4DDNA

Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
154
structure length
154
Chain Sequence
MALQLAAHSDARSGPVGSNGGQFWSFRPVRPLNKIVLSFSGSPDQTLNLISITFSSNPTDIITVGGVGPEPLTYTETVNIDGDIIEISGMIANYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAYYTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Ipomoelin
publication title Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus.
pubmed doi rcsb
source organism Ipomoea batatas
total genus 26
structure length 154
sequence length 154
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4ddnA00
2GTYA 1J4UA 3LLZA 4R6RA 1X1VA 2GUXA 1KU8A 1OUWA 4R6NA 3R52A 1J4TA 1ZGRA 1WS4A 5J50A 3VZFA 5J4TA 3VZEA 5JM1A 3MIUA 1XEZA 1J4SA 3VY7A 1UGYC 4AK4A 1XXRA 3MIVA 3P8SA 1WS5A 4PIUA 2BN0A 3LL1A 1TP8A 3O44A 4WOGA 2GUCA 4AKCA 1KUJA 4DDNA 4PIFA 4R6PA 4AKDA 2JZ4A 2GUDA 2GUEA 3APAA 4MQ0A 5AV7A 4GX7A 2HYRA 5EXGA 3LLYA 4PITA 3WOBA 4R6OA 3VY6A 1VBPA 3R50A 1C3KA 4PIKA 1M26A 1ZGSA 3R51A 1TOQA 2NUOA 1JOTA 1UH0A 1UGWA 2HYQA 2NU5A 1WS4C 3MITA 1UGXA 3LM1A 3AQGA 1PXDA 3LL2A 3WOCA 1JACA 4R6QA 1C3NA 3VZGA 1VBOA 2BMYA 5J51A 1WS5C 5BN6E 1XXQA 3LL0A 5J4XA 1UH1A 4AKBA 1C3MA 2BMZA 1UGYA 3LKYA 1UGWC
chains in the Genus database with same CATH superfamily
2GTYA 1J4UA 2QP2A 3LLZA 4R6RA 4ARXA 1X1VA 2GUXA 1KU8A 4QX0A 1OUWA 3TOWA 4R6NA 1DLCA 3R52A 4D8MA 1J4TA 1ZGRA 1WS4A 5J50A 3VZFA 5J4TA 3VZEA 1VMOA 1I5PA 5JM1A 3MIUA 4QX1A 1XEZA 1J4SA 3VY7A 1UGYC 4AK4A 1XXRA 3MIVA 3P8SA 1WS5A 4PIUA 2BN0A 1UGWC 3LL1A 1TP8A 3O44A 4WOGA 2GUCA 4AKCA 1KUJA 1W99A 4DDNA 4PIFA 4R6PA 4AKDA 2JZ4A 2GUDA 2GUEA 3EB7A 1JI6A 3APAA 4MQ0A 5AV7A 4GX7A 2HYRA 5EXGA 3LLYA 4PITA 3WOBA 4QX2A 4R6OA 3VY6A 4MOAA 1VBPA 3R50A 1C3KA 4QX3A 4ARYA 4PIKA 1M26A 1ZGSA 3R51A 1CIYA 1TOQA 1JOTA 1UH0A 1UGWA 2HYQA 2NU5A 1WS4C 2C9KA 1UGXA 3MITA 3LM1A 3AQGA 1PXDA 3LL2A 3WOCA 1JACA 4R6QA 1C3NA 3VZGA 1VBOA 2BMYA 5J51A 1WS5C 5BN6E 1XXQA 3LL0A 5J4XA 1UH1A 4W8JA 4AKBA 1C3MA 2BMZA 1UGYA 3LKYA 2NUOA
chains in the Genus database with same CATH topology
2GTYA 1J4UA 3LLZA 4R6RA 1X1VA 2GUXA 1KU8A 1OUWA 4R6NA 3R52A 1J4TA 1ZGRA 1WS4A 5J50A 3VZFA 5J4TA 3VZEA 5JM1A 3MIUA 1XEZA 1J4SA 3VY7A 1UGYC 4AK4A 1XXRA 3MIVA 3P8SA 1WS5A 4PIUA 2BN0A 3LL1A 1TP8A 3O44A 4WOGA 2GUCA 4AKCA 1KUJA 4DDNA 4PIFA 4R6PA 4AKDA 2JZ4A 2GUDA 2GUEA 3APAA 4MQ0A 5AV7A 4GX7A 2HYRA 5EXGA 3LLYA 4PITA 3WOBA 4R6OA 3VY6A 1VBPA 3R50A 1C3KA 4PIKA 1M26A 1ZGSA 3R51A 1TOQA 2NUOA 1JOTA 1UH0A 1UGWA 2HYQA 2NU5A 1WS4C 3MITA 1UGXA 3LM1A 3AQGA 1PXDA 3LL2A 3WOCA 1JACA 4R6QA 1C3NA 3VZGA 1VBOA 2BMYA 5J51A 1WS5C 5BN6E 1XXQA 3LL0A 5J4XA 1UH1A 4AKBA 1C3MA 2BMZA 1UGYA 3LKYA 1UGWC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GTY A;  1J4U A;  3LLZ A;  4R6R A;  1X1V A;  2GUX A;  1KU8 A;  1OUW A;  4R6N A;  3R52 A;  1J4T A;  1ZGR A;  1WS4 A;  5J50 A;  3VZF A;  5J4T A;  3VZE A;  5JM1 A;  3MIU A;  1XEZ A;  1J4S A;  3VY7 A;  1UGY C;  4AK4 A;  1XXR A;  3MIV A;  3P8S A;  1WS5 A;  4PIU A;  2BN0 A;  3LL1 A;  1TP8 A;  3O44 A;  4WOG A;  2GUC A;  4AKC A;  1KUJ A;  4DDN A;  4PIF A;  4R6P A;  4AKD A;  2JZ4 A;  2GUD A;  2GUE A;  3APA A;  4MQ0 A;  5AV7 A;  4GX7 A;  2HYR A;  5EXG A;  3LLY A;  4PIT A;  3WOB A;  4R6O A;  3VY6 A;  1VBP A;  3R50 A;  1C3K A;  4PIK A;  1M26 A;  1ZGS A;  3R51 A;  1TOQ A;  2NUO A;  1JOT A;  1UH0 A;  1UGW A;  2HYQ A;  2NU5 A;  1WS4 C;  3MIT A;  1UGX A;  3LM1 A;  3AQG A;  1PXD A;  3LL2 A;  3WOC A;  1JAC A;  4R6Q A;  1C3N A;  3VZG A;  1VBO A;  2BMY A;  5J51 A;  1WS5 C;  5BN6 E;  1XXQ A;  3LL0 A;  5J4X A;  1UH1 A;  4AKB A;  1C3M A;  2BMZ A;  1UGY A;  3LKY A;  1UGW C; 
#chains in the Genus database with same CATH topology
 2GTY A;  1J4U A;  2QP2 A;  3LLZ A;  4R6R A;  4ARX A;  1X1V A;  2GUX A;  1KU8 A;  4QX0 A;  1OUW A;  3TOW A;  4R6N A;  1DLC A;  3R52 A;  4D8M A;  1J4T A;  1ZGR A;  1WS4 A;  5J50 A;  3VZF A;  5J4T A;  3VZE A;  1VMO A;  1I5P A;  5JM1 A;  3MIU A;  4QX1 A;  1XEZ A;  1J4S A;  3VY7 A;  1UGY C;  4AK4 A;  1XXR A;  3MIV A;  3P8S A;  1WS5 A;  4PIU A;  2BN0 A;  1UGW C;  3LL1 A;  1TP8 A;  3O44 A;  4WOG A;  2GUC A;  4AKC A;  1KUJ A;  1W99 A;  4DDN A;  4PIF A;  4R6P A;  4AKD A;  2JZ4 A;  2GUD A;  2GUE A;  3EB7 A;  1JI6 A;  3APA A;  4MQ0 A;  5AV7 A;  4GX7 A;  2HYR A;  5EXG A;  3LLY A;  4PIT A;  3WOB A;  4QX2 A;  4R6O A;  3VY6 A;  4MOA A;  1VBP A;  3R50 A;  1C3K A;  4QX3 A;  4ARY A;  4PIK A;  1M26 A;  1ZGS A;  3R51 A;  1CIY A;  1TOQ A;  1JOT A;  1UH0 A;  1UGW A;  2HYQ A;  2NU5 A;  1WS4 C;  2C9K A;  1UGX A;  3MIT A;  3LM1 A;  3AQG A;  1PXD A;  3LL2 A;  3WOC A;  1JAC A;  4R6Q A;  1C3N A;  3VZG A;  1VBO A;  2BMY A;  5J51 A;  1WS5 C;  5BN6 E;  1XXQ A;  3LL0 A;  5J4X A;  1UH1 A;  4W8J A;  4AKB A;  1C3M A;  2BMZ A;  1UGY A;  3LKY A;  2NUO A; 
#chains in the Genus database with same CATH homology
 2GTY A;  1J4U A;  3LLZ A;  4R6R A;  1X1V A;  2GUX A;  1KU8 A;  1OUW A;  4R6N A;  3R52 A;  1J4T A;  1ZGR A;  1WS4 A;  5J50 A;  3VZF A;  5J4T A;  3VZE A;  5JM1 A;  3MIU A;  1XEZ A;  1J4S A;  3VY7 A;  1UGY C;  4AK4 A;  1XXR A;  3MIV A;  3P8S A;  1WS5 A;  4PIU A;  2BN0 A;  3LL1 A;  1TP8 A;  3O44 A;  4WOG A;  2GUC A;  4AKC A;  1KUJ A;  4DDN A;  4PIF A;  4R6P A;  4AKD A;  2JZ4 A;  2GUD A;  2GUE A;  3APA A;  4MQ0 A;  5AV7 A;  4GX7 A;  2HYR A;  5EXG A;  3LLY A;  4PIT A;  3WOB A;  4R6O A;  3VY6 A;  1VBP A;  3R50 A;  1C3K A;  4PIK A;  1M26 A;  1ZGS A;  3R51 A;  1TOQ A;  2NUO A;  1JOT A;  1UH0 A;  1UGW A;  2HYQ A;  2NU5 A;  1WS4 C;  3MIT A;  1UGX A;  3LM1 A;  3AQG A;  1PXD A;  3LL2 A;  3WOC A;  1JAC A;  4R6Q A;  1C3N A;  3VZG A;  1VBO A;  2BMY A;  5J51 A;  1WS5 C;  5BN6 E;  1XXQ A;  3LL0 A;  5J4X A;  1UH1 A;  4AKB A;  1C3M A;  2BMZ A;  1UGY A;  3LKY A;  1UGW C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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