4ERMA

Crystal structure of the datp inhibited e. coli class ia ribonucleotide reductase complex at 4 angstroms resolution
Total Genus 236
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
236
sequence length
733
structure length
733
Chain Sequence
NLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Ribonucleoside-diphosphate reductase 1 subunit alpha
publication title Tangled up in knots: structures of inactivated forms of E. coli class Ia ribonucleotide reductase.
pubmed doi rcsb
source organism Escherichia coli k-12
total genus 236
structure length 733
sequence length 733
chains with identical sequence B, C, D
ec nomenclature ec 1.17.4.1: Ribonucleoside-diphosphate reductase.
pdb deposition date 2012-04-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
A PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
A PF03477 ATP-cone ATP cone domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.70.20 Alpha Beta Alpha-Beta Barrel Anaerobic Ribonucleotide-triphosphate Reductase Large Chain Anaerobic Ribonucleotide-triphosphate Reductase Large Chain 4ermA02
1ZZDA 2ZLGA 1L1LA 3RSRA 3O0QA 3HNFA 3S87A 3O0OA 1CM5A 1R9DA 1XJFA 1H17A 1XJGA 1ZYZA 2PFLA 1XJKA 1MZOA 1H78A 3HNEA 4R1RA 3K8TA 4X3VA 5CNTA 1XJJA 1H18A 3S8AA 1RLRA 1PEMA 1QHMA 2XAWA 1H79A 3O0NA 2XO5A 5CNVA 3TBAA 2R1RA 1PEOA 2CVVA 3HNDA 1H16A 2YAJA 2ZLFA 2X0XA 4MTJA 1HK8A 1R1RA 2EUDA 1XJMA 2XAVA 2HA9A 2XAXA 5CNUA 1PEQA 2CVUA 2XAKA 1XJNA 5CNSA 3S8BA 1H7AA 6R1RA 2F3OA 2XO4A 2CVSA 1R8WA 2WGHA 3PFLA 2BQ1E 2CVYA 2XAZA 1XJEA 1H7BA 2CVWA 5R1RA 2XAPA 2Y8NA 3S8CA 1PEUA 3TB9A 2CVXA 2CVTA 2XAYA 3R1RA 3HNCA 7R1RA 4ERMA
chains in the Genus database with same CATH superfamily
1ZZDA 2ZLGA 1L1LA 3RSRA 3O0QA 3HNFA 3S87A 3O0OA 1CM5A 1R9DA 5FAWA 1XJFA 1H17A 1XJGA 1ZYZA 2PFLA 1XJKA 1MZOA 1H78A 3HNEA 4R1RA 5A0UA 3K8TA 4X3VA 5CNTA 1XJJA 1H18A 3S8AA 1RLRA 1PEMA 1QHMA 5A0ZA 2XAWA 1H79A 3O0NA 5FAYA 2XO5A 5CNVA 3TBAA 2R1RA 1PEOA 2CVVA 3HNDA 1H16A 2YAJA 2ZLFA 2X0XA 4MTJA 1HK8A 1R1RA 2EUDA 1XJMA 2XAVA 2HA9A 5FAVA 5KDPA 2XAXA 5CNUA 1PEQA 2CVUA 2XAKA 1XJNA 5CNSA 3S8BA 1H7AA 6R1RA 2F3OA 2XO4A 2CVSA 1R8WA 2WGHA 3PFLA 2BQ1E 2CVYA 2XAZA 1XJEA 1H7BA 2CVWA 5R1RA 2XAPA 2Y8NA 3S8CA 1PEUA 3TB9A 2CVXA 5FAUA 2CVTA 2XAYA 3R1RA 3HNCA 7R1RA 4ERMA
chains in the Genus database with same CATH topology
1ZZDA 2ZLGA 1L1LA 3RSRA 3O0QA 3HNFA 3S87A 3O0OA 1CM5A 1R9DA 5FAWA 1XJFA 1H17A 1XJGA 1ZYZA 2PFLA 1XJKA 1MZOA 1H78A 3HNEA 4R1RA 5A0UA 3K8TA 4X3VA 5CNTA 1XJJA 1H18A 3S8AA 1RLRA 1PEMA 1QHMA 5A0ZA 2XAWA 1H79A 3O0NA 5FAYA 2XO5A 5CNVA 3TBAA 2R1RA 1PEOA 2CVVA 3HNDA 1H16A 2YAJA 2ZLFA 2X0XA 4MTJA 1HK8A 1R1RA 2EUDA 1XJMA 2XAVA 2HA9A 5FAVA 5KDPA 2XAXA 5CNUA 1PEQA 2CVUA 2XAKA 1XJNA 5CNSA 3S8BA 1H7AA 6R1RA 2F3OA 2XO4A 2CVSA 1R8WA 2WGHA 3PFLA 2BQ1E 2CVYA 2XAZA 1XJEA 1H7BA 2CVWA 5R1RA 2XAPA 2Y8NA 3S8CA 1PEUA 3TB9A 2CVXA 5FAUA 2CVTA 2XAYA 3R1RA 3HNCA 7R1RA 4ERMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZZD A;  2ZLG A;  1L1L A;  3RSR A;  3O0Q A;  3HNF A;  3S87 A;  3O0O A;  1CM5 A;  1R9D A;  1XJF A;  1H17 A;  1XJG A;  1ZYZ A;  2PFL A;  1XJK A;  1MZO A;  1H78 A;  3HNE A;  4R1R A;  3K8T A;  4X3V A;  5CNT A;  1XJJ A;  1H18 A;  3S8A A;  1RLR A;  1PEM A;  1QHM A;  2XAW A;  1H79 A;  3O0N A;  2XO5 A;  5CNV A;  3TBA A;  2R1R A;  1PEO A;  2CVV A;  3HND A;  1H16 A;  2YAJ A;  2ZLF A;  2X0X A;  4MTJ A;  1HK8 A;  1R1R A;  2EUD A;  1XJM A;  2XAV A;  2HA9 A;  2XAX A;  5CNU A;  1PEQ A;  2CVU A;  2XAK A;  1XJN A;  5CNS A;  3S8B A;  1H7A A;  6R1R A;  2F3O A;  2XO4 A;  2CVS A;  1R8W A;  2WGH A;  3PFL A;  2BQ1 E;  2CVY A;  2XAZ A;  1XJE A;  1H7B A;  2CVW A;  5R1R A;  2XAP A;  2Y8N A;  3S8C A;  1PEU A;  3TB9 A;  2CVX A;  2CVT A;  2XAY A;  3R1R A;  3HNC A;  7R1R A;  4ERM A; 
#chains in the Genus database with same CATH topology
 1ZZD A;  2ZLG A;  1L1L A;  3RSR A;  3O0Q A;  3HNF A;  3S87 A;  3O0O A;  1CM5 A;  1R9D A;  5FAW A;  1XJF A;  1H17 A;  1XJG A;  1ZYZ A;  2PFL A;  1XJK A;  1MZO A;  1H78 A;  3HNE A;  4R1R A;  5A0U A;  3K8T A;  4X3V A;  5CNT A;  1XJJ A;  1H18 A;  3S8A A;  1RLR A;  1PEM A;  1QHM A;  5A0Z A;  2XAW A;  1H79 A;  3O0N A;  5FAY A;  2XO5 A;  5CNV A;  3TBA A;  2R1R A;  1PEO A;  2CVV A;  3HND A;  1H16 A;  2YAJ A;  2ZLF A;  2X0X A;  4MTJ A;  1HK8 A;  1R1R A;  2EUD A;  1XJM A;  2XAV A;  2HA9 A;  5FAV A;  5KDP A;  2XAX A;  5CNU A;  1PEQ A;  2CVU A;  2XAK A;  1XJN A;  5CNS A;  3S8B A;  1H7A A;  6R1R A;  2F3O A;  2XO4 A;  2CVS A;  1R8W A;  2WGH A;  3PFL A;  2BQ1 E;  2CVY A;  2XAZ A;  1XJE A;  1H7B A;  2CVW A;  5R1R A;  2XAP A;  2Y8N A;  3S8C A;  1PEU A;  3TB9 A;  2CVX A;  5FAU A;  2CVT A;  2XAY A;  3R1R A;  3HNC A;  7R1R A;  4ERM A; 
#chains in the Genus database with same CATH homology
 1ZZD A;  2ZLG A;  1L1L A;  3RSR A;  3O0Q A;  3HNF A;  3S87 A;  3O0O A;  1CM5 A;  1R9D A;  5FAW A;  1XJF A;  1H17 A;  1XJG A;  1ZYZ A;  2PFL A;  1XJK A;  1MZO A;  1H78 A;  3HNE A;  4R1R A;  5A0U A;  3K8T A;  4X3V A;  5CNT A;  1XJJ A;  1H18 A;  3S8A A;  1RLR A;  1PEM A;  1QHM A;  5A0Z A;  2XAW A;  1H79 A;  3O0N A;  5FAY A;  2XO5 A;  5CNV A;  3TBA A;  2R1R A;  1PEO A;  2CVV A;  3HND A;  1H16 A;  2YAJ A;  2ZLF A;  2X0X A;  4MTJ A;  1HK8 A;  1R1R A;  2EUD A;  1XJM A;  2XAV A;  2HA9 A;  5FAV A;  5KDP A;  2XAX A;  5CNU A;  1PEQ A;  2CVU A;  2XAK A;  1XJN A;  5CNS A;  3S8B A;  1H7A A;  6R1R A;  2F3O A;  2XO4 A;  2CVS A;  1R8W A;  2WGH A;  3PFL A;  2BQ1 E;  2CVY A;  2XAZ A;  1XJE A;  1H7B A;  2CVW A;  5R1R A;  2XAP A;  2Y8N A;  3S8C A;  1PEU A;  3TB9 A;  2CVX A;  5FAU A;  2CVT A;  2XAY A;  3R1R A;  3HNC A;  7R1R A;  4ERM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...