4DSDA

Crystal structure of a putative periplasmic protein (bacova_05534) from bacteroides ovatus atcc 8483 at 1.75 a resolution
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
126
structure length
126
Chain Sequence
KDVITKDMNQLPLPARNFINSNFTKPQVAHIKIDKDMMESTKYEVVLMDGTEIDFDSKGNWEEVSAKKGQTVPVSIVPGFAVNYLKAHNFVNEGVTKVERDRKGYEIELSTGLSFKFDKKGKFIKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords putative periplasmic protein
publication title Crystal structure of a putative periplasmic protein (BACOVA_05534) from Bacteroides ovatus ATCC 8483 at 1.75 A resolution
rcsb
source organism Bacteroides ovatus
total genus 24
structure length 126
sequence length 126
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11396 PepSY_like Putative beta-lactamase-inhibitor-like, PepSY-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1420.30 Alpha Beta 3-Layer(aba) Sandwich Inhibitor of vertebrate lysozyme, Ivy Inhibitor of vertebrate lysozyme, Ivy 4dsdA00
3DUEA 3DB7A 4QOAA 4POIA 3ELGA 4DSDA
chains in the Genus database with same CATH superfamily
3CWXA 3CWYA 3DB7A 3DUEA 4QOAA 4POIA 4PS6A 1XS0A 3ELGA 1UUZA 4DSDA 1GPQA
chains in the Genus database with same CATH topology
3CWXA 3CWYA 3DB7A 3DUEA 4QOAA 4POIA 3ELGA 4DSDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DUE A;  3DB7 A;  4QOA A;  4POI A;  3ELG A;  4DSD A; 
#chains in the Genus database with same CATH topology
 3CWX A;  3CWY A;  3DB7 A;  3DUE A;  4QOA A;  4POI A;  4PS6 A;  1XS0 A;  3ELG A;  1UUZ A;  4DSD A;  1GPQ A; 
#chains in the Genus database with same CATH homology
 3CWX A;  3CWY A;  3DB7 A;  3DUE A;  4QOA A;  4POI A;  3ELG A;  4DSD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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