4DFCB

Core uvra/trcf complex
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
123
structure length
121
Chain Sequence
MASTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna binding protein
molecule keywords Transcription-repair-coupling factor
publication title Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface.
pubmed doi rcsb
source organism Escherichia coli
total genus 26
structure length 121
sequence length 123
chains with identical sequence D
ec nomenclature ec 3.6.1.3: Adenosinetriphosphatase.
pdb deposition date 2012-01-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.20 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase 4dfcB00
1ZHOA 4F9TA 3QOYA 3TG8A 1CJSA 1MZPA 3FPNA 1AD2A 5DM60 1DWUA 4QVIA 1I2AA 5DM70 3U4MA 4LQ4A 4QGBA 4QG3A 3U56A 2HW8A 4REOA 3UMYA 4DFCB 3ZQJA 1U63A
chains in the Genus database with same CATH superfamily
2DFXI 1RCOC 1RBLI 1SVDM 2V63I 1UZHC 1ZHOA 4F9TA 1RLDS 3QOYA 1RBOC 2V67I 3TG8A 1RSCI 4HHHS 2VDII 1UPMC 4F0HB 8RUCI 1AUSS 1RCXC 1IWAB 1EJ7S 1IR21 1IR1S 1GK8I 2V68I 2YBVB 1UW9C 1CJSA 4MKVS 1MZPA 1AD2A 5DM60 2V69I 1UWAC 1DWUA 1I2AA 4F0KB 5DM70 1BWVS 2VDHI 4LQ4A 4QGBA 1RLCS 4QVIA 3U4MA 4RUBS 1UZDC 1WDDS 4QG3A 4F0MB 1BXNI 1UPPI 3ZXWB 3U56A 3AXKS 1AA1C 1RXOC 3ZQJA 2V6AI 3AXMS 4REOA 3UMYA 2HW8A 3RUBS 3FPNA 2FHZA 4DFCB 1U63A
chains in the Genus database with same CATH topology
2DFXI 1ZHOA 4F9TA 3QOYA 3TG8A 1CJSA 1MZPA 3FPNA 1AD2A 5DM60 5DM70 4QVIA 1DWUA 1I2AA 3U4MA 4LQ4A 4QGBA 4QG3A 3U56A 2HW8A 4REOA 3UMYA 4DFCB 3ZQJA 2FHZA 1U63A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZHO A;  4F9T A;  3QOY A;  3TG8 A;  1CJS A;  1MZP A;  3FPN A;  1AD2 A;  5DM6 0;  1DWU A;  4QVI A;  1I2A A;  5DM7 0;  3U4M A;  4LQ4 A;  4QGB A;  4QG3 A;  3U56 A;  2HW8 A;  4REO A;  3UMY A;  4DFC B;  3ZQJ A;  1U63 A; 
#chains in the Genus database with same CATH topology
 2DFX I;  1RCO C;  1RBL I;  1SVD M;  2V63 I;  1UZH C;  1ZHO A;  4F9T A;  1RLD S;  3QOY A;  1RBO C;  2V67 I;  3TG8 A;  1RSC I;  4HHH S;  2VDI I;  1UPM C;  4F0H B;  8RUC I;  1AUS S;  1RCX C;  1IWA B;  1EJ7 S;  1IR2 1;  1IR1 S;  1GK8 I;  2V68 I;  2YBV B;  1UW9 C;  1CJS A;  4MKV S;  1MZP A;  1AD2 A;  5DM6 0;  2V69 I;  1UWA C;  1DWU A;  1I2A A;  4F0K B;  5DM7 0;  1BWV S;  2VDH I;  4LQ4 A;  4QGB A;  1RLC S;  4QVI A;  3U4M A;  4RUB S;  1UZD C;  1WDD S;  4QG3 A;  4F0M B;  1BXN I;  1UPP I;  3ZXW B;  3U56 A;  3AXK S;  1AA1 C;  1RXO C;  3ZQJ A;  2V6A I;  3AXM S;  4REO A;  3UMY A;  2HW8 A;  3RUB S;  3FPN A;  2FHZ A;  4DFC B;  1U63 A; 
#chains in the Genus database with same CATH homology
 2DFX I;  1ZHO A;  4F9T A;  3QOY A;  3TG8 A;  1CJS A;  1MZP A;  3FPN A;  1AD2 A;  5DM6 0;  5DM7 0;  4QVI A;  1DWU A;  1I2A A;  3U4M A;  4LQ4 A;  4QGB A;  4QG3 A;  3U56 A;  2HW8 A;  4REO A;  3UMY A;  4DFC B;  3ZQJ A;  2FHZ A;  1U63 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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