4E1SA

X-ray crystal structure of the transmembrane beta-domain from intimin from ehec strain o157:h7
Total Genus 69
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
242
structure length
242
Chain Sequence
QHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Cell adhesion
molecule keywords Intimin
publication title Crystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis.
pubmed doi rcsb
source organism Escherichia coli
total genus 69
structure length 242
sequence length 242
ec nomenclature
pdb deposition date 2012-03-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.160 Mainly Beta Beta Barrel Porin Porin 4e1sA00
4E1TA 4E1SA 5G26A
chains in the Genus database with same CATH superfamily
4FUVA 2AXTO 3UAQA 3VZWX 4AYNA 3SZVA 3NJTA 2J1NA 4XNKA 1S5LO 3A0HO 5AFUK 4FRXA 2N2LA 3O0EA 3PRNA 4FQEA 2OMFA 4O4UA 1OSMA 3VE1A 2J4UP 5PRNA 4RLBA 1GFOA 1T1LA 3RBHA 7PRNA 1P4TA 3BRYA 3DA3A 1HXXA 4QQ1A 4UB6O 4AKRB 1PHOA 4F4BA 3POQA 5EE2A 3VE2A 3NSGA 3SY9A 3G7GA 2R4LA 3AA6A 3JCUO 3HWBA 4C4VA 2R88A 4FRTA 4FT6A 2KZ7A 3V8UA 2XMXA 2K0LA 4G75A 4RJXA 2N2MA 4UB8O 4LSFA 3LK42 1IZNA 3AA1B 2PORA 4K3BA 4PJ0O 4RLCA 5G26A 1QJ9A 1MM4A 3VY8X 4FMSA 1HXUA 2XG6A 4AUIA 3C5OA 2F1VA 2R4NA 3TZGA 2F1CX 2ODJA 3DA4A 2MHLA 3VZTX 4CTDA 3AAAB 5G39A 3T0SA 4RJWA 2W80C 3AAEB 4N74A 3VZUX 4GCQA 3LK2A 2XTQA 1E54A 1YS5A 1BT9A 2R8AA 3DWOX 1ORMA 4N59A 4LSIA 3SY7A 2FGQX 3VY9X 2X27X 1THQA 3HW9A 5DL5A 3BS0A 5G3AA 3AA0A 3EMNX 2XE2A 3LK3B 1MPFA 4GCPA 5TISO 3KVDD 1BH3A 3UU2A 1ZHXA 3PGUA 4D64A 4KR4A 3T20A 4AYID 4U9CA 4JFBA 2R4OA 4O3WA 3POXA 4FOZA 2LFUA 3KZIO 4FSOA 3QRAA 1GFQA 3FYXA 3HOLA 4FZLA 2XE5A 1HXTA 5GTIO 3AA7B 1T16A 5GTHO 2ERVA 4D65A 1ZHTA 2YPVA 2KC0A 5KAIO 3WI5A 3PORA 4O4XA 1PRNA 3PF1A 2IWWA 4KRAA 3JTYA 4JCHA 5KAFO 4AYMC 4B61A 2Y0KA 3HOEA 4O49A 1G90A 8PRNA 4FZNA 4K3CA 2YNKA 1ZHWA 4C00A 2KDYA 4LSHA 4LSEA 2KZ7B 3PQUA 5DL8A 1QJPA 4AKRA 2FGRA 1ZHZA 2X9KA 3K19A 4GCSA 1IZNB 2W81C 1GFNA 2K4TA 2KXPB 2XTRA 2PRNA 3A2SX 3SZDA 3T24A 5H2FO 4AFKA 3UPGA 5ADXL 2QTKA 4IL6O 3BRZA 2MNHA 5DL6A 5FVNA 1QJ8A 5B66O 4O3XB 5B5EO 2XE3A 3WU2O 3LK41 4AYDC 3AA1A 2M07A 4N75A 4Z3TA 4GF4A 4D5UA 2JMMA 3LK2B 3SYBA 3SYSA 4C69X 2R89A 3AA7A 3PGSA 1ZHYA 4AYEC 4KR8A 2Y7SA 4N58A 3A0BO 4FZMA 5AFUL 4RL9A 2IWVA 4XNLA 1GFPA 3AAAA 3GP6A 3DWNA 2JQYA 3AAEA 4FSPA 5T5FA 3DZMA 1H6S1 2ZFGA 2M06A 2GE4A 3QRCA 4GHBA 3AA6B 4G76A 1Q9GA 2F1TA 2WJQA 3AA0B 3POUA 4O3YA 2WVPA 4C4VB 2LHFA 1BXWA 2O4VA 5D5DA 1MM5A 2ZLDA 3PQSA 4PUXA 5E79O 5G38A 6PRNA 4AKMA 5ADXK 4E1SA 5IYUA 4AZLA 4PR7A 1Q9FA 4FESA 5GV0A 1OPFA 1GFMA 2XE1A 2Y2XA 2KXPA 2WJRA 3LK3A 4O3ZA 3PGRA 3WI4A 4E1TA 5JDPA 2Y0HA 4BUMX 2Y0LA 5DL7A 2R4PA
chains in the Genus database with same CATH topology
4FUVA 3UAQA 3VZWX 4AYNA 3SZVA 2J1NA 4XNKA 5AFUK 4FRXA 2N2LA 3O0EA 3PRNA 4O4UA 2OMFA 1OSMA 3VE1A 2J4UP 5PRNA 4RLBA 1GFOA 3RBHA 7PRNA 1P4TA 3DA3A 4QQ1A 1HXXA 4AKRB 1PHOA 4F4BA 3POQA 5EE2A 3VE2A 3NSGA 3SY9A 3G7GA 3AA6A 3HWBA 4FRTA 4FT6A 2KZ7A 3V8UA 2XMXA 2K0LA 4G75A 4RJXA 2N2MA 4LSFA 3LK42 1IZNA 3AA1B 2PORA 4RLCA 5G26A 1QJ9A 1MM4A 3VY8X 4FMSA 1HXUA 2XG6A 4AUIA 3C5OA 2F1VA 3TZGA 2ODJA 3DA4A 2MHLA 3VZTX 3AAAB 3T0SA 4RJWA 2W80C 3AAEB 3VZUX 4GCQA 3LK2A 2XTQA 1E54A 1YS5A 1BT9A 1ORMA 4N59A 4LSIA 3SY7A 2FGQX 3VY9X 2X27X 1THQA 3HW9A 5DL5A 3AA0A 3EMNX 2XE2A 3LK3B 1MPFA 4GCPA 3KVDD 1BH3A 3UU2A 1ZHXA 4KR4A 3T20A 4AYID 4U9CA 4JFBA 4O3WA 3POXA 4FOZA 2LFUA 4FSOA 3QRAA 1GFQA 3FYXA 3HOLA 4FZLA 2XE5A 1HXTA 3AA7B 2ERVA 4D65A 1ZHTA 2YPVA 2KC0A 3WI5A 3PORA 4O4XA 1PRNA 4KRAA 3JTYA 4JCHA 4B61A 4AYMC 1G90A 2Y0KA 3HOEA 4O49A 8PRNA 4FZNA 2YNKA 1ZHWA 2KDYA 4LSHA 4LSEA 2KZ7B 3PQUA 5DL8A 1QJPA 4AKRA 2FGRA 1ZHZA 3K19A 4GCSA 1IZNB 2W81C 1GFNA 2K4TA 2KXPB 2XTRA 2PRNA 3A2SX 3SZDA 3T24A 3UPGA 4AFKA 5ADXL 2QTKA 5FVNA 2MNHA 5DL6A 1QJ8A 4O3XB 2XE3A 3LK41 4AYDC 3AA1A 2M07A 4Z3TA 4GF4A 4D5UA 2JMMA 3LK2B 3SYBA 3SYSA 4C69X 3AA7A 1ZHYA 4AYEC 4KR8A 2Y7SA 4N58A 4FZMA 5AFUL 4RL9A 4XNLA 1GFPA 3AAAA 3GP6A 3AAEA 4FSPA 5T5FA 1H6S1 2ZFGA 2M06A 2GE4A 3QRCA 4GHBA 3AA6B 4G76A 1Q9GA 2F1TA 3AA0B 3POUA 4O3YA 2LHFA 1BXWA 2O4VA 5D5DA 1MM5A 2ZLDA 3PQSA 4PUXA 6PRNA 5ADXK 4AKMA 5IYUA 4E1SA 4AZLA 1Q9FA 4FESA 5GV0A 1OPFA 1GFMA 2XE1A 2Y2XA 2KXPA 3LK3A 4O3ZA 3WI4A 4E1TA 5JDPA 2Y0HA 4BUMX 2Y0LA 5DL7A 4D64A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E1T A;  4E1S A;  5G26 A; 
#chains in the Genus database with same CATH topology
 4FUV A;  2AXT O;  3UAQ A;  3VZW X;  4AYN A;  3SZV A;  3NJT A;  2J1N A;  4XNK A;  1S5L O;  3A0H O;  5AFU K;  4FRX A;  2N2L A;  3O0E A;  3PRN A;  4FQE A;  2OMF A;  4O4U A;  1OSM A;  3VE1 A;  2J4U P;  5PRN A;  4RLB A;  1GFO A;  1T1L A;  3RBH A;  7PRN A;  1P4T A;  3BRY A;  3DA3 A;  1HXX A;  4QQ1 A;  4UB6 O;  4AKR B;  1PHO A;  4F4B A;  3POQ A;  5EE2 A;  3VE2 A;  3NSG A;  3SY9 A;  3G7G A;  2R4L A;  3AA6 A;  3JCU O;  3HWB A;  4C4V A;  2R88 A;  4FRT A;  4FT6 A;  2KZ7 A;  3V8U A;  2XMX A;  2K0L A;  4G75 A;  4RJX A;  2N2M A;  4UB8 O;  4LSF A;  3LK4 2;  1IZN A;  3AA1 B;  2POR A;  4K3B A;  4PJ0 O;  4RLC A;  5G26 A;  1QJ9 A;  1MM4 A;  3VY8 X;  4FMS A;  1HXU A;  2XG6 A;  4AUI A;  3C5O A;  2F1V A;  2R4N A;  3TZG A;  2F1C X;  2ODJ A;  3DA4 A;  2MHL A;  3VZT X;  4CTD A;  3AAA B;  5G39 A;  3T0S A;  4RJW A;  2W80 C;  3AAE B;  4N74 A;  3VZU X;  4GCQ A;  3LK2 A;  2XTQ A;  1E54 A;  1YS5 A;  1BT9 A;  2R8A A;  3DWO X;  1ORM A;  4N59 A;  4LSI A;  3SY7 A;  2FGQ X;  3VY9 X;  2X27 X;  1THQ A;  3HW9 A;  5DL5 A;  3BS0 A;  5G3A A;  3AA0 A;  3EMN X;  2XE2 A;  3LK3 B;  1MPF A;  4GCP A;  5TIS O;  3KVD D;  1BH3 A;  3UU2 A;  1ZHX A;  3PGU A;  4D64 A;  4KR4 A;  3T20 A;  4AYI D;  4U9C A;  4JFB A;  2R4O A;  4O3W A;  3POX A;  4FOZ A;  2LFU A;  3KZI O;  4FSO A;  3QRA A;  1GFQ A;  3FYX A;  3HOL A;  4FZL A;  2XE5 A;  1HXT A;  5GTI O;  3AA7 B;  1T16 A;  5GTH O;  2ERV A;  4D65 A;  1ZHT A;  2YPV A;  2KC0 A;  5KAI O;  3WI5 A;  3POR A;  4O4X A;  1PRN A;  3PF1 A;  2IWW A;  4KRA A;  3JTY A;  4JCH A;  5KAF O;  4AYM C;  4B61 A;  2Y0K A;  3HOE A;  4O49 A;  1G90 A;  8PRN A;  4FZN A;  4K3C A;  2YNK A;  1ZHW A;  4C00 A;  2KDY A;  4LSH A;  4LSE A;  2KZ7 B;  3PQU A;  5DL8 A;  1QJP A;  4AKR A;  2FGR A;  1ZHZ A;  2X9K A;  3K19 A;  4GCS A;  1IZN B;  2W81 C;  1GFN A;  2K4T A;  2KXP B;  2XTR A;  2PRN A;  3A2S X;  3SZD A;  3T24 A;  5H2F O;  4AFK A;  3UPG A;  5ADX L;  2QTK A;  4IL6 O;  3BRZ A;  2MNH A;  5DL6 A;  5FVN A;  1QJ8 A;  5B66 O;  4O3X B;  5B5E O;  2XE3 A;  3WU2 O;  3LK4 1;  4AYD C;  3AA1 A;  2M07 A;  4N75 A;  4Z3T A;  4GF4 A;  4D5U A;  2JMM A;  3LK2 B;  3SYB A;  3SYS A;  4C69 X;  2R89 A;  3AA7 A;  3PGS A;  1ZHY A;  4AYE C;  4KR8 A;  2Y7S A;  4N58 A;  3A0B O;  4FZM A;  5AFU L;  4RL9 A;  2IWV A;  4XNL A;  1GFP A;  3AAA A;  3GP6 A;  3DWN A;  2JQY A;  3AAE A;  4FSP A;  5T5F A;  3DZM A;  1H6S 1;  2ZFG A;  2M06 A;  2GE4 A;  3QRC A;  4GHB A;  3AA6 B;  4G76 A;  1Q9G A;  2F1T A;  2WJQ A;  3AA0 B;  3POU A;  4O3Y A;  2WVP A;  4C4V B;  2LHF A;  1BXW A;  2O4V A;  5D5D A;  1MM5 A;  2ZLD A;  3PQS A;  4PUX A;  5E79 O;  5G38 A;  6PRN A;  4AKM A;  5ADX K;  4E1S A;  5IYU A;  4AZL A;  4PR7 A;  1Q9F A;  4FES A;  5GV0 A;  1OPF A;  1GFM A;  2XE1 A;  2Y2X A;  2KXP A;  2WJR A;  3LK3 A;  4O3Z A;  3PGR A;  3WI4 A;  4E1T A;  5JDP A;  2Y0H A;  4BUM X;  2Y0L A;  5DL7 A;  2R4P A; 
#chains in the Genus database with same CATH homology
 4FUV A;  3UAQ A;  3VZW X;  4AYN A;  3SZV A;  2J1N A;  4XNK A;  5AFU K;  4FRX A;  2N2L A;  3O0E A;  3PRN A;  4O4U A;  2OMF A;  1OSM A;  3VE1 A;  2J4U P;  5PRN A;  4RLB A;  1GFO A;  3RBH A;  7PRN A;  1P4T A;  3DA3 A;  4QQ1 A;  1HXX A;  4AKR B;  1PHO A;  4F4B A;  3POQ A;  5EE2 A;  3VE2 A;  3NSG A;  3SY9 A;  3G7G A;  3AA6 A;  3HWB A;  4FRT A;  4FT6 A;  2KZ7 A;  3V8U A;  2XMX A;  2K0L A;  4G75 A;  4RJX A;  2N2M A;  4LSF A;  3LK4 2;  1IZN A;  3AA1 B;  2POR A;  4RLC A;  5G26 A;  1QJ9 A;  1MM4 A;  3VY8 X;  4FMS A;  1HXU A;  2XG6 A;  4AUI A;  3C5O A;  2F1V A;  3TZG A;  2ODJ A;  3DA4 A;  2MHL A;  3VZT X;  3AAA B;  3T0S A;  4RJW A;  2W80 C;  3AAE B;  3VZU X;  4GCQ A;  3LK2 A;  2XTQ A;  1E54 A;  1YS5 A;  1BT9 A;  1ORM A;  4N59 A;  4LSI A;  3SY7 A;  2FGQ X;  3VY9 X;  2X27 X;  1THQ A;  3HW9 A;  5DL5 A;  3AA0 A;  3EMN X;  2XE2 A;  3LK3 B;  1MPF A;  4GCP A;  3KVD D;  1BH3 A;  3UU2 A;  1ZHX A;  4KR4 A;  3T20 A;  4AYI D;  4U9C A;  4JFB A;  4O3W A;  3POX A;  4FOZ A;  2LFU A;  4FSO A;  3QRA A;  1GFQ A;  3FYX A;  3HOL A;  4FZL A;  2XE5 A;  1HXT A;  3AA7 B;  2ERV A;  4D65 A;  1ZHT A;  2YPV A;  2KC0 A;  3WI5 A;  3POR A;  4O4X A;  1PRN A;  4KRA A;  3JTY A;  4JCH A;  4B61 A;  4AYM C;  1G90 A;  2Y0K A;  3HOE A;  4O49 A;  8PRN A;  4FZN A;  2YNK A;  1ZHW A;  2KDY A;  4LSH A;  4LSE A;  2KZ7 B;  3PQU A;  5DL8 A;  1QJP A;  4AKR A;  2FGR A;  1ZHZ A;  3K19 A;  4GCS A;  1IZN B;  2W81 C;  1GFN A;  2K4T A;  2KXP B;  2XTR A;  2PRN A;  3A2S X;  3SZD A;  3T24 A;  3UPG A;  4AFK A;  5ADX L;  2QTK A;  5FVN A;  2MNH A;  5DL6 A;  1QJ8 A;  4O3X B;  2XE3 A;  3LK4 1;  4AYD C;  3AA1 A;  2M07 A;  4Z3T A;  4GF4 A;  4D5U A;  2JMM A;  3LK2 B;  3SYB A;  3SYS A;  4C69 X;  3AA7 A;  1ZHY A;  4AYE C;  4KR8 A;  2Y7S A;  4N58 A;  4FZM A;  5AFU L;  4RL9 A;  4XNL A;  1GFP A;  3AAA A;  3GP6 A;  3AAE A;  4FSP A;  5T5F A;  1H6S 1;  2ZFG A;  2M06 A;  2GE4 A;  3QRC A;  4GHB A;  3AA6 B;  4G76 A;  1Q9G A;  2F1T A;  3AA0 B;  3POU A;  4O3Y A;  2LHF A;  1BXW A;  2O4V A;  5D5D A;  1MM5 A;  2ZLD A;  3PQS A;  4PUX A;  6PRN A;  5ADX K;  4AKM A;  5IYU A;  4E1S A;  4AZL A;  1Q9F A;  4FES A;  5GV0 A;  1OPF A;  1GFM A;  2XE1 A;  2Y2X A;  2KXP A;  3LK3 A;  4O3Z A;  3WI4 A;  4E1T A;  5JDP A;  2Y0H A;  4BUM X;  2Y0L A;  5DL7 A;  4D64 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...