC7A 1EJRA 3QGKA 1FWBA 3UBPA 3LA4A 1EJWA 1FWIA 1IE7A
chains in the Genus database with same CATH superfamily
4G7EA 1FWEA 5A6TA 1KRCA 4EP8A 1FWGA 1FWHA 1UBPA 3QGAA 2UBPA 4CEUA 4EPDA 1FWDA 1EJXA 1KRBA 1A5NA 1EJUA 4FURA 2FVHA 4UBPA 4GOAA 1EJTA 1KRAA 1E9ZA 4H9MA 1FWAA 4Z42A 1A5KA 1FWCA 4CEXA 5G4HA 5FSEA 1A5LA 4GY7A 1A5MA 4EPEA 4G7EB 1EF2C 1FWFA 1FWJA 5FSDA 4EPBA 1EJVA 1E9YA 1S3TA 2KAUA 1EJSA 1A5OA 4AC7A 1EJRA 3QGKA 1FWBA 3UBPA 3LA4A 1EJWA 1FWIA 1IE7A
chains in the Genus database with same CATH topology
4G7EA 1FWEA 5A6TA 1KRCA 4EP8A 1FWGA 1FWHA 1UBPA 3QGAA 2UBPA 4CEUA 4EPDA 1FWDA 1EJXA 1KRBA 1A5NA 1EJUA 4FURA 2FVHA 4UBPA 4GOAA 1EJTA 1KRAA 1E9ZA 4H9MA 1FWAA 4Z42A 1A5KA 1FWCA 4CEXA 5G4HA 5FSEA 1A5LA 4GY7A 1A5MA 4EPEA 4G7EB 1EF2C 1FWFA 1FWJA 5FSDA 4EPBA 1EJVA 1E9YA 1S3TA 2KAUA 1EJSA 1A5OA 4AC7A 1EJRA 3QGKA 1FWBA 3UBPA 3LA4A 1EJWA 1FWIA 1IE7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G7E A;  1FWE A;  5A6T A;  1KRC A;  4EP8 A;  1FWG A;  1FWH A;  1UBP A;  3QGA A;  2UBP A;  4CEU A;  4EPD A;  1FWD A;  1EJX A;  1KRB A;  1A5N A;  1EJU A;  4FUR A;  2FVH A;  4UBP A;  4GOA A;  1EJT A;  1KRA A;  1E9Z A;  4H9M A;  1FWA A;  4Z42 A;  1A5K A;  1FWC A;  4CEX A;  5G4H A;  5FSE A;  1A5L A;  4GY7 A;  1A5M A;  4EPE A;  4G7E B;  1EF2 C;  1FWF A;  1FWJ A;  5FSD A;  4EPB A;  1EJV A;  1E9Y A;  1S3T A;  2KAU A;  1EJS A;  1A5O A;  4AC7 A;  1EJR A;  3QGK A;  1FWB A;  3UBP A;  3LA4 A;  1EJW A;  1FWI A;  1IE7 A; 
#chains in the Genus database with same CATH topology
 4G7E A;  1FWE A;  5A6T A;  1KRC A;  4EP8 A;  1FWG A;  1FWH A;  1UBP A;  3QGA A;  2UBP A;  4CEU A;  4EPD A;  1FWD A;  1EJX A;  1KRB A;  1A5N A;  1EJU A;  4FUR A;  2FVH A;  4UBP A;  4GOA A;  1EJT A;  1KRA A;  1E9Z A;  4H9M A;  1FWA A;  4Z42 A;  1A5K A;  1FWC A;  4CEX A;  5G4H A;  5FSE A;  1A5L A;  4GY7 A;  1A5M A;  4EPE A;  4G7E B;  1EF2 C;  1FWF A;  1FWJ A;  5FSD A;  4EPB A;  1EJV A;  1E9Y A;  1S3T A;  2KAU A;  1EJS A;  1A5O A;  4AC7 A;  1EJR A;  3QGK A;  1FWB A;  3UBP A;  3LA4 A;  1EJW A;  1FWI A;  1IE7 A; 
#chains in the Genus database with same CATH homology
 4G7E A;  1FWE A;  5A6T A;  1KRC A;  4EP8 A;  1FWG A;  1FWH A;  1UBP A;  3QGA A;  2UBP A;  4CEU A;  4EPD A;  1FWD A;  1EJX A;  1KRB A;  1A5N A;  1EJU A;  4FUR A;  2FVH A;  4UBP A;  4GOA A;  1EJT A;  1KRA A;  1E9Z A;  4H9M A;  1FWA A;  4Z42 A;  1A5K A;  1FWC A;  4CEX A;  5G4H A;  5FSE A;  1A5L A;  4GY7 A;  1A5M A;  4EPE A;  4G7E B;  1EF2 C;  1FWF A;  1FWJ A;  5FSD A;  4EPB A;  1EJV A;  1E9Y A;  1S3T A;  2KAU A;  1EJS A;  1A5O A;  4AC7 A;  1EJR A;  3QGK A;  1FWB A;  3UBP A;  3LA4 A;  1EJW A;  1FWI A;  1IE7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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