4CEXB

1.59 a resolution fluoride inhibited sporosarcina pasteurii urease
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
122
structure length
122
Chain Sequence
NYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELGYKGVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE SUBUNIT GAMMA
publication title Fluoride Inhibition of Sporosarcina Pasteurii Urease: Structure and Thermodynamics.
pubmed doi rcsb
total genus 29
structure length 122
sequence length 122
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2013-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 4cexB00
2UBPB 3LA4A 3QGKA 4EPDB 1FWEB 1FWHB 1EJUB 4G7EB 1A5MB 1S3TB 1FWFB 4CEXB 4EP8B 4H9MA 1KRBB 4Z42B 1FWAB 1EJVB 1EJWB 1FWDB 5A6TB 4G7EA 1A5LB 5G4HB 1EJSB 2KAUB 5FSEB 4AC7B 1EJRB 1KRAB 1EJXB 1FWBB 1A5KB 1FWGB 1A5NB 3UBPB 4EPEB 1FWCB 1FWJB 1FWIB 1E9ZA 4GOAA 1KRCB 5FSDB 1IE7B 3QGAA 4EPBB 1A5OB 4CEUB 1UBPB 4GY7A 1EJTB 4UBPB 1E9YA 1EF2B
chains in the Genus database with same CATH superfamily
2UBPB 3LA4A 3QGKA 4EPDB 1FWEB 1FWHB 1EJUB 4G7EB 1A5MB 1S3TB 1FWFB 4CEXB 4EP8B 4H9MA 1KRBB 4Z42B 1FWAB 1EJVB 1EJWB 1FWDB 5A6TB 4G7EA 1A5LB 5G4HB 1EJSB 2KAUB 5FSEB 4AC7B 1EJRB 1KRAB 1EJXB 1FWBB 1A5KB 1FWGB 1A5NB 3UBPB 4EPEB 1FWCB 1FWJB 1FWIB 1E9ZA 4GOAA 1KRCB 5FSDB 1IE7B 3QGAA 4EPBB 1A5OB 4CEUB 1UBPB 4GY7A 1EJTB 4UBPB 1E9YA 1EF2B
chains in the Genus database with same CATH topology
2UBPB 3LA4A 3QGKA 4EPDB 1FWEB 1FWHB 1EJUB 4G7EB 1A5MB 1S3TB 1FWFB 4CEXB 4EP8B 4H9MA 1KRBB 4Z42B 1FWAB 1EJVB 1EJWB 1FWDB 5A6TB 4G7EA 1A5LB 5G4HB 1EJSB 2KAUB 5FSEB 4AC7B 1EJRB 1KRAB 1EJXB 1FWBB 1A5KB 1FWGB 1A5NB 3UBPB 4EPEB 1FWCB 1FWJB 1FWIB 1E9ZA 4GOAA 1KRCB 5FSDB 1IE7B 3QGAA 4EPBB 1A5OB 4CEUB 1UBPB 4GY7A 1EJTB 4UBPB 1E9YA 1EF2B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UBP B;  3LA4 A;  3QGK A;  4EPD B;  1FWE B;  1FWH B;  1EJU B;  4G7E B;  1A5M B;  1S3T B;  1FWF B;  4CEX B;  4EP8 B;  4H9M A;  1KRB B;  4Z42 B;  1FWA B;  1EJV B;  1EJW B;  1FWD B;  5A6T B;  4G7E A;  1A5L B;  5G4H B;  1EJS B;  2KAU B;  5FSE B;  4AC7 B;  1EJR B;  1KRA B;  1EJX B;  1FWB B;  1A5K B;  1FWG B;  1A5N B;  3UBP B;  4EPE B;  1FWC B;  1FWJ B;  1FWI B;  1E9Z A;  4GOA A;  1KRC B;  5FSD B;  1IE7 B;  3QGA A;  4EPB B;  1A5O B;  4CEU B;  1UBP B;  4GY7 A;  1EJT B;  4UBP B;  1E9Y A;  1EF2 B; 
#chains in the Genus database with same CATH topology
 2UBP B;  3LA4 A;  3QGK A;  4EPD B;  1FWE B;  1FWH B;  1EJU B;  4G7E B;  1A5M B;  1S3T B;  1FWF B;  4CEX B;  4EP8 B;  4H9M A;  1KRB B;  4Z42 B;  1FWA B;  1EJV B;  1EJW B;  1FWD B;  5A6T B;  4G7E A;  1A5L B;  5G4H B;  1EJS B;  2KAU B;  5FSE B;  4AC7 B;  1EJR B;  1KRA B;  1EJX B;  1FWB B;  1A5K B;  1FWG B;  1A5N B;  3UBP B;  4EPE B;  1FWC B;  1FWJ B;  1FWI B;  1E9Z A;  4GOA A;  1KRC B;  5FSD B;  1IE7 B;  3QGA A;  4EPB B;  1A5O B;  4CEU B;  1UBP B;  4GY7 A;  1EJT B;  4UBP B;  1E9Y A;  1EF2 B; 
#chains in the Genus database with same CATH homology
 2UBP B;  3LA4 A;  3QGK A;  4EPD B;  1FWE B;  1FWH B;  1EJU B;  4G7E B;  1A5M B;  1S3T B;  1FWF B;  4CEX B;  4EP8 B;  4H9M A;  1KRB B;  4Z42 B;  1FWA B;  1EJV B;  1EJW B;  1FWD B;  5A6T B;  4G7E A;  1A5L B;  5G4H B;  1EJS B;  2KAU B;  5FSE B;  4AC7 B;  1EJR B;  1KRA B;  1EJX B;  1FWB B;  1A5K B;  1FWG B;  1A5N B;  3UBP B;  4EPE B;  1FWC B;  1FWJ B;  1FWI B;  1E9Z A;  4GOA A;  1KRC B;  5FSD B;  1IE7 B;  3QGA A;  4EPB B;  1A5O B;  4CEU B;  1UBP B;  4GY7 A;  1EJT B;  4UBP B;  1E9Y A;  1EF2 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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