4DBMA

Aplysia californica-achbp in complex with triazole 18
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
211
structure length
211
Chain Sequence
DDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine-binding protein
molecule keywords Soluble acetylcholine receptor
publication title Generation of candidate ligands for nicotinic acetylcholine receptors via in situ click chemistry with a soluble acetylcholine binding protein template.
pubmed doi rcsb
source organism Aplysia californica
total genus 51
structure length 211
sequence length 211
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2012-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4dbmA00
4UXUA 2BYSA 2XQAA 2YOEA 3JAFA 3P4WA 4IREA 2YMDA 4UM1A 3RQUA 2BR8A 4ZK4A 4AFHA 4TNWA 4ILBA 2Y7YA 4AFTA 5SYOA 4NZBA 3WTMA 2C9TA 2Y58A 3TLVA 2WNCA 2XQ6A 3RHWA 4A98A 4ZJSA 2BG9E 4ALXA 4EZ1A 5HEOA 4UY2A 2Y54A 3UU8A 3SH1A 5TVCA 4QH1A 3WTLA 3U8MA 4HFBA 5HEJA 3RIAA 5J5IA 5AFJA 3SQ6A 4B5DA 2XNUA 2W8GA 5FJVA 4TWDA 4A97A 5BRXA 4TWFA 3ZDHA 3PMZA 4ZK1A 2XQ4A 3GUAA 2BG9B 4BFQA 4TWHA 4BQTA 5IUXA 4D01A 3UQ7A 2ZJVA 3P50A 4QABA 5J0ZA 2WZYA 5HCMA 5L47A 3ZKRA 3U8KA 4AFGA 3TLSA 3UQ4A 2VL0A 3WTJA 5J5FA 2Y56A 3RQWA 4COFA 3JAEA 2YKSA 4UM3P 3WTIA 2XQ5A 5AFHA 5AINA 4IL4A 4QH5A 2XZ6A 5LXBA 3WIPA 4UM3A 4WV9A 2XQ7A 5KE4A 2XYTA 4HQPA 3SQ9A 2XNTA 4TNVA 2Y57A 2PH9A 3U8LA 4ILAA 3TLUA 2QC1B 4ZZCA 3U8NA 2XNVA 5AFMB 5HCJA 5BW2A 1I9BA 3IGQA 4UM3S 4LMLA 2XQ8A 3UU5A 3T4MA 5AFMA 2XZ5A 4XK9A 4NPPA 4PIRA 2BYRA 1UV6A 5HEHA 3UUBA 4X5TA 4QH4A 4FRRA 3TLWA 2XQ9A 2UZ6A 2BG9C 2BJ0A 3EAMA 4QACA 5KZUA 2WNJA 5L4HA 4QAAA 2XYSA 2YN6A 5J5GA 3TLTA 2X00D 5AFKA 2BR7A 4ILCA 5CFBA 3RIFA 5JMEA 3LSVA 2BYPA 5J5HA 1UW6A 2YMEA 2BG9A 3EI0A 4HFCA 2WN9A 4IL9A 5AFLA 5L4EA 2PGZA 4ZR6A 4ZZBA 2ZJUA 5LG3A 3JADA 3EHZA 2BYQA 4HFDA 5CO5A 5AFNA 3C79A 2WNLA 4HFHA 3RI5A 3UU3A 4LMJA 4DBMA 3PEOA 3SIOA 4F8HA 3UU4A 4XHEA 4HFIA 4ZRUA 3WTNA 3ZDGA 3WTHA 4ZJTA 4HFEA 3WTOA 4LMKA 5BP0A 2W8FA 3U8JA 5HEGA 3UU6A 3C84A 3WTKA 4Z90A 2BYNA 4Z91A 5HEUA 1UX2A 2XQ3A 2X00A
chains in the Genus database with same CATH superfamily
4UXUA 2BYSA 2XQAA 2YOEA 3JAFA 3P4WA 4IREA 2YMDA 4UM1A 3RQUA 2BR8A 4ZK4A 4AFHA 4TNWA 4ILBA 2Y7YA 4AFTA 5SYOA 4NZBA 3WTMA 2C9TA 2Y58A 3TLVA 2WNCA 2XQ6A 3RHWA 4A98A 4ZJSA 2BG9E 4ALXA 4EZ1A 5HEOA 4UY2A 2Y54A 3UU8A 3SH1A 5TVCA 4QH1A 3WTLA 3U8MA 4HFBA 5HEJA 3RIAA 5J5IA 5AFJA 3SQ6A 4B5DA 2XNUA 2W8GA 5FJVA 4TWDA 4A97A 5BRXA 4TWFA 3ZDHA 3PMZA 4ZK1A 2XQ4A 3GUAA 2BG9B 4BFQA 4TWHA 4BQTA 5IUXA 4D01A 3UQ7A 2ZJVA 3P50A 4QABA 5J0ZA 2WZYA 5HCMA 5L47A 3ZKRA 3U8KA 4AFGA 3TLSA 3UQ4A 2VL0A 3WTJA 5J5FA 2Y56A 3RQWA 4COFA 3JAEA 2YKSA 4UM3P 3WTIA 2XQ5A 5AFHA 5AINA 4IL4A 4QH5A 2XZ6A 5LXBA 3WIPA 4UM3A 4WV9A 2XQ7A 5KE4A 2XYTA 4HQPA 3SQ9A 2XNTA 4TNVA 2Y57A 2PH9A 3U8LA 4ILAA 3TLUA 2QC1B 4ZZCA 3U8NA 2XNVA 5AFMB 5HCJA 5BW2A 1I9BA 3IGQA 4UM3S 4LMLA 2XQ8A 3UU5A 3T4MA 5AFMA 2XZ5A 4XK9A 4NPPA 4PIRA 2BYRA 1UV6A 5HEHA 3UUBA 4X5TA 4QH4A 4FRRA 3TLWA 2XQ9A 2UZ6A 2BG9C 2BJ0A 3EAMA 4QACA 5KZUA 2WNJA 5L4HA 4QAAA 2XYSA 2YN6A 5J5GA 3TLTA 2X00D 5AFKA 2BR7A 4ILCA 5CFBA 3RIFA 5JMEA 3LSVA 2BYPA 5J5HA 1UW6A 2YMEA 2BG9A 3EI0A 4HFCA 2WN9A 4IL9A 5AFLA 5L4EA 2PGZA 4ZR6A 4ZZBA 2ZJUA 5LG3A 3JADA 3EHZA 2BYQA 4HFDA 5CO5A 5AFNA 3C79A 2WNLA 4HFHA 3RI5A 3UU3A 4LMJA 4DBMA 3PEOA 3SIOA 4F8HA 3UU4A 4XHEA 4HFIA 4ZRUA 3WTNA 3ZDGA 3WTHA 4ZJTA 4HFEA 3WTOA 4LMKA 5BP0A 2W8FA 3U8JA 5HEGA 3UU6A 3C84A 3WTKA 4Z90A 2BYNA 4Z91A 5HEUA 1UX2A 2XQ3A 2X00A
chains in the Genus database with same CATH topology
4UXUA 2BYSA 2XQAA 2YOEA 3JAFA 3P4WA 4IREA 2YMDA 4UM1A 3RQUA 2BR8A 4ZK4A 4AFHA 4TNWA 4ILBA 2Y7YA 4AFTA 5SYOA 4NZBA 3WTMA 2C9TA 2Y58A 3TLVA 2WNCA 2XQ6A 3RHWA 4A98A 4ZJSA 2BG9E 4ALXA 4EZ1A 5HEOA 4UY2A 2Y54A 3UU8A 3SH1A 5TVCA 4QH1A 3WTLA 3U8MA 4HFBA 5HEJA 3RIAA 5J5IA 5AFJA 3SQ6A 4B5DA 2XNUA 2W8GA 5FJVA 4TWDA 4A97A 5BRXA 4TWFA 3ZDHA 3PMZA 4ZK1A 2XQ4A 3GUAA 2BG9B 4BFQA 4TWHA 4BQTA 5IUXA 4D01A 3UQ7A 2ZJVA 3P50A 4QABA 5J0ZA 2WZYA 5HCMA 5L47A 3ZKRA 3U8KA 4AFGA 3TLSA 3UQ4A 2VL0A 3WTJA 5J5FA 2Y56A 3RQWA 4COFA 3JAEA 2YKSA 4UM3P 3WTIA 2XQ5A 5AFHA 5AINA 4IL4A 4QH5A 2XZ6A 5LXBA 3WIPA 4UM3A 4WV9A 2XQ7A 5KE4A 2XYTA 4HQPA 3SQ9A 2XNTA 4TNVA 2Y57A 2PH9A 3U8LA 4ILAA 3TLUA 2QC1B 4ZZCA 3U8NA 2XNVA 5AFMB 5HCJA 5BW2A 1I9BA 3IGQA 4UM3S 4LMLA 2XQ8A 3UU5A 3T4MA 5AFMA 2XZ5A 4XK9A 4NPPA 4PIRA 2BYRA 1UV6A 5HEHA 3UUBA 4X5TA 4QH4A 4FRRA 3TLWA 2XQ9A 2UZ6A 2BG9C 2BJ0A 3EAMA 4QACA 5KZUA 2WNJA 5L4HA 4QAAA 2XYSA 2YN6A 5J5GA 3TLTA 2X00D 5AFKA 2BR7A 4ILCA 5CFBA 3RIFA 5JMEA 3LSVA 2BYPA 5J5HA 1UW6A 2YMEA 2BG9A 3EI0A 4HFCA 2WN9A 4IL9A 5AFLA 5L4EA 2PGZA 4ZR6A 4ZZBA 2ZJUA 5LG3A 3JADA 3EHZA 2BYQA 4HFDA 5CO5A 5AFNA 3C79A 2WNLA 4HFHA 3RI5A 3UU3A 4LMJA 4DBMA 3PEOA 3SIOA 4F8HA 3UU4A 4XHEA 4HFIA 4ZRUA 3WTNA 3ZDGA 3WTHA 4ZJTA 4HFEA 3WTOA 4LMKA 5BP0A 2W8FA 3U8JA 5HEGA 3UU6A 3C84A 3WTKA 4Z90A 2BYNA 4Z91A 5HEUA 1UX2A 2XQ3A 2X00A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UXU A;  2BYS A;  2XQA A;  2YOE A;  3JAF A;  3P4W A;  4IRE A;  2YMD A;  4UM1 A;  3RQU A;  2BR8 A;  4ZK4 A;  4AFH A;  4TNW A;  4ILB A;  2Y7Y A;  4AFT A;  5SYO A;  4NZB A;  3WTM A;  2C9T A;  2Y58 A;  3TLV A;  2WNC A;  2XQ6 A;  3RHW A;  4A98 A;  4ZJS A;  2BG9 E;  4ALX A;  4EZ1 A;  5HEO A;  4UY2 A;  2Y54 A;  3UU8 A;  3SH1 A;  5TVC A;  4QH1 A;  3WTL A;  3U8M A;  4HFB A;  5HEJ A;  3RIA A;  5J5I A;  5AFJ A;  3SQ6 A;  4B5D A;  2XNU A;  2W8G A;  5FJV A;  4TWD A;  4A97 A;  5BRX A;  4TWF A;  3ZDH A;  3PMZ A;  4ZK1 A;  2XQ4 A;  3GUA A;  2BG9 B;  4BFQ A;  4TWH A;  4BQT A;  5IUX A;  4D01 A;  3UQ7 A;  2ZJV A;  3P50 A;  4QAB A;  5J0Z A;  2WZY A;  5HCM A;  5L47 A;  3ZKR A;  3U8K A;  4AFG A;  3TLS A;  3UQ4 A;  2VL0 A;  3WTJ A;  5J5F A;  2Y56 A;  3RQW A;  4COF A;  3JAE A;  2YKS A;  4UM3 P;  3WTI A;  2XQ5 A;  5AFH A;  5AIN A;  4IL4 A;  4QH5 A;  2XZ6 A;  5LXB A;  3WIP A;  4UM3 A;  4WV9 A;  2XQ7 A;  5KE4 A;  2XYT A;  4HQP A;  3SQ9 A;  2XNT A;  4TNV A;  2Y57 A;  2PH9 A;  3U8L A;  4ILA A;  3TLU A;  2QC1 B;  4ZZC A;  3U8N A;  2XNV A;  5AFM B;  5HCJ A;  5BW2 A;  1I9B A;  3IGQ A;  4UM3 S;  4LML A;  2XQ8 A;  3UU5 A;  3T4M A;  5AFM A;  2XZ5 A;  4XK9 A;  4NPP A;  4PIR A;  2BYR A;  1UV6 A;  5HEH A;  3UUB A;  4X5T A;  4QH4 A;  4FRR A;  3TLW A;  2XQ9 A;  2UZ6 A;  2BG9 C;  2BJ0 A;  3EAM A;  4QAC A;  5KZU A;  2WNJ A;  5L4H A;  4QAA A;  2XYS A;  2YN6 A;  5J5G A;  3TLT A;  2X00 D;  5AFK A;  2BR7 A;  4ILC A;  5CFB A;  3RIF A;  5JME A;  3LSV A;  2BYP A;  5J5H A;  1UW6 A;  2YME A;  2BG9 A;  3EI0 A;  4HFC A;  2WN9 A;  4IL9 A;  5AFL A;  5L4E A;  2PGZ A;  4ZR6 A;  4ZZB A;  2ZJU A;  5LG3 A;  3JAD A;  3EHZ A;  2BYQ A;  4HFD A;  5CO5 A;  5AFN A;  3C79 A;  2WNL A;  4HFH A;  3RI5 A;  3UU3 A;  4LMJ A;  4DBM A;  3PEO A;  3SIO A;  4F8H A;  3UU4 A;  4XHE A;  4HFI A;  4ZRU A;  3WTN A;  3ZDG A;  3WTH A;  4ZJT A;  4HFE A;  3WTO A;  4LMK A;  5BP0 A;  2W8F A;  3U8J A;  5HEG A;  3UU6 A;  3C84 A;  3WTK A;  4Z90 A;  2BYN A;  4Z91 A;  5HEU A;  1UX2 A;  2XQ3 A;  2X00 A; 
#chains in the Genus database with same CATH topology
 4UXU A;  2BYS A;  2XQA A;  2YOE A;  3JAF A;  3P4W A;  4IRE A;  2YMD A;  4UM1 A;  3RQU A;  2BR8 A;  4ZK4 A;  4AFH A;  4TNW A;  4ILB A;  2Y7Y A;  4AFT A;  5SYO A;  4NZB A;  3WTM A;  2C9T A;  2Y58 A;  3TLV A;  2WNC A;  2XQ6 A;  3RHW A;  4A98 A;  4ZJS A;  2BG9 E;  4ALX A;  4EZ1 A;  5HEO A;  4UY2 A;  2Y54 A;  3UU8 A;  3SH1 A;  5TVC A;  4QH1 A;  3WTL A;  3U8M A;  4HFB A;  5HEJ A;  3RIA A;  5J5I A;  5AFJ A;  3SQ6 A;  4B5D A;  2XNU A;  2W8G A;  5FJV A;  4TWD A;  4A97 A;  5BRX A;  4TWF A;  3ZDH A;  3PMZ A;  4ZK1 A;  2XQ4 A;  3GUA A;  2BG9 B;  4BFQ A;  4TWH A;  4BQT A;  5IUX A;  4D01 A;  3UQ7 A;  2ZJV A;  3P50 A;  4QAB A;  5J0Z A;  2WZY A;  5HCM A;  5L47 A;  3ZKR A;  3U8K A;  4AFG A;  3TLS A;  3UQ4 A;  2VL0 A;  3WTJ A;  5J5F A;  2Y56 A;  3RQW A;  4COF A;  3JAE A;  2YKS A;  4UM3 P;  3WTI A;  2XQ5 A;  5AFH A;  5AIN A;  4IL4 A;  4QH5 A;  2XZ6 A;  5LXB A;  3WIP A;  4UM3 A;  4WV9 A;  2XQ7 A;  5KE4 A;  2XYT A;  4HQP A;  3SQ9 A;  2XNT A;  4TNV A;  2Y57 A;  2PH9 A;  3U8L A;  4ILA A;  3TLU A;  2QC1 B;  4ZZC A;  3U8N A;  2XNV A;  5AFM B;  5HCJ A;  5BW2 A;  1I9B A;  3IGQ A;  4UM3 S;  4LML A;  2XQ8 A;  3UU5 A;  3T4M A;  5AFM A;  2XZ5 A;  4XK9 A;  4NPP A;  4PIR A;  2BYR A;  1UV6 A;  5HEH A;  3UUB A;  4X5T A;  4QH4 A;  4FRR A;  3TLW A;  2XQ9 A;  2UZ6 A;  2BG9 C;  2BJ0 A;  3EAM A;  4QAC A;  5KZU A;  2WNJ A;  5L4H A;  4QAA A;  2XYS A;  2YN6 A;  5J5G A;  3TLT A;  2X00 D;  5AFK A;  2BR7 A;  4ILC A;  5CFB A;  3RIF A;  5JME A;  3LSV A;  2BYP A;  5J5H A;  1UW6 A;  2YME A;  2BG9 A;  3EI0 A;  4HFC A;  2WN9 A;  4IL9 A;  5AFL A;  5L4E A;  2PGZ A;  4ZR6 A;  4ZZB A;  2ZJU A;  5LG3 A;  3JAD A;  3EHZ A;  2BYQ A;  4HFD A;  5CO5 A;  5AFN A;  3C79 A;  2WNL A;  4HFH A;  3RI5 A;  3UU3 A;  4LMJ A;  4DBM A;  3PEO A;  3SIO A;  4F8H A;  3UU4 A;  4XHE A;  4HFI A;  4ZRU A;  3WTN A;  3ZDG A;  3WTH A;  4ZJT A;  4HFE A;  3WTO A;  4LMK A;  5BP0 A;  2W8F A;  3U8J A;  5HEG A;  3UU6 A;  3C84 A;  3WTK A;  4Z90 A;  2BYN A;  4Z91 A;  5HEU A;  1UX2 A;  2XQ3 A;  2X00 A; 
#chains in the Genus database with same CATH homology
 4UXU A;  2BYS A;  2XQA A;  2YOE A;  3JAF A;  3P4W A;  4IRE A;  2YMD A;  4UM1 A;  3RQU A;  2BR8 A;  4ZK4 A;  4AFH A;  4TNW A;  4ILB A;  2Y7Y A;  4AFT A;  5SYO A;  4NZB A;  3WTM A;  2C9T A;  2Y58 A;  3TLV A;  2WNC A;  2XQ6 A;  3RHW A;  4A98 A;  4ZJS A;  2BG9 E;  4ALX A;  4EZ1 A;  5HEO A;  4UY2 A;  2Y54 A;  3UU8 A;  3SH1 A;  5TVC A;  4QH1 A;  3WTL A;  3U8M A;  4HFB A;  5HEJ A;  3RIA A;  5J5I A;  5AFJ A;  3SQ6 A;  4B5D A;  2XNU A;  2W8G A;  5FJV A;  4TWD A;  4A97 A;  5BRX A;  4TWF A;  3ZDH A;  3PMZ A;  4ZK1 A;  2XQ4 A;  3GUA A;  2BG9 B;  4BFQ A;  4TWH A;  4BQT A;  5IUX A;  4D01 A;  3UQ7 A;  2ZJV A;  3P50 A;  4QAB A;  5J0Z A;  2WZY A;  5HCM A;  5L47 A;  3ZKR A;  3U8K A;  4AFG A;  3TLS A;  3UQ4 A;  2VL0 A;  3WTJ A;  5J5F A;  2Y56 A;  3RQW A;  4COF A;  3JAE A;  2YKS A;  4UM3 P;  3WTI A;  2XQ5 A;  5AFH A;  5AIN A;  4IL4 A;  4QH5 A;  2XZ6 A;  5LXB A;  3WIP A;  4UM3 A;  4WV9 A;  2XQ7 A;  5KE4 A;  2XYT A;  4HQP A;  3SQ9 A;  2XNT A;  4TNV A;  2Y57 A;  2PH9 A;  3U8L A;  4ILA A;  3TLU A;  2QC1 B;  4ZZC A;  3U8N A;  2XNV A;  5AFM B;  5HCJ A;  5BW2 A;  1I9B A;  3IGQ A;  4UM3 S;  4LML A;  2XQ8 A;  3UU5 A;  3T4M A;  5AFM A;  2XZ5 A;  4XK9 A;  4NPP A;  4PIR A;  2BYR A;  1UV6 A;  5HEH A;  3UUB A;  4X5T A;  4QH4 A;  4FRR A;  3TLW A;  2XQ9 A;  2UZ6 A;  2BG9 C;  2BJ0 A;  3EAM A;  4QAC A;  5KZU A;  2WNJ A;  5L4H A;  4QAA A;  2XYS A;  2YN6 A;  5J5G A;  3TLT A;  2X00 D;  5AFK A;  2BR7 A;  4ILC A;  5CFB A;  3RIF A;  5JME A;  3LSV A;  2BYP A;  5J5H A;  1UW6 A;  2YME A;  2BG9 A;  3EI0 A;  4HFC A;  2WN9 A;  4IL9 A;  5AFL A;  5L4E A;  2PGZ A;  4ZR6 A;  4ZZB A;  2ZJU A;  5LG3 A;  3JAD A;  3EHZ A;  2BYQ A;  4HFD A;  5CO5 A;  5AFN A;  3C79 A;  2WNL A;  4HFH A;  3RI5 A;  3UU3 A;  4LMJ A;  4DBM A;  3PEO A;  3SIO A;  4F8H A;  3UU4 A;  4XHE A;  4HFI A;  4ZRU A;  3WTN A;  3ZDG A;  3WTH A;  4ZJT A;  4HFE A;  3WTO A;  4LMK A;  5BP0 A;  2W8F A;  3U8J A;  5HEG A;  3UU6 A;  3C84 A;  3WTK A;  4Z90 A;  2BYN A;  4Z91 A;  5HEU A;  1UX2 A;  2XQ3 A;  2X00 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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