4EXTC

Structure of polymerase-interacting domain of human rev1 in complex with translesional synthesis polymerase zeta
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
204
structure length
198
Chain Sequence
TQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPSDSLLSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/transcription
molecule keywords DNA repair protein REV1
publication title Insights into the scaffold mechanism of human Rev1 in translesional synthesis revealed by structural studies on its polymerase-interacting domain
rcsb
source organism Homo sapiens
total genus 52
structure length 198
sequence length 204
ec nomenclature
pdb deposition date 2012-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02301 HORMA HORMA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.900.10 Alpha Beta 2-Layer Sandwich Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A HORMA domain 4extC00
3GMHA 3ABEC 5C50B 1KLQA 2V64D 1S2HA 4EXTC 4TZJA 4TZMA 5LCWZ 4TZNA 4TZLA 1GO4A 4YK8B 3VU7C 2V64A 4TZOA 4TZSA 4TZQA 2VFXA 1DUJA 3ABDA 4GK5A 4TRKA 4FJOC 2QYFA 4J2GA 4AEZB 4GK0A
chains in the Genus database with same CATH superfamily
3GMHA 3ABEC 5C50B 1KLQA 2V64D 1S2HA 4EXTC 4TZJA 4TZMA 5LCWZ 4TZNA 4TZLA 1GO4A 4YK8B 3VU7C 2V64A 4TZOA 4TZSA 4TZQA 2VFXA 1DUJA 3ABDA 4GK5A 4TRKA 2QYFB 4FJOC 2QYFA 4J2GA 4AEZB 4GK0A
chains in the Genus database with same CATH topology
3GMHA 3ABEC 5C50B 1KLQA 2V64D 1S2HA 4EXTC 4TZJA 4TZMA 5LCWZ 4TZNA 4TZLA 1GO4A 4YK8B 3VU7C 2V64A 4TZOA 4TZSA 4TZQA 2VFXA 1DUJA 3ABDA 4GK5A 4TRKA 4FJOC 2QYFA 4J2GA 4AEZB 4GK0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GMH A;  3ABE C;  5C50 B;  1KLQ A;  2V64 D;  1S2H A;  4EXT C;  4TZJ A;  4TZM A;  5LCW Z;  4TZN A;  4TZL A;  1GO4 A;  4YK8 B;  3VU7 C;  2V64 A;  4TZO A;  4TZS A;  4TZQ A;  2VFX A;  1DUJ A;  3ABD A;  4GK5 A;  4TRK A;  4FJO C;  2QYF A;  4J2G A;  4AEZ B;  4GK0 A; 
#chains in the Genus database with same CATH topology
 3GMH A;  3ABE C;  5C50 B;  1KLQ A;  2V64 D;  1S2H A;  4EXT C;  4TZJ A;  4TZM A;  5LCW Z;  4TZN A;  4TZL A;  1GO4 A;  4YK8 B;  3VU7 C;  2V64 A;  4TZO A;  4TZS A;  4TZQ A;  2VFX A;  1DUJ A;  3ABD A;  4GK5 A;  4TRK A;  2QYF B;  4FJO C;  2QYF A;  4J2G A;  4AEZ B;  4GK0 A; 
#chains in the Genus database with same CATH homology
 3GMH A;  3ABE C;  5C50 B;  1KLQ A;  2V64 D;  1S2H A;  4EXT C;  4TZJ A;  4TZM A;  5LCW Z;  4TZN A;  4TZL A;  1GO4 A;  4YK8 B;  3VU7 C;  2V64 A;  4TZO A;  4TZS A;  4TZQ A;  2VFX A;  1DUJ A;  3ABD A;  4GK5 A;  4TRK A;  4FJO C;  2QYF A;  4J2G A;  4AEZ B;  4GK0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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