4EAKA

Co-crystal structure of an ampk core with atp
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
99
structure length
92
Chain Sequence
WHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDGSHTIEFFEMCANLIKILAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords 5'-AMP-activated protein kinase catalytic subunit alpha-1
publication title AMP-activated protein kinase undergoes nucleotide-dependent conformational changes
pubmed doi rcsb
source organism Rattus norvegicus
total genus 21
structure length 92
sequence length 99
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2012-03-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 4eakA01
2ZFDB 1UL7A 4EAKA 2V8QA 2QR1A 2V9JA 2QRDA 4EALA 2QRCA 2Y8LA 2OOYA 2YA3A 2QREA 2OOXA 3OSEA 3T4NA 2QLVA 4EAJA 4EAIA 2EHBD 4CFFA 2V92A 4EAGA 1V5SA 2Y8QA 3TDHA 3TE5A
chains in the Genus database with same CATH superfamily
1C4GA 3ULXA 2PWWA 1AISA 1JDYA 5IYDP 1YQLA 1PCZA 3ASMA 5BMNA 1QN7A 2R5XA 2Z0FA 1UT7A 2IV9A 3I3WA 2DKDA 3OH6A 1KYDA 1FN7A 1M5Q1 1KO9A 1TBPA 5F9CA 1J3MA 1VOLB 5JMVD 1QTSA 1VTLE 2O3OA 3CVTA 1YQMA 3SNSA 4EAJA 2EHBD 1CDWA 5HSHA 3I0WA 3H1ZA 2FKMX 4I8OA 1PZDA 4DULA 2V92A 1QN9A 3OSTA 1JFIC 1V5SA 1QN4A 3KRMA 4D7QA 2D0AA 1NVPA 4WX8A 3OCIA 2DKAA 2MJ7A 1M3QA 1MP9A 3CWUA 2NOZA 2NOFA 4B0AA 2V9JA 1TUOA 3C04A 2JHJA 1KY7A 4EALA 1E42A 3IH7A 3ENOC 3CWSA 2OOYA 3DPTA 1T6AA 1LWVA 1P5GX 2YA3A 2NOEA 2D0BA 4WZSD 1LXTA 2F7LA 1TBAB 4MRQA 1NGMA 3D7QA 3NA5A 1YTBA 1QNBA 4D7RA 1M3HA 4EAIA 3D4VA 2I5WA 2VJ0A 1WJWA 2HL9A 5AN4A 1C47A 1P5DX 1XSZA 3RPJA 2FKFA 2NVMA 1R4XA 2JOIA 4CFFA 4EAGA 5JN5A 2FUVA 1KFQA 1VOKA 2D0CA 2XHIA 5BMPA 1MPGA 3UW2A 1B9KA 1K35A 3TE5A 4RODB 2HKPA 2FGTA 2ZFDB 1UL7A 4ROEB 1QNEA 2H4LX 2JHNA 3HS9A 3RSMA 4C7PA 1N39A 2QRDA 5IYBP 3CW7A 3F0ZA 1PVSA 4WXAA 4QG5A 3PDKA 3OC3C 2QRCA 3CWAA 2Y8LA 4Q11A 2NOHA 1QN5A 4HJHA 2HL8A 3DPUA 1QNCA 1KFIA 2QREA 2DKCA 2Z8UA 4IL8A 1C9BB 1QN6A 2OOXA 1QN3A 1RM1A 2HZSA 1EUVA 3T4NA 1LWYA 2NOIA 2QLVA 1LWWA 3F10A 5IYCP 2MZ8A 3VN5A 3ENCA 4ROCB 3PMGA 3CWTA 2G30A 3OLPA 1VKLA 3EIKA 1W80A 5KL0A 1YQRA 1K2YX 3I0XA 4EAKA 1D3UA 2V8QA 3CVSA 2QR1A 1KYUA 1KYFA 1DIZA 3N89A 1EBMA 1YQKA 3OSMA 1VTOA 1QTPA 2H5AX 4EJZA 3KTUA 3OH9A 1NH2A 3BKQX 2NOBA 5EPCA 1TGHA 2IV8A 2LAEA 1KY6A 4TPSA 1HU0A 4EJYA 1PCJX 3HS8A 2NLVA 2NWVA 3OSEA 1WQAA 1QN8A 1N3CA 1QNAA 3OGDA 4PY5A 1N3AA 1PCMX 1UT4A 2NOLA 1Q9UA 2JPIA 2Y8QA 3EAYA 3TDHA 4BJUA 1YTFA 2HZMA 2YH5A
chains in the Genus database with same CATH topology
2ZFDB 1UL7A 4EAKA 2V8QA 2QR1A 2V9JA 2QRDA 4EALA 2QRCA 2Y8LA 2OOYA 2YA3A 2QREA 2OOXA 3OSEA 3T4NA 2QLVA 4EAJA 4EAIA 2EHBD 4CFFA 2V92A 4EAGA 1V5SA 2Y8QA 3TDHA 3TE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZFD B;  1UL7 A;  4EAK A;  2V8Q A;  2QR1 A;  2V9J A;  2QRD A;  4EAL A;  2QRC A;  2Y8L A;  2OOY A;  2YA3 A;  2QRE A;  2OOX A;  3OSE A;  3T4N A;  2QLV A;  4EAJ A;  4EAI A;  2EHB D;  4CFF A;  2V92 A;  4EAG A;  1V5S A;  2Y8Q A;  3TDH A;  3TE5 A; 
#chains in the Genus database with same CATH topology
 1C4G A;  3ULX A;  2PWW A;  1AIS A;  1JDY A;  5IYD P;  1YQL A;  1PCZ A;  3ASM A;  5BMN A;  1QN7 A;  2R5X A;  2Z0F A;  1UT7 A;  2IV9 A;  3I3W A;  2DKD A;  3OH6 A;  1KYD A;  1FN7 A;  1M5Q 1;  1KO9 A;  1TBP A;  5F9C A;  1J3M A;  1VOL B;  5JMV D;  1QTS A;  1VTL E;  2O3O A;  3CVT A;  1YQM A;  3SNS A;  4EAJ A;  2EHB D;  1CDW A;  5HSH A;  3I0W A;  3H1Z A;  2FKM X;  4I8O A;  1PZD A;  4DUL A;  2V92 A;  1QN9 A;  3OST A;  1JFI C;  1V5S A;  1QN4 A;  3KRM A;  4D7Q A;  2D0A A;  1NVP A;  4WX8 A;  3OCI A;  2DKA A;  2MJ7 A;  1M3Q A;  1MP9 A;  3CWU A;  2NOZ A;  2NOF A;  4B0A A;  2V9J A;  1TUO A;  3C04 A;  2JHJ A;  1KY7 A;  4EAL A;  1E42 A;  3IH7 A;  3ENO C;  3CWS A;  2OOY A;  3DPT A;  1T6A A;  1LWV A;  1P5G X;  2YA3 A;  2NOE A;  2D0B A;  4WZS D;  1LXT A;  2F7L A;  1TBA B;  4MRQ A;  1NGM A;  3D7Q A;  3NA5 A;  1YTB A;  1QNB A;  4D7R A;  1M3H A;  4EAI A;  3D4V A;  2I5W A;  2VJ0 A;  1WJW A;  2HL9 A;  5AN4 A;  1C47 A;  1P5D X;  1XSZ A;  3RPJ A;  2FKF A;  2NVM A;  1R4X A;  2JOI A;  4CFF A;  4EAG A;  5JN5 A;  2FUV A;  1KFQ A;  1VOK A;  2D0C A;  2XHI A;  5BMP A;  1MPG A;  3UW2 A;  1B9K A;  1K35 A;  3TE5 A;  4ROD B;  2HKP A;  2FGT A;  2ZFD B;  1UL7 A;  4ROE B;  1QNE A;  2H4L X;  2JHN A;  3HS9 A;  3RSM A;  4C7P A;  1N39 A;  2QRD A;  5IYB P;  3CW7 A;  3F0Z A;  1PVS A;  4WXA A;  4QG5 A;  3PDK A;  3OC3 C;  2QRC A;  3CWA A;  2Y8L A;  4Q11 A;  2NOH A;  1QN5 A;  4HJH A;  2HL8 A;  3DPU A;  1QNC A;  1KFI A;  2QRE A;  2DKC A;  2Z8U A;  4IL8 A;  1C9B B;  1QN6 A;  2OOX A;  1QN3 A;  1RM1 A;  2HZS A;  1EUV A;  3T4N A;  1LWY A;  2NOI A;  2QLV A;  1LWW A;  3F10 A;  5IYC P;  2MZ8 A;  3VN5 A;  3ENC A;  4ROC B;  3PMG A;  3CWT A;  2G30 A;  3OLP A;  1VKL A;  3EIK A;  1W80 A;  5KL0 A;  1YQR A;  1K2Y X;  3I0X A;  4EAK A;  1D3U A;  2V8Q A;  3CVS A;  2QR1 A;  1KYU A;  1KYF A;  1DIZ A;  3N89 A;  1EBM A;  1YQK A;  3OSM A;  1VTO A;  1QTP A;  2H5A X;  4EJZ A;  3KTU A;  3OH9 A;  1NH2 A;  3BKQ X;  2NOB A;  5EPC A;  1TGH A;  2IV8 A;  2LAE A;  1KY6 A;  4TPS A;  1HU0 A;  4EJY A;  1PCJ X;  3HS8 A;  2NLV A;  2NWV A;  3OSE A;  1WQA A;  1QN8 A;  1N3C A;  1QNA A;  3OGD A;  4PY5 A;  1N3A A;  1PCM X;  1UT4 A;  2NOL A;  1Q9U A;  2JPI A;  2Y8Q A;  3EAY A;  3TDH A;  4BJU A;  1YTF A;  2HZM A;  2YH5 A; 
#chains in the Genus database with same CATH homology
 2ZFD B;  1UL7 A;  4EAK A;  2V8Q A;  2QR1 A;  2V9J A;  2QRD A;  4EAL A;  2QRC A;  2Y8L A;  2OOY A;  2YA3 A;  2QRE A;  2OOX A;  3OSE A;  3T4N A;  2QLV A;  4EAJ A;  4EAI A;  2EHB D;  4CFF A;  2V92 A;  4EAG A;  1V5S A;  2Y8Q A;  3TDH A;  3TE5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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