The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
23
|
sequence length |
100
|
structure length |
100
|
Chain Sequence |
AKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDDGGGGGGGSHTIEFFEMCANLIKILA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transferase
|
| molecule keywords |
5'-AMP-activated protein kinase catalytic subunit alpha-1
|
| publication title |
AMP-activated protein kinase undergoes nucleotide-dependent conformational changes
pubmed doi rcsb |
| source organism |
Rattus norvegicus
|
| total genus |
23
|
| structure length |
100
|
| sequence length |
100
|
| ec nomenclature |
ec
2.7.11.1: Non-specific serine/threonine protein kinase. |
| pdb deposition date | 2012-03-22 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Kinase associated domain 1, KA1 |
#chains in the Genus database with same CATH superfamily 2V8Q A; 1V5S A; 3T4N A; 4EAL A; 2QLV A; 4EAG A; 2EHB D; 4CFF A; 4EAJ A; 3OSE A; 2ZFD B; 2Y8Q A; 4EAI A; 1UL7 A; 2QRC A; 2QRE A; 2OOX A; 3TE5 A; 2OOY A; 2YA3 A; 2QRD A; 4EAK A; 2QR1 A; 2V92 A; 2V9J A; 3TDH A; 2Y8L A; #chains in the Genus database with same CATH topology 1WJW A; 2DKD A; 5IYC P; 3KTU A; 5BMN A; 3OCI A; 2QLV A; 3H1Z A; 4Q11 A; 4WZS D; 4B0A A; 4EAJ A; 4TPS A; 1PZD A; 2FKF A; 3CWA A; 1QN6 A; 2OOY A; 3CWU A; 1QN9 A; 2NOB A; 1C9B B; 1M5Q 1; 2YH5 A; 1TBP A; 5JN5 A; 2NOH A; 1N39 A; 1P5G X; 3OH6 A; 2G30 A; 1QN8 A; 1N3A A; 1JFI C; 3EAY A; 3IH7 A; 2I5W A; 1T6A A; 4HJH A; 1M3H A; 5IYB P; 1V5S A; 1YQM A; 1LWW A; 1PCZ A; 3CW7 A; 4CFF A; 3F10 A; 3OC3 C; 3OSE A; 2MJ7 A; 4D7Q A; 3BKQ X; 3HS8 A; 1QN5 A; 3PMG A; 1QTP A; 3EIK A; 3I3W A; 3OLP A; 3UW2 A; 1C47 A; 1J3M A; 1UL7 A; 2D0A A; 2QRC A; 2NOL A; 4PY5 A; 4EJY A; 1D3U A; 1K2Y X; 1C4G A; 1K35 A; 4MRQ A; 3I0W A; 1KFI A; 1RM1 A; 4DUL A; 1PVS A; 1QTS A; 1KO9 A; 2QRD A; 1VOK A; 3ENO C; 1VTL E; 1UT4 A; 4IL8 A; 3ENC A; 1KYU A; 2HKP A; 3OGD A; 2FGT A; 3CWS A; 1PCM X; 2V9J A; 1R4X A; 1Q9U A; 1P5D X; 2NOE A; 4ROE B; 1PCJ X; 1KFQ A; 2O3O A; 2IV8 A; 2V8Q A; 2NOI A; 3KRM A; 1QN3 A; 1B9K A; 3RPJ A; 4EAL A; 2Z8U A; 3OST A; 4EAG A; 1NH2 A; 2XHI A; 2EHB D; 2F7L A; 1DIZ A; 1YTF A; 2ZFD B; 1FN7 A; 2NOF A; 2JHN A; 1YTB A; 3N89 A; 2HL8 A; 3OSM A; 3D4V A; 2Y8Q A; 4EAI A; 4WX8 A; 2H5A X; 2QRE A; 1LWY A; 4BJU A; 1MPG A; 3DPT A; 1M3Q A; 1VOL B; 4EJZ A; 5HSH A; 1W80 A; 2H4L X; 1YQR A; 2YA3 A; 1LWV A; 4C7P A; 3C04 A; 2HL9 A; 2NLV A; 4D7R A; 4EAK A; 1EBM A; 1KYD A; 2IV9 A; 3DPU A; 1QNC A; 2LAE A; 3TDH A; 1CDW A; 1TBA B; 3D7Q A; 3HS9 A; 5BMP A; 2FKM X; 1KYF A; 1KY7 A; 2Y8L A; 2NVM A; 3ULX A; 1QNA A; 1MP9 A; 1EUV A; 1WQA A; 3ASM A; 4I8O A; 2R5X A; 1VTO A; 1YQK A; 3T4N A; 2VJ0 A; 1QNB A; 1E42 A; 1NGM A; 3CVS A; 1KY6 A; 1TUO A; 2PWW A; 1HU0 A; 4ROD B; 1LXT A; 3RSM A; 5F9C A; 4QG5 A; 1N3C A; 4WXA A; 1JDY A; 2JPI A; 2JOI A; 5AN4 A; 3F0Z A; 5JMV D; 1UT7 A; 1VKL A; 2OOX A; 3TE5 A; 1TGH A; 3CVT A; 3SNS A; 1AIS A; 3PDK A; 3I0X A; 1QN7 A; 5KL0 A; 2D0C A; 2NWV A; 2Z0F A; 3NA5 A; 3VN5 A; 1QN4 A; 1YQL A; 4ROC B; 2QR1 A; 2NOZ A; 2HZM A; 2V92 A; 2MZ8 A; 2HZS A; 3OH9 A; 1XSZ A; 3CWT A; 2FUV A; 1NVP A; 2D0B A; 5IYD P; 2DKA A; 5EPC A; 2JHJ A; 1QNE A; 2DKC A; #chains in the Genus database with same CATH homology 2V8Q A; 1V5S A; 3T4N A; 4EAL A; 2QLV A; 4EAG A; 2EHB D; 4CFF A; 4EAJ A; 3OSE A; 2ZFD B; 2Y8Q A; 4EAI A; 1UL7 A; 2QRC A; 2QRE A; 2OOX A; 3TE5 A; 2OOY A; 2YA3 A; 2QRD A; 4EAK A; 2QR1 A; 2V92 A; 2V9J A; 3TDH A; 2Y8L A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
