4DOYA

Crystal structure of dibenzothiophene desulfurization enzyme c
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
400
structure length
400
Chain Sequence
NDPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of DszC from Rhodococcus sp. XP at 1.79 angstrom
pubmed doi rcsb
source organism Rhodococcus
molecule tags Oxidoreductase
molecule keywords Dibenzothiophene desulfurization enzyme C
total genus 147
structure length 400
sequence length 400
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 1.14.14.1: Unspecific monooxygenase.
pdb deposition date 2012-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
A PF08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4doyA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4doyA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4doyA02
3MMOA 4HR3A 2E81A 2YYJA 1WS9A 2C0UA 3OIBA 4KCFA 3LGQA 3MPIA 2VR0A 3II9A 3MDDA 3L1TA 1GU6A 1IVHA 4Q5BA 3D9DA 3PFDA 1R2JA 4IRNA 3D6BA 3SWOA 4L1FA 4WJYA 2VIGA 3EONA 3BNGA 3D9GA 4Q5CA 4Q17A 3TORA 3GNCA 2E80A 1T9GA 3GM6A 1SIQA 3SF6A 4Q4UA 2IX6A 3D1IA 3GQTA 4G5EA 2YYIA 2CX9A 2YYGA 1IS2A 4N5FA 4RM7A 5K3GA 3D9EA 3AFFA 3EOMA 5K3HA 3MXLA 3MPJA 4P13A 3HWCA 3MDEA 3OWMA 1RX0A 3M9VA 2ZAFA 4OO2A 2REHA 1EGDA 3X0XA 2OR0A 4DOYA 4JEKA 2RDZA 3X0YA 1EGCA 4O5MA 3LG1A 4Q0TA 5K3IA 2EBAA 5K3JA 3FO3A 3SCEA 3BNHA 2D29A 4ZXVA 2RFQA 4XVXA 2OT4A 3F29A 2JBRA 2PG0A 2UXWA 4IV6A 3R7KA 4M9AA 3TTBA 3AFEA 2RF7A 1BUCA 2FONA 2JBSA 2JBTA 2JIFA 4L38A 2YYLA 1FS9A 2IX5A 4U83A 4NXLA 2WBIA 1UKWA 4KTOA 3BNFA 3NF4A 4ZYJA 4W9UA 4L3ZA 1OAHA 4X28A 3D9FA 3UU9A 2R0MA 3OWAA 2DVLA 3BNJA 2R0NA 3P4TA 4Q1OA 3B96A 3S7WA 2DDHA 2A1TA 3RKHA 3FCJA 2YYKA 1U8VA 1W07A 4L3YA 1FS7A 2C12A 1FS8A 1UDYA 2YYMA 2ZO5A 2J7AA 1QDBA 1EGEA 1JQIA 3MKHA 4L3XA 3SXQA 1SIRA 3UBRA 4X28C 2Z1QA
chains in the Genus database with same CATH superfamily
2PNRA 3MMOA 1PK0A 4HR3A 2E81A 2ZKJA 1XG2B 2YYJA 4MPNA 1WS9A 2C0UA 1LVCA 3OIBA 4KCFA 3LGQA 2OEVA 4J1VA 1X8ZA 1SC5A 3MPIA 4FF4A 2VR0A 3II9A 1XFZA 3MDDA 3L1TA 4G97A 1GU6A 4H85A 3X29A 5B5VA 2Q8IA 1IVHA 5BRKA 1PI1A 4Q5BA 2OJQA 4H7QA 3D9DA 3PFDA 1R2JA 1K8TA 3Q22A 4IRNA 4LQSB 2EBHX 2R02A 2BTZA 3D6BA 3SWOA 4L1FA 4WJYA 2BU2A 5EZ3A 2VIGA 3EONA 3BNGA 3Q0AA 3D9GA 4Q5CA 2R03A 4Q17A 3TORA 3GNCA 2E80A 1X91A 5BRMA 1T9GA 3GM6A 4MP2A 2GBBA 1SIQA 3KMLA 3DJLA 2ZDXA 4H81A 3SF6A 4Q4UA 2IX6A 3D1IA 1Y0VA 5J71A 3Q23A 3GQTA 2HJNA 4G5EA 2Q8FA 2YYIA 3N0RA 2CX9A 1X90A 2YYGA 1XFVA 2Q8GA 1RP3A 4AKGA 1IS2A 4N5FA 5B5WA 4RM7A 5K3GA 3D9EA 3AFFA 3EOMA 5K3HA 3MXLA 3MPJA 4P13A 2EBFX 2VF1A 3MDEA 1GKXA 3OWMA 2FP2A 2CJ7A 5M4MA 3TZ4A 1RX0A 3CRLA 5M4KA 3M9VA 4FF2A 2XS1A 2ZAFA 1JM6A 2CJ8A 4OO2A 1Y8NA 4E02A 2BU7A 4F0XA 4MPEA 2REHA 5GJVE 5B6BA 5J6AA 1EGDA 3X0XA 2R05A 2OR0A 4DOYA 2Q8HA 3U33A 4JEKA 2RDZA 3X0YA 4FZ4A 1EGCA 2CJ5A 4O5MA 1K90A 2BU6A 3LG1A 4Q0TA 3CE2A 4QICA 5K3IA 2EBAA 5K3JA 4HKSA 1XFXA 3FO3A 3SCEA 4JIZA 3BNHA 2D29A 2EC5A 1SK6A 4ZXVA 2FP1A 4P79A 2RFQA 4XVXA 2OT4A 3F29A 2YGWA 2JBRA 3C3LA 2PG0A 3VADA 4FF1A 2UXWA 4IV6A 3R7KA 4M9AA 4FF3A 4DZYA 4E01A 3Q24A 4MP7A 4KS9A 2CJ6A 2AZEA 3TTBA 5M4NA 3AFEA 2RF7A 1BUCA 1K93A 1R3BA 2FONA 2JBSA 2JBTA 2JIFA 4L38A 2YYLA 3C46A 1FS9A 2BU5A 2IX5A 4V26A 4U83A 4NXLA 2ZDYA 2WBIA 4KSFA 1UKWA 4MPCA 4KTOA 3VKHA 1GKZA 3BNFA 1RJ4A 3D2RA 3TZ5A 3VKGA 3NF4A 1Y8PA 4ZYJA 4W9UA 1XFUA 1OAHA 2CJ4A 4L3ZA 5M4PA 4X28A 1XFYA 4V25A 1RJ1A 3D9FA 2QR4A 3UU9A 2R0MA 3OWAA 2DVLA 2OEXA 3BNJA 3HWCA 2R0NA 3TZ2A 3P4TA 2XQRB 4Q1OA 3B96A 3CRKA 4E00A 3S7WA 2DDHA 2A1TA 3RKHA 3FCJA 2YYKA 5GJWE 4AKIA 2F6LA 1U8VA 1W07A 4L3YA 1FS7A 2AO2A 2PO4A 4KSAA 2XS8A 2C12A 4HKRA 1FS8A 1UDYA 1S26A 2YYMA 2ZO5A 1GJVA 4JIOA 2J7AA 4AKHA 2LFWA 1QDBA 1EGEA 2BU8A 4LQQB 2E0AA 1JQIA 3MKHA 4L3XA 3TZ0A 3SXQA 1SIRA 1XFWA 3UBRA 3C2PA 4X28C 2Z1QA 1Y8OA 4AI6A
chains in the Genus database with same CATH topology
3MMOA 4HR3A 2E81A 2YYJA 1WS9A 2C0UA 3OIBA 4KCFA 3LGQA 3MPIA 2VR0A 3II9A 3MDDA 3L1TA 1GU6A 1IVHA 4Q5BA 3D9DA 3PFDA 1R2JA 4IRNA 3D6BA 3SWOA 4L1FA 4WJYA 2VIGA 3EONA 3BNGA 3D9GA 4Q5CA 4Q17A 3TORA 3GNCA 2E80A 1T9GA 3GM6A 1SIQA 3SF6A 4Q4UA 2IX6A 3D1IA 3GQTA 4G5EA 2YYIA 2CX9A 2YYGA 1IS2A 4N5FA 4RM7A 5K3GA 3D9EA 3AFFA 3EOMA 5K3HA 3MXLA 3MPJA 4P13A 3HWCA 3MDEA 3OWMA 1RX0A 3M9VA 2ZAFA 4OO2A 2REHA 1EGDA 3X0XA 2OR0A 4DOYA 4JEKA 2RDZA 3X0YA 1EGCA 4O5MA 3LG1A 4Q0TA 5K3IA 2EBAA 5K3JA 3FO3A 3SCEA 3BNHA 2D29A 4ZXVA 2RFQA 4XVXA 2OT4A 3F29A 2JBRA 2PG0A 2UXWA 4IV6A 3R7KA 4M9AA 3TTBA 3AFEA 2RF7A 1BUCA 2FONA 2JBSA 2JBTA 2JIFA 4L38A 2YYLA 1FS9A 2IX5A 4U83A 4NXLA 2WBIA 1UKWA 4KTOA 3BNFA 3NF4A 4ZYJA 4W9UA 4L3ZA 1OAHA 4X28A 3D9FA 3UU9A 2R0MA 3OWAA 2DVLA 3BNJA 2R0NA 3P4TA 4Q1OA 3B96A 3S7WA 2DDHA 2A1TA 3RKHA 3FCJA 2YYKA 1U8VA 1W07A 4L3YA 1FS7A 2C12A 1FS8A 1UDYA 2YYMA 2ZO5A 2J7AA 1QDBA 1EGEA 1JQIA 3MKHA 4L3XA 3SXQA 1SIRA 3UBRA 4X28C 2Z1QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MMO A;  4HR3 A;  2E81 A;  2YYJ A;  1WS9 A;  2C0U A;  3OIB A;  4KCF A;  3LGQ A;  3MPI A;  2VR0 A;  3II9 A;  3MDD A;  3L1T A;  1GU6 A;  1IVH A;  4Q5B A;  3D9D A;  3PFD A;  1R2J A;  4IRN A;  3D6B A;  3SWO A;  4L1F A;  4WJY A;  2VIG A;  3EON A;  3BNG A;  3D9G A;  4Q5C A;  4Q17 A;  3TOR A;  3GNC A;  2E80 A;  1T9G A;  3GM6 A;  1SIQ A;  3SF6 A;  4Q4U A;  2IX6 A;  3D1I A;  3GQT A;  4G5E A;  2YYI A;  2CX9 A;  2YYG A;  1IS2 A;  4N5F A;  4RM7 A;  5K3G A;  3D9E A;  3AFF A;  3EOM A;  5K3H A;  3MXL A;  3MPJ A;  4P13 A;  3HWC A;  3MDE A;  3OWM A;  1RX0 A;  3M9V A;  2ZAF A;  4OO2 A;  2REH A;  1EGD A;  3X0X A;  2OR0 A;  4DOY A;  4JEK A;  2RDZ A;  3X0Y A;  1EGC A;  4O5M A;  3LG1 A;  4Q0T A;  5K3I A;  2EBA A;  5K3J A;  3FO3 A;  3SCE A;  3BNH A;  2D29 A;  4ZXV A;  2RFQ A;  4XVX A;  2OT4 A;  3F29 A;  2JBR A;  2PG0 A;  2UXW A;  4IV6 A;  3R7K A;  4M9A A;  3TTB A;  3AFE A;  2RF7 A;  1BUC A;  2FON A;  2JBS A;  2JBT A;  2JIF A;  4L38 A;  2YYL A;  1FS9 A;  2IX5 A;  4U83 A;  4NXL A;  2WBI A;  1UKW A;  4KTO A;  3BNF A;  3NF4 A;  4ZYJ A;  4W9U A;  4L3Z A;  1OAH A;  4X28 A;  3D9F A;  3UU9 A;  2R0M A;  3OWA A;  2DVL A;  3BNJ A;  2R0N A;  3P4T A;  4Q1O A;  3B96 A;  3S7W A;  2DDH A;  2A1T A;  3RKH A;  3FCJ A;  2YYK A;  1U8V A;  1W07 A;  4L3Y A;  1FS7 A;  2C12 A;  1FS8 A;  1UDY A;  2YYM A;  2ZO5 A;  2J7A A;  1QDB A;  1EGE A;  1JQI A;  3MKH A;  4L3X A;  3SXQ A;  1SIR A;  3UBR A;  4X28 C;  2Z1Q A; 
#chains in the Genus database with same CATH topology
 2PNR A;  3MMO A;  1PK0 A;  4HR3 A;  2E81 A;  2ZKJ A;  1XG2 B;  2YYJ A;  4MPN A;  1WS9 A;  2C0U A;  1LVC A;  3OIB A;  4KCF A;  3LGQ A;  2OEV A;  4J1V A;  1X8Z A;  1SC5 A;  3MPI A;  4FF4 A;  2VR0 A;  3II9 A;  1XFZ A;  3MDD A;  3L1T A;  4G97 A;  1GU6 A;  4H85 A;  3X29 A;  5B5V A;  2Q8I A;  1IVH A;  5BRK A;  1PI1 A;  4Q5B A;  2OJQ A;  4H7Q A;  3D9D A;  3PFD A;  1R2J A;  1K8T A;  3Q22 A;  4IRN A;  4LQS B;  2EBH X;  2R02 A;  2BTZ A;  3D6B A;  3SWO A;  4L1F A;  4WJY A;  2BU2 A;  5EZ3 A;  2VIG A;  3EON A;  3BNG A;  3Q0A A;  3D9G A;  4Q5C A;  2R03 A;  4Q17 A;  3TOR A;  3GNC A;  2E80 A;  1X91 A;  5BRM A;  1T9G A;  3GM6 A;  4MP2 A;  2GBB A;  1SIQ A;  3KML A;  3DJL A;  2ZDX A;  4H81 A;  3SF6 A;  4Q4U A;  2IX6 A;  3D1I A;  1Y0V A;  5J71 A;  3Q23 A;  3GQT A;  2HJN A;  4G5E A;  2Q8F A;  2YYI A;  3N0R A;  2CX9 A;  1X90 A;  2YYG A;  1XFV A;  2Q8G A;  1RP3 A;  4AKG A;  1IS2 A;  4N5F A;  5B5W A;  4RM7 A;  5K3G A;  3D9E A;  3AFF A;  3EOM A;  5K3H A;  3MXL A;  3MPJ A;  4P13 A;  2EBF X;  2VF1 A;  3MDE A;  1GKX A;  3OWM A;  2FP2 A;  2CJ7 A;  5M4M A;  3TZ4 A;  1RX0 A;  3CRL A;  5M4K A;  3M9V A;  4FF2 A;  2XS1 A;  2ZAF A;  1JM6 A;  2CJ8 A;  4OO2 A;  1Y8N A;  4E02 A;  2BU7 A;  4F0X A;  4MPE A;  2REH A;  5GJV E;  5B6B A;  5J6A A;  1EGD A;  3X0X A;  2R05 A;  2OR0 A;  4DOY A;  2Q8H A;  3U33 A;  4JEK A;  2RDZ A;  3X0Y A;  4FZ4 A;  1EGC A;  2CJ5 A;  4O5M A;  1K90 A;  2BU6 A;  3LG1 A;  4Q0T A;  3CE2 A;  4QIC A;  5K3I A;  2EBA A;  5K3J A;  4HKS A;  1XFX A;  3FO3 A;  3SCE A;  4JIZ A;  3BNH A;  2D29 A;  2EC5 A;  1SK6 A;  4ZXV A;  2FP1 A;  4P79 A;  2RFQ A;  4XVX A;  2OT4 A;  3F29 A;  2YGW A;  2JBR A;  3C3L A;  2PG0 A;  3VAD A;  4FF1 A;  2UXW A;  4IV6 A;  3R7K A;  4M9A A;  4FF3 A;  4DZY A;  4E01 A;  3Q24 A;  4MP7 A;  4KS9 A;  2CJ6 A;  2AZE A;  3TTB A;  5M4N A;  3AFE A;  2RF7 A;  1BUC A;  1K93 A;  1R3B A;  2FON A;  2JBS A;  2JBT A;  2JIF A;  4L38 A;  2YYL A;  3C46 A;  1FS9 A;  2BU5 A;  2IX5 A;  4V26 A;  4U83 A;  4NXL A;  2ZDY A;  2WBI A;  4KSF A;  1UKW A;  4MPC A;  4KTO A;  3VKH A;  1GKZ A;  3BNF A;  1RJ4 A;  3D2R A;  3TZ5 A;  3VKG A;  3NF4 A;  1Y8P A;  4ZYJ A;  4W9U A;  1XFU A;  1OAH A;  2CJ4 A;  4L3Z A;  5M4P A;  4X28 A;  1XFY A;  4V25 A;  1RJ1 A;  3D9F A;  2QR4 A;  3UU9 A;  2R0M A;  3OWA A;  2DVL A;  2OEX A;  3BNJ A;  3HWC A;  2R0N A;  3TZ2 A;  3P4T A;  2XQR B;  4Q1O A;  3B96 A;  3CRK A;  4E00 A;  3S7W A;  2DDH A;  2A1T A;  3RKH A;  3FCJ A;  2YYK A;  5GJW E;  4AKI A;  2F6L A;  1U8V A;  1W07 A;  4L3Y A;  1FS7 A;  2AO2 A;  2PO4 A;  4KSA A;  2XS8 A;  2C12 A;  4HKR A;  1FS8 A;  1UDY A;  1S26 A;  2YYM A;  2ZO5 A;  1GJV A;  4JIO A;  2J7A A;  4AKH A;  2LFW A;  1QDB A;  1EGE A;  2BU8 A;  4LQQ B;  2E0A A;  1JQI A;  3MKH A;  4L3X A;  3TZ0 A;  3SXQ A;  1SIR A;  1XFW A;  3UBR A;  3C2P A;  4X28 C;  2Z1Q A;  1Y8O A;  4AI6 A; 
#chains in the Genus database with same CATH homology
 3MMO A;  4HR3 A;  2E81 A;  2YYJ A;  1WS9 A;  2C0U A;  3OIB A;  4KCF A;  3LGQ A;  3MPI A;  2VR0 A;  3II9 A;  3MDD A;  3L1T A;  1GU6 A;  1IVH A;  4Q5B A;  3D9D A;  3PFD A;  1R2J A;  4IRN A;  3D6B A;  3SWO A;  4L1F A;  4WJY A;  2VIG A;  3EON A;  3BNG A;  3D9G A;  4Q5C A;  4Q17 A;  3TOR A;  3GNC A;  2E80 A;  1T9G A;  3GM6 A;  1SIQ A;  3SF6 A;  4Q4U A;  2IX6 A;  3D1I A;  3GQT A;  4G5E A;  2YYI A;  2CX9 A;  2YYG A;  1IS2 A;  4N5F A;  4RM7 A;  5K3G A;  3D9E A;  3AFF A;  3EOM A;  5K3H A;  3MXL A;  3MPJ A;  4P13 A;  3HWC A;  3MDE A;  3OWM A;  1RX0 A;  3M9V A;  2ZAF A;  4OO2 A;  2REH A;  1EGD A;  3X0X A;  2OR0 A;  4DOY A;  4JEK A;  2RDZ A;  3X0Y A;  1EGC A;  4O5M A;  3LG1 A;  4Q0T A;  5K3I A;  2EBA A;  5K3J A;  3FO3 A;  3SCE A;  3BNH A;  2D29 A;  4ZXV A;  2RFQ A;  4XVX A;  2OT4 A;  3F29 A;  2JBR A;  2PG0 A;  2UXW A;  4IV6 A;  3R7K A;  4M9A A;  3TTB A;  3AFE A;  2RF7 A;  1BUC A;  2FON A;  2JBS A;  2JBT A;  2JIF A;  4L38 A;  2YYL A;  1FS9 A;  2IX5 A;  4U83 A;  4NXL A;  2WBI A;  1UKW A;  4KTO A;  3BNF A;  3NF4 A;  4ZYJ A;  4W9U A;  4L3Z A;  1OAH A;  4X28 A;  3D9F A;  3UU9 A;  2R0M A;  3OWA A;  2DVL A;  3BNJ A;  2R0N A;  3P4T A;  4Q1O A;  3B96 A;  3S7W A;  2DDH A;  2A1T A;  3RKH A;  3FCJ A;  2YYK A;  1U8V A;  1W07 A;  4L3Y A;  1FS7 A;  2C12 A;  1FS8 A;  1UDY A;  2YYM A;  2ZO5 A;  2J7A A;  1QDB A;  1EGE A;  1JQI A;  3MKH A;  4L3X A;  3SXQ A;  1SIR A;  3UBR A;  4X28 C;  2Z1Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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