4EMJB

Complex between the reductase and ferredoxin components of toluene dioxygenase
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVHVDLDNGELK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
molecule keywords TodA
total genus 21
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2012-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4emjB00
2QJPC 2HMKA 2YIUC 5KLVE 1SQBE 2GBWA 2B1XA 3GB4A 4QUQA 4NBCD 1NTZE 1KYOE 2HMNA 3EN1A 2NUKA 3VCAA 2A06E 3BCCE 5AEWA 3DQYA 2YVJB 1L0NE 4NB9D 2ZT9D 2YFJA 1PP9E 1NDOA 3CWBE 4QUPA 2E76D 4P1BH 4HM0A 4HM2A 2JZAA 1L0LE 4HJLA 4PV1D 1O7HA 1UUVA 3GTSA 3GZXA 3H1KE 1ZRTE 3H1IE 2B24A 2FYUE 2D2CD 2BMQA 4H13D 1VM9A 2HMMA 3GTEA 2NUMA 3CXHE 3L72E 4U3FE 3L74E 1O7PA 1BCCE 4HM4A 4NBFD 4HM8A 4OGQD 5CXMA 4QDDA 1G8KB 2FYNC 2QJKC 1EG9A 1NTME 4QCKA 3L71E 1SQVE 3GL2A 2E75D 4QDFB 1SQPE 3CX5E 4QDFA 5KKZC 1RIEA 3L70E 3GKEA 2IBZE 1NU1E 4P1CH 4HM5A 3VMHD 3EQQA 3L73E 4NBGD 3GL0A 4NBHD 4H0LD 1JM1A 3D89A 5KLIC 4NB8D 1O7GA 2DE6D 4NBED 1VCKA 4QDCA 4NBDD 3H1LE 1SQQE 3FOUA 1ULJA 1VF5D 2QPZA 2E74D 1UUWA 1EZVE 2YFLA 2XSOA 1SQXE 2QJYC 2NVGA 2NWFA 2HMLA 4HKVA 5BOKA 4AAYB 1RFSA 3VMGD 1ULIA 2ZYLA 4HM6A 1O7MA 3H1HE 5AEUA 2E4QA 1WQLA 3N0QA 2Q3WA 1P84E 3H1JE 3C0DA 4AIVA 2HMJA 1NTKE 1O7NA 2NVFA 1Q90C 4EMJB 1G8JB 2E4PA 3GZYA 4NBAD 2BMRA 2YFIA 1SJGA 1NYKA 4QURA 2HMOA 3AZCA 2JO6A 3VCPA 2BCCE 2NVEA 4PD4E 2DE5D 4NBBD 3GOBA 1O7WA 4HM3A 2XR8A 2DE7D 2BMOA 4HM1A 3TGUE 1KB9E 5HL4A 2GBXA 2I7FA 2XRXA 4HM7A 1PPJE 3VMID 4H44D 2CKFA 1FQTA 2XSHA 3L75E 3GCEA 1BE3E
chains in the Genus database with same CATH superfamily
2QJPC 2HMKA 2YIUC 5KLVE 1SQBE 2GBWA 2B1XA 3GB4A 4QUQA 4NBCD 1NTZE 1KYOE 2HMNA 3EN1A 2NUKA 3VCAA 2A06E 3BCCE 5AEWA 3DQYA 2YVJB 1L0NE 4NB9D 2ZT9D 2YFJA 1PP9E 1NDOA 3CWBE 4QUPA 2E76D 4P1BH 4HM0A 4HM2A 2JZAA 1L0LE 4HJLA 4PV1D 1O7HA 1UUVA 3GTSA 3GZXA 3H1KE 1ZRTE 3H1IE 2B24A 2FYUE 2D2CD 2BMQA 4H13D 1VM9A 2HMMA 3GTEA 2NUMA 3CXHE 3L72E 4U3FE 3L74E 1O7PA 1BCCE 4HM4A 4NBFD 4HM8A 4OGQD 5CXMA 4QDDA 1G8KB 2FYNC 2QJKC 1EG9A 1NTME 4QCKA 3L71E 1SQVE 3GL2A 2E75D 4QDFB 1SQPE 3CX5E 4QDFA 5KKZC 1RIEA 3L70E 3GKEA 2IBZE 1NU1E 4P1CH 4HM5A 3VMHD 3EQQA 3L73E 4NBGD 3GL0A 4NBHD 4H0LD 1JM1A 3D89A 5KLIC 4NB8D 1O7GA 2DE6D 4NBED 1VCKA 4QDCA 4NBDD 3H1LE 1SQQE 3FOUA 1ULJA 1VF5D 2QPZA 2E74D 1UUWA 1EZVE 2YFLA 2XSOA 1SQXE 2QJYC 2NVGA 2NWFA 2HMLA 4HKVA 5BOKA 4AAYB 1RFSA 3VMGD 1ULIA 2ZYLA 4HM6A 1O7MA 3H1HE 5AEUA 2E4QA 1WQLA 3N0QA 2Q3WA 1P84E 3H1JE 3C0DA 4AIVA 2HMJA 1NTKE 1O7NA 2NVFA 1Q90C 4EMJB 1G8JB 2E4PA 3GZYA 4NBAD 2BMRA 2YFIA 1SJGA 1NYKA 4QURA 2HMOA 3AZCA 2JO6A 3VCPA 2BCCE 2NVEA 4PD4E 2DE5D 4NBBD 3GOBA 1O7WA 4HM3A 2XR8A 2DE7D 2BMOA 4HM1A 3TGUE 1KB9E 5HL4A 2GBXA 2I7FA 2XRXA 4HM7A 1PPJE 3VMID 4H44D 2CKFA 1FQTA 2XSHA 3L75E 3GCEA 1BE3E
chains in the Genus database with same CATH topology
2QJPC 2HMKA 2YIUC 5KLVE 1SQBE 2GBWA 2B1XA 3GB4A 4QUQA 4NBCD 1NTZE 1KYOE 2HMNA 3EN1A 2NUKA 3VCAA 2A06E 3BCCE 5AEWA 3DQYA 2YVJB 1L0NE 4NB9D 2ZT9D 2YFJA 1PP9E 1NDOA 3CWBE 4QUPA 2E76D 4P1BH 4HM0A 4HM2A 2JZAA 1L0LE 4HJLA 4PV1D 1O7HA 1UUVA 3GTSA 3GZXA 3H1KE 1ZRTE 3H1IE 2B24A 2FYUE 2D2CD 2BMQA 4H13D 1VM9A 2HMMA 3GTEA 2NUMA 3CXHE 3L72E 4U3FE 3L74E 1O7PA 1BCCE 4HM4A 4NBFD 4HM8A 4OGQD 5CXMA 4QDDA 1G8KB 2FYNC 2QJKC 1EG9A 1NTME 4QCKA 3L71E 1SQVE 3GL2A 2E75D 4QDFB 1SQPE 3CX5E 4QDFA 5KKZC 1RIEA 3L70E 3GKEA 2IBZE 1NU1E 4P1CH 4HM5A 3VMHD 3EQQA 3L73E 4NBGD 3GL0A 4NBHD 4H0LD 1JM1A 3D89A 5KLIC 4NB8D 1O7GA 2DE6D 4NBED 1VCKA 4QDCA 4NBDD 3H1LE 1SQQE 3FOUA 1ULJA 1VF5D 2QPZA 2E74D 1UUWA 1EZVE 2YFLA 2XSOA 1SQXE 2QJYC 2NVGA 2NWFA 2HMLA 4HKVA 5BOKA 4AAYB 1RFSA 3VMGD 1ULIA 2ZYLA 4HM6A 1O7MA 3H1HE 5AEUA 2E4QA 1WQLA 3N0QA 2Q3WA 1P84E 3H1JE 3C0DA 4AIVA 2HMJA 1NTKE 1O7NA 2NVFA 1Q90C 4EMJB 1G8JB 2E4PA 3GZYA 4NBAD 2BMRA 2YFIA 1SJGA 1NYKA 4QURA 2HMOA 3AZCA 2JO6A 3VCPA 2BCCE 2NVEA 4PD4E 2DE5D 4NBBD 3GOBA 1O7WA 4HM3A 2XR8A 2DE7D 2BMOA 4HM1A 3TGUE 1KB9E 5HL4A 2GBXA 2I7FA 2XRXA 4HM7A 1PPJE 3VMID 4H44D 2CKFA 1FQTA 2XSHA 3L75E 3GCEA 1BE3E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJP C;  2HMK A;  2YIU C;  5KLV E;  1SQB E;  2GBW A;  2B1X A;  3GB4 A;  4QUQ A;  4NBC D;  1NTZ E;  1KYO E;  2HMN A;  3EN1 A;  2NUK A;  3VCA A;  2A06 E;  3BCC E;  5AEW A;  3DQY A;  2YVJ B;  1L0N E;  4NB9 D;  2ZT9 D;  2YFJ A;  1PP9 E;  1NDO A;  3CWB E;  4QUP A;  2E76 D;  4P1B H;  4HM0 A;  4HM2 A;  2JZA A;  1L0L E;  4HJL A;  4PV1 D;  1O7H A;  1UUV A;  3GTS A;  3GZX A;  3H1K E;  1ZRT E;  3H1I E;  2B24 A;  2FYU E;  2D2C D;  2BMQ A;  4H13 D;  1VM9 A;  2HMM A;  3GTE A;  2NUM A;  3CXH E;  3L72 E;  4U3F E;  3L74 E;  1O7P A;  1BCC E;  4HM4 A;  4NBF D;  4HM8 A;  4OGQ D;  5CXM A;  4QDD A;  1G8K B;  2FYN C;  2QJK C;  1EG9 A;  1NTM E;  4QCK A;  3L71 E;  1SQV E;  3GL2 A;  2E75 D;  4QDF B;  1SQP E;  3CX5 E;  4QDF A;  5KKZ C;  1RIE A;  3L70 E;  3GKE A;  2IBZ E;  1NU1 E;  4P1C H;  4HM5 A;  3VMH D;  3EQQ A;  3L73 E;  4NBG D;  3GL0 A;  4NBH D;  4H0L D;  1JM1 A;  3D89 A;  5KLI C;  4NB8 D;  1O7G A;  2DE6 D;  4NBE D;  1VCK A;  4QDC A;  4NBD D;  3H1L E;  1SQQ E;  3FOU A;  1ULJ A;  1VF5 D;  2QPZ A;  2E74 D;  1UUW A;  1EZV E;  2YFL A;  2XSO A;  1SQX E;  2QJY C;  2NVG A;  2NWF A;  2HML A;  4HKV A;  5BOK A;  4AAY B;  1RFS A;  3VMG D;  1ULI A;  2ZYL A;  4HM6 A;  1O7M A;  3H1H E;  5AEU A;  2E4Q A;  1WQL A;  3N0Q A;  2Q3W A;  1P84 E;  3H1J E;  3C0D A;  4AIV A;  2HMJ A;  1NTK E;  1O7N A;  2NVF A;  1Q90 C;  4EMJ B;  1G8J B;  2E4P A;  3GZY A;  4NBA D;  2BMR A;  2YFI A;  1SJG A;  1NYK A;  4QUR A;  2HMO A;  3AZC A;  2JO6 A;  3VCP A;  2BCC E;  2NVE A;  4PD4 E;  2DE5 D;  4NBB D;  3GOB A;  1O7W A;  4HM3 A;  2XR8 A;  2DE7 D;  2BMO A;  4HM1 A;  3TGU E;  1KB9 E;  5HL4 A;  2GBX A;  2I7F A;  2XRX A;  4HM7 A;  1PPJ E;  3VMI D;  4H44 D;  2CKF A;  1FQT A;  2XSH A;  3L75 E;  3GCE A;  1BE3 E; 
#chains in the Genus database with same CATH topology
 2QJP C;  2HMK A;  2YIU C;  5KLV E;  1SQB E;  2GBW A;  2B1X A;  3GB4 A;  4QUQ A;  4NBC D;  1NTZ E;  1KYO E;  2HMN A;  3EN1 A;  2NUK A;  3VCA A;  2A06 E;  3BCC E;  5AEW A;  3DQY A;  2YVJ B;  1L0N E;  4NB9 D;  2ZT9 D;  2YFJ A;  1PP9 E;  1NDO A;  3CWB E;  4QUP A;  2E76 D;  4P1B H;  4HM0 A;  4HM2 A;  2JZA A;  1L0L E;  4HJL A;  4PV1 D;  1O7H A;  1UUV A;  3GTS A;  3GZX A;  3H1K E;  1ZRT E;  3H1I E;  2B24 A;  2FYU E;  2D2C D;  2BMQ A;  4H13 D;  1VM9 A;  2HMM A;  3GTE A;  2NUM A;  3CXH E;  3L72 E;  4U3F E;  3L74 E;  1O7P A;  1BCC E;  4HM4 A;  4NBF D;  4HM8 A;  4OGQ D;  5CXM A;  4QDD A;  1G8K B;  2FYN C;  2QJK C;  1EG9 A;  1NTM E;  4QCK A;  3L71 E;  1SQV E;  3GL2 A;  2E75 D;  4QDF B;  1SQP E;  3CX5 E;  4QDF A;  5KKZ C;  1RIE A;  3L70 E;  3GKE A;  2IBZ E;  1NU1 E;  4P1C H;  4HM5 A;  3VMH D;  3EQQ A;  3L73 E;  4NBG D;  3GL0 A;  4NBH D;  4H0L D;  1JM1 A;  3D89 A;  5KLI C;  4NB8 D;  1O7G A;  2DE6 D;  4NBE D;  1VCK A;  4QDC A;  4NBD D;  3H1L E;  1SQQ E;  3FOU A;  1ULJ A;  1VF5 D;  2QPZ A;  2E74 D;  1UUW A;  1EZV E;  2YFL A;  2XSO A;  1SQX E;  2QJY C;  2NVG A;  2NWF A;  2HML A;  4HKV A;  5BOK A;  4AAY B;  1RFS A;  3VMG D;  1ULI A;  2ZYL A;  4HM6 A;  1O7M A;  3H1H E;  5AEU A;  2E4Q A;  1WQL A;  3N0Q A;  2Q3W A;  1P84 E;  3H1J E;  3C0D A;  4AIV A;  2HMJ A;  1NTK E;  1O7N A;  2NVF A;  1Q90 C;  4EMJ B;  1G8J B;  2E4P A;  3GZY A;  4NBA D;  2BMR A;  2YFI A;  1SJG A;  1NYK A;  4QUR A;  2HMO A;  3AZC A;  2JO6 A;  3VCP A;  2BCC E;  2NVE A;  4PD4 E;  2DE5 D;  4NBB D;  3GOB A;  1O7W A;  4HM3 A;  2XR8 A;  2DE7 D;  2BMO A;  4HM1 A;  3TGU E;  1KB9 E;  5HL4 A;  2GBX A;  2I7F A;  2XRX A;  4HM7 A;  1PPJ E;  3VMI D;  4H44 D;  2CKF A;  1FQT A;  2XSH A;  3L75 E;  3GCE A;  1BE3 E; 
#chains in the Genus database with same CATH homology
 2QJP C;  2HMK A;  2YIU C;  5KLV E;  1SQB E;  2GBW A;  2B1X A;  3GB4 A;  4QUQ A;  4NBC D;  1NTZ E;  1KYO E;  2HMN A;  3EN1 A;  2NUK A;  3VCA A;  2A06 E;  3BCC E;  5AEW A;  3DQY A;  2YVJ B;  1L0N E;  4NB9 D;  2ZT9 D;  2YFJ A;  1PP9 E;  1NDO A;  3CWB E;  4QUP A;  2E76 D;  4P1B H;  4HM0 A;  4HM2 A;  2JZA A;  1L0L E;  4HJL A;  4PV1 D;  1O7H A;  1UUV A;  3GTS A;  3GZX A;  3H1K E;  1ZRT E;  3H1I E;  2B24 A;  2FYU E;  2D2C D;  2BMQ A;  4H13 D;  1VM9 A;  2HMM A;  3GTE A;  2NUM A;  3CXH E;  3L72 E;  4U3F E;  3L74 E;  1O7P A;  1BCC E;  4HM4 A;  4NBF D;  4HM8 A;  4OGQ D;  5CXM A;  4QDD A;  1G8K B;  2FYN C;  2QJK C;  1EG9 A;  1NTM E;  4QCK A;  3L71 E;  1SQV E;  3GL2 A;  2E75 D;  4QDF B;  1SQP E;  3CX5 E;  4QDF A;  5KKZ C;  1RIE A;  3L70 E;  3GKE A;  2IBZ E;  1NU1 E;  4P1C H;  4HM5 A;  3VMH D;  3EQQ A;  3L73 E;  4NBG D;  3GL0 A;  4NBH D;  4H0L D;  1JM1 A;  3D89 A;  5KLI C;  4NB8 D;  1O7G A;  2DE6 D;  4NBE D;  1VCK A;  4QDC A;  4NBD D;  3H1L E;  1SQQ E;  3FOU A;  1ULJ A;  1VF5 D;  2QPZ A;  2E74 D;  1UUW A;  1EZV E;  2YFL A;  2XSO A;  1SQX E;  2QJY C;  2NVG A;  2NWF A;  2HML A;  4HKV A;  5BOK A;  4AAY B;  1RFS A;  3VMG D;  1ULI A;  2ZYL A;  4HM6 A;  1O7M A;  3H1H E;  5AEU A;  2E4Q A;  1WQL A;  3N0Q A;  2Q3W A;  1P84 E;  3H1J E;  3C0D A;  4AIV A;  2HMJ A;  1NTK E;  1O7N A;  2NVF A;  1Q90 C;  4EMJ B;  1G8J B;  2E4P A;  3GZY A;  4NBA D;  2BMR A;  2YFI A;  1SJG A;  1NYK A;  4QUR A;  2HMO A;  3AZC A;  2JO6 A;  3VCP A;  2BCC E;  2NVE A;  4PD4 E;  2DE5 D;  4NBB D;  3GOB A;  1O7W A;  4HM3 A;  2XR8 A;  2DE7 D;  2BMO A;  4HM1 A;  3TGU E;  1KB9 E;  5HL4 A;  2GBX A;  2I7F A;  2XRX A;  4HM7 A;  1PPJ E;  3VMI D;  4H44 D;  2CKF A;  1FQT A;  2XSH A;  3L75 E;  3GCE A;  1BE3 E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...