4EP8B

Initial urease structure for radiation damage experiment at 100 k
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Urease subunit alpha
publication title Spatial distribution of radiation damage to crystalline proteins at 25-300 K.
pubmed doi rcsb
source organism Enterobacter aerogenes
total genus 19
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2012-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 4ep8B00
1FWJB 4CEUB 5G4HB 3QGAA 3LA4A 1FWCB 1EJSB 4EP8B 3QGKA 1E9YA 4CEXB 1FWGB 1EJXB 4G7EB 4EPEB 3UBPB 1A5NB 1A5KB 1FWFB 4UBPB 1A5OB 1UBPB 1EJTB 5FSEB 4EPBB 4GOAA 1EJRB 1A5MB 1IE7B 1EJUB 1EF2B 1FWHB 4EPDB 1EJWB 1FWEB 5A6TB 1FWIB 2UBPB 4AC7B 1FWAB 1KRCB 1S3TB 2KAUB 4G7EA 1FWDB 1KRAB 4GY7A 1EJVB 1E9ZA 5FSDB 4Z42B 1KRBB 1A5LB 4H9MA 1FWBB
chains in the Genus database with same CATH superfamily
1FWJB 4CEUB 5G4HB 3QGAA 3LA4A 1FWCB 1EJSB 4EP8B 3QGKA 1E9YA 4CEXB 1FWGB 1EJXB 4G7EB 4EPEB 3UBPB 1A5NB 1A5KB 1FWFB 4UBPB 1A5OB 1UBPB 1EJTB 5FSEB 4EPBB 4GOAA 1EJRB 1A5MB 1IE7B 1EJUB 1EF2B 1FWHB 4EPDB 1EJWB 1FWEB 5A6TB 1FWIB 2UBPB 4AC7B 1FWAB 1KRCB 1S3TB 2KAUB 4G7EA 1FWDB 1KRAB 4GY7A 1EJVB 1E9ZA 5FSDB 4Z42B 1KRBB 1A5LB 4H9MA 1FWBB
chains in the Genus database with same CATH topology
1FWJB 4CEUB 5G4HB 3QGAA 3LA4A 1FWCB 1EJSB 4EP8B 3QGKA 1E9YA 4CEXB 1FWGB 1EJXB 4G7EB 4EPEB 3UBPB 1A5NB 1A5KB 1FWFB 4UBPB 1A5OB 1UBPB 1EJTB 5FSEB 4EPBB 4GOAA 1EJRB 1A5MB 1IE7B 1EJUB 1EF2B 1FWHB 4EPDB 1EJWB 1FWEB 5A6TB 1FWIB 2UBPB 4AC7B 1FWAB 1KRCB 1S3TB 2KAUB 4G7EA 1FWDB 1KRAB 4GY7A 1EJVB 1E9ZA 5FSDB 4Z42B 1KRBB 1A5LB 4H9MA 1FWBB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FWJ B;  4CEU B;  5G4H B;  3QGA A;  3LA4 A;  1FWC B;  1EJS B;  4EP8 B;  3QGK A;  1E9Y A;  4CEX B;  1FWG B;  1EJX B;  4G7E B;  4EPE B;  3UBP B;  1A5N B;  1A5K B;  1FWF B;  4UBP B;  1A5O B;  1UBP B;  1EJT B;  5FSE B;  4EPB B;  4GOA A;  1EJR B;  1A5M B;  1IE7 B;  1EJU B;  1EF2 B;  1FWH B;  4EPD B;  1EJW B;  1FWE B;  5A6T B;  1FWI B;  2UBP B;  4AC7 B;  1FWA B;  1KRC B;  1S3T B;  2KAU B;  4G7E A;  1FWD B;  1KRA B;  4GY7 A;  1EJV B;  1E9Z A;  5FSD B;  4Z42 B;  1KRB B;  1A5L B;  4H9M A;  1FWB B; 
#chains in the Genus database with same CATH topology
 1FWJ B;  4CEU B;  5G4H B;  3QGA A;  3LA4 A;  1FWC B;  1EJS B;  4EP8 B;  3QGK A;  1E9Y A;  4CEX B;  1FWG B;  1EJX B;  4G7E B;  4EPE B;  3UBP B;  1A5N B;  1A5K B;  1FWF B;  4UBP B;  1A5O B;  1UBP B;  1EJT B;  5FSE B;  4EPB B;  4GOA A;  1EJR B;  1A5M B;  1IE7 B;  1EJU B;  1EF2 B;  1FWH B;  4EPD B;  1EJW B;  1FWE B;  5A6T B;  1FWI B;  2UBP B;  4AC7 B;  1FWA B;  1KRC B;  1S3T B;  2KAU B;  4G7E A;  1FWD B;  1KRA B;  4GY7 A;  1EJV B;  1E9Z A;  5FSD B;  4Z42 B;  1KRB B;  1A5L B;  4H9M A;  1FWB B; 
#chains in the Genus database with same CATH homology
 1FWJ B;  4CEU B;  5G4H B;  3QGA A;  3LA4 A;  1FWC B;  1EJS B;  4EP8 B;  3QGK A;  1E9Y A;  4CEX B;  1FWG B;  1EJX B;  4G7E B;  4EPE B;  3UBP B;  1A5N B;  1A5K B;  1FWF B;  4UBP B;  1A5O B;  1UBP B;  1EJT B;  5FSE B;  4EPB B;  4GOA A;  1EJR B;  1A5M B;  1IE7 B;  1EJU B;  1EF2 B;  1FWH B;  4EPD B;  1EJW B;  1FWE B;  5A6T B;  1FWI B;  2UBP B;  4AC7 B;  1FWA B;  1KRC B;  1S3T B;  2KAU B;  4G7E A;  1FWD B;  1KRA B;  4GY7 A;  1EJV B;  1E9Z A;  5FSD B;  4Z42 B;  1KRB B;  1A5L B;  4H9M A;  1FWB B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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