4EZNA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pyrrhocoricin
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
211
structure length
211
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
total genus 60
structure length 211
sequence length 211
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4eznA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4eznA01
4WV7A 3T48A 3DPPA 2WINM 3QNJA 1DKZA 4JNEA 7HSCA 3T49A 3C7NA 5TKYA 3C7NB 4R5IA 3L3OM 3T46A 4JNFA 4EZTA 2OP6A 3H0XA 4FL9A 4R5KA 2QXLA 4JWDA 2QFFA 4EZPA 4EZYA 4EZNA 4H6HA 3T47A 3DOBA 4JWEA 3D2EA 3D2FA 4EZZA 1YUWA 4EZQA 4EZSA 1DG4A 4EZVA 5E84A 4EZXA 3DPOA 3DQGA 1CKRA 4F00A 2KHOA 4JN4A 1BPRA 2BPRA 4WV5A 3N8EA 4JWCA 2V7YA 4HY9A 1DKYA 4R5LA 4HYBA 1U00A 4R5JA 3OHXM 4H6IA 4JWIA 4R5GA 4EZOA 4EZRA 3DPQA 4EZUA 4EZWA 1DKXA 4B9QA 4PO2A 4F01A 4E81A 1Q5LA 3T4AG
chains in the Genus database with same CATH superfamily
3DX0A 3L3OM 1MJGA 2WYHA 2Q13A 3DX1A 3HAJA 3DPOA 1TQSA 1DKYA 2QKWA 1DKXA 2X3WA 4DYLA 2LXYA 1Q5LA 2F7QA 3KAVA 1O7DC 4UDYX 2YIBA 4ATMA 4EZQA 2GAFD 1UPXA 2BPRA 3HAIA 3OHXM 2RAJA 3ZEFA 3DQGA 4WPEA 3CAZA 3CKDA 1ZYLA 1X03A 3H0XA 1OAOA 4R5KA 4JWDA 2D4CA 4EZYA 3DOBA 3KDRA 4G6QA 3M3WA 3BVUA 1I4TA 4I1QA 4HYBA 4JWIA 2PY6A 4I43A 4B9QA 3ER9B 1TQWA 3DDGA 2WINM 3DYTA 1DKZA 4JNFA 1OA1A 1TQTA 4H8SA 1SU6A 1WDZA 4AZ5A 2OO2A 4BNEA 2YL9A 3N8EA 3ERCC 2OBLA 3CVRA 3OK8A 2X3VA 3RV1A 4AZGA 1I4DA 1SUFA 5TKYA 2OBMA 2JNSA 4M0MA 3T46A 1R33A 2PMRA 2YIAA 4ILGA 4EZPA 3SBTB 4NPHA 2Z0NA 4FM3A 4AZBA 3LLLA 3D51A 2F7PA 4EZWA 2F1AA 4WV7A 1LQ7A 3T47A 3GI7A 2NCZA 3CZSA 1QWNA 2YI9A 1HWWA 2KHOA 1QWUA 2EX3B 4R5JA 1TQUA 2OW6A 4E81A 5FIGA 3DPPA 2D1LA 3QE6A 4FL9A 2ZXQA 1Y2OA 5C5BA 5C5BB 2F1BA 3BUQA 4EZZA 4F00A 2OZNB 2YIVX 2Z0VA 1E2UA 2YL5A 3O3NB 4AZHA 1JQKA 4ILIA 3ACOA 3I2WA 3L3PA 3BVTA 1W9MA 2YL8A 3QWEA 4JWEA 4IM2A 1X04A 4JN4A 4HY9A 3SBSA 2X3XA 4EZRA 4DCNC 3D50A 2YI8A 3B52X 2YKTA 3OWGA 3BUPA 3D52A 3T49A 2ND1A 2WYIA 3EJRA 2QXLA 4HR1A 4HR1B 4IW0A 4EZXA 4NSWA 1TQVA 2V7YA 4D8JA 2ALWA 1E9VA 4E3CA 2Z8YA 3DPQA 4PO2A 3FD9A 4ILHB 2YLAA 3A98A 4JLCA 1HTYA 4EZNA 1YUWA 3PLTA 2C08A 1ZWWA 2N3KA 4WV5A 2ND0A 4R5LA 2GA9D 4EZOA 1SU7A 4IM3A 3LMFA 4EZUA 2RAIA 3T48A 7HSCA 4AZIA 4AZ7A 3BLBA 4H6HA 3Q84A 3D2EA 1I49A 5E84A 3UITA 3DDFA 1U00A 2FICA 4AKVA 2RT6A 4JL9A 4AVMA 3EJPA 2V0OA 3DX3A 2Z0OA 2X5CA 3EJSA 3G9GA 2EFLA 4IM0A 3EJUA 3HAHA 4NQIA 4FZPA 1CKRA 2MI7A 2Q12A 4KIKA 4KIKB 4UDXX 1GN9A 3B53X 2F7RA 3RV0A 2YLLA 2F18A 3CZNA 1E1DA 3DX2A 3D2FA 3BUBA 2JNKA 4EZSA 4MQDA 3DX4A 2O0I1 1PS3A 3VEBA 3D4YA 3LVTA 1GNTA 3ER8C 2OW7A 2EWFA 3O3MB 2GF4A 5KBPA 3KAWA 3BVWA 3RPMA 1GNLA 2QFFA 3VKHA 3SYVA 4EZVA 1SU8A 4IWQA 1BPRA 2F7OA 1URUA 4JWCA 1R34A 4H6IA 3ABHA 3QNIA 4F01A 4FZOA 3QNJA 3BUIA 4R5IA 1R5EA 4EZTA 3ZEDA 3I01A 2FYVA 3CV5A 4AZ6A 4IWPA 1O7DB 1I4LA 3BVXA 2ELBA 2EFKA 4IWOA 2RAKA 4R5GA 5FLEX 1QX1A 3D4ZA 4AZCA 4AZCB 2LM0A 3BVVA 3F7WA 3T4AG 3EJTA 4WPCA 3Q0KA 4JNEA 3C7NA 3O3OB 3C7NB 3I39X 3B51X 3SOGA 2OP6A 3I04A 4FZSA 2YL6A 1DG4A 3QA8A 3BUDA 3EJQA 3VEAA 1OA0A 1YWMA 1HXKA
chains in the Genus database with same CATH topology
3B52X 3OWGA 1SUFA 3T49A 5TKYA 2OBMA 3L3OM 2JNSA 4M0MA 3T46A 2ND1A 2YIAA 2QXLA 4ILGA 1MJGA 4EZPA 1E1DA 3SBTB 3D2FA 4HR1A 4EZSA 4HR1B 4IW0A 4EZXA 4NPHA 3DPOA 4MQDA 3VEBA 2V7YA 4FM3A 1GNTA 4D8JA 1DKYA 3ER8C 1E9VA 4E3CA 2Z8YA 3DPQA 4EZWA 1DKXA 2EWFA 4PO2A 3FD9A 1Q5LA 4ILHB 4WV7A 3O3MB 3KAWA 3A98A 4JLCA 3KAVA 1GNLA 2QFFA 2YIBA 4UDYX 4EZNA 3VKHA 3T47A 1YUWA 3GI7A 2NCZA 4EZQA 4EZVA 2GAFD 1SU8A 2YI9A 2N3KA 2KHOA 4IWQA 1UPXA 4WV5A 1BPRA 2BPRA 4JWCA 2ND0A 4R5LA 2EX3B 2GA9D 3OHXM 4H6IA 4R5JA 4EZOA 1SU7A 4IM3A 3LMFA 3ZEFA 4EZUA 4F01A 4E81A 3DQGA 5FIGA 3T48A 3DPPA 3QNJA 7HSCA 4R5IA 1ZYLA 4EZTA 3H0XA 4FL9A 1OAOA 4R5KA 4JWDA 3ZEDA 3I01A 4EZYA 4H6HA 3DOBA 3D2EA 3KDRA 4EZZA 5E84A 3UITA 4F00A 2YIVX 4G6QA 1E2UA 4IWPA 3O3NB 1JQKA 4IWOA 4ILIA 4HYBA 1U00A 4JWIA 4R5GA 2PY6A 5FLEX 4I43A 4B9QA 3ER9B 2LM0A 3F7WA 3T4AG 1W9MA 2RT6A 4JL9A 2WINM 4JNEA 1DKZA 3C7NA 3O3OB 3C7NB 3I39X 4JNFA 1OA1A 3B51X 2OP6A 2X5CA 3I04A 4IM0A 4JWEA 4IM2A 1DG4A 1SU6A 3QA8A 1CKRA 4JN4A 4KIKA 4KIKB 3N8EA 3VEAA 4UDXX 2OBLA 1OA0A 4HY9A 3ERCC 3SBSA 4EZRA 1GN9A 3B53X 3RV1A 3RV0A 2YI8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WV7 A;  3T48 A;  3DPP A;  2WIN M;  3QNJ A;  1DKZ A;  4JNE A;  7HSC A;  3T49 A;  3C7N A;  5TKY A;  3C7N B;  4R5I A;  3L3O M;  3T46 A;  4JNF A;  4EZT A;  2OP6 A;  3H0X A;  4FL9 A;  4R5K A;  2QXL A;  4JWD A;  2QFF A;  4EZP A;  4EZY A;  4EZN A;  4H6H A;  3T47 A;  3DOB A;  4JWE A;  3D2E A;  3D2F A;  4EZZ A;  1YUW A;  4EZQ A;  4EZS A;  1DG4 A;  4EZV A;  5E84 A;  4EZX A;  3DPO A;  3DQG A;  1CKR A;  4F00 A;  2KHO A;  4JN4 A;  1BPR A;  2BPR A;  4WV5 A;  3N8E A;  4JWC A;  2V7Y A;  4HY9 A;  1DKY A;  4R5L A;  4HYB A;  1U00 A;  4R5J A;  3OHX M;  4H6I A;  4JWI A;  4R5G A;  4EZO A;  4EZR A;  3DPQ A;  4EZU A;  4EZW A;  1DKX A;  4B9Q A;  4PO2 A;  4F01 A;  4E81 A;  1Q5L A;  3T4A G; 
#chains in the Genus database with same CATH topology
 3DX0 A;  3L3O M;  1MJG A;  2WYH A;  2Q13 A;  3DX1 A;  3HAJ A;  3DPO A;  1TQS A;  1DKY A;  2QKW A;  1DKX A;  2X3W A;  4DYL A;  2LXY A;  1Q5L A;  2F7Q A;  3KAV A;  1O7D C;  4UDY X;  2YIB A;  4ATM A;  4EZQ A;  2GAF D;  1UPX A;  2BPR A;  3HAI A;  3OHX M;  2RAJ A;  3ZEF A;  3DQG A;  4WPE A;  3CAZ A;  3CKD A;  1ZYL A;  1X03 A;  3H0X A;  1OAO A;  4R5K A;  4JWD A;  2D4C A;  4EZY A;  3DOB A;  3KDR A;  4G6Q A;  3M3W A;  3BVU A;  1I4T A;  4I1Q A;  4HYB A;  4JWI A;  2PY6 A;  4I43 A;  4B9Q A;  3ER9 B;  1TQW A;  3DDG A;  2WIN M;  3DYT A;  1DKZ A;  4JNF A;  1OA1 A;  1TQT A;  4H8S A;  1SU6 A;  1WDZ A;  4AZ5 A;  2OO2 A;  4BNE A;  2YL9 A;  3N8E A;  3ERC C;  2OBL A;  3CVR A;  3OK8 A;  2X3V A;  3RV1 A;  4AZG A;  1I4D A;  1SUF A;  5TKY A;  2OBM A;  2JNS A;  4M0M A;  3T46 A;  1R33 A;  2PMR A;  2YIA A;  4ILG A;  4EZP A;  3SBT B;  4NPH A;  2Z0N A;  4FM3 A;  4AZB A;  3LLL A;  3D51 A;  2F7P A;  4EZW A;  2F1A A;  4WV7 A;  1LQ7 A;  3T47 A;  3GI7 A;  2NCZ A;  3CZS A;  1QWN A;  2YI9 A;  1HWW A;  2KHO A;  1QWU A;  2EX3 B;  4R5J A;  1TQU A;  2OW6 A;  4E81 A;  5FIG A;  3DPP A;  2D1L A;  3QE6 A;  4FL9 A;  2ZXQ A;  1Y2O A;  5C5B A;  5C5B B;  2F1B A;  3BUQ A;  4EZZ A;  4F00 A;  2OZN B;  2YIV X;  2Z0V A;  1E2U A;  2YL5 A;  3O3N B;  4AZH A;  1JQK A;  4ILI A;  3ACO A;  3I2W A;  3L3P A;  3BVT A;  1W9M A;  2YL8 A;  3QWE A;  4JWE A;  4IM2 A;  1X04 A;  4JN4 A;  4HY9 A;  3SBS A;  2X3X A;  4EZR A;  4DCN C;  3D50 A;  2YI8 A;  3B52 X;  2YKT A;  3OWG A;  3BUP A;  3D52 A;  3T49 A;  2ND1 A;  2WYI A;  3EJR A;  2QXL A;  4HR1 A;  4HR1 B;  4IW0 A;  4EZX A;  4NSW A;  1TQV A;  2V7Y A;  4D8J A;  2ALW A;  1E9V A;  4E3C A;  2Z8Y A;  3DPQ A;  4PO2 A;  3FD9 A;  4ILH B;  2YLA A;  3A98 A;  4JLC A;  1HTY A;  4EZN A;  1YUW A;  3PLT A;  2C08 A;  1ZWW A;  2N3K A;  4WV5 A;  2ND0 A;  4R5L A;  2GA9 D;  4EZO A;  1SU7 A;  4IM3 A;  3LMF A;  4EZU A;  2RAI A;  3T48 A;  7HSC A;  4AZI A;  4AZ7 A;  3BLB A;  4H6H A;  3Q84 A;  3D2E A;  1I49 A;  5E84 A;  3UIT A;  3DDF A;  1U00 A;  2FIC A;  4AKV A;  2RT6 A;  4JL9 A;  4AVM A;  3EJP A;  2V0O A;  3DX3 A;  2Z0O A;  2X5C A;  3EJS A;  3G9G A;  2EFL A;  4IM0 A;  3EJU A;  3HAH A;  4NQI A;  4FZP A;  1CKR A;  2MI7 A;  2Q12 A;  4KIK A;  4KIK B;  4UDX X;  1GN9 A;  3B53 X;  2F7R A;  3RV0 A;  2YLL A;  2F18 A;  3CZN A;  1E1D A;  3DX2 A;  3D2F A;  3BUB A;  2JNK A;  4EZS A;  4MQD A;  3DX4 A;  2O0I 1;  1PS3 A;  3VEB A;  3D4Y A;  3LVT A;  1GNT A;  3ER8 C;  2OW7 A;  2EWF A;  3O3M B;  2GF4 A;  5KBP A;  3KAW A;  3BVW A;  3RPM A;  1GNL A;  2QFF A;  3VKH A;  3SYV A;  4EZV A;  1SU8 A;  4IWQ A;  1BPR A;  2F7O A;  1URU A;  4JWC A;  1R34 A;  4H6I A;  3ABH A;  3QNI A;  4F01 A;  4FZO A;  3QNJ A;  3BUI A;  4R5I A;  1R5E A;  4EZT A;  3ZED A;  3I01 A;  2FYV A;  3CV5 A;  4AZ6 A;  4IWP A;  1O7D B;  1I4L A;  3BVX A;  2ELB A;  2EFK A;  4IWO A;  2RAK A;  4R5G A;  5FLE X;  1QX1 A;  3D4Z A;  4AZC A;  4AZC B;  2LM0 A;  3BVV A;  3F7W A;  3T4A G;  3EJT A;  4WPC A;  3Q0K A;  4JNE A;  3C7N A;  3O3O B;  3C7N B;  3I39 X;  3B51 X;  3SOG A;  2OP6 A;  3I04 A;  4FZS A;  2YL6 A;  1DG4 A;  3QA8 A;  3BUD A;  3EJQ A;  3VEA A;  1OA0 A;  1YWM A;  1HXK A; 
#chains in the Genus database with same CATH homology
 3B52 X;  3OWG A;  1SUF A;  3T49 A;  5TKY A;  2OBM A;  3L3O M;  2JNS A;  4M0M A;  3T46 A;  2ND1 A;  2YIA A;  2QXL A;  4ILG A;  1MJG A;  4EZP A;  1E1D A;  3SBT B;  3D2F A;  4HR1 A;  4EZS A;  4HR1 B;  4IW0 A;  4EZX A;  4NPH A;  3DPO A;  4MQD A;  3VEB A;  2V7Y A;  4FM3 A;  1GNT A;  4D8J A;  1DKY A;  3ER8 C;  1E9V A;  4E3C A;  2Z8Y A;  3DPQ A;  4EZW A;  1DKX A;  2EWF A;  4PO2 A;  3FD9 A;  1Q5L A;  4ILH B;  4WV7 A;  3O3M B;  3KAW A;  3A98 A;  4JLC A;  3KAV A;  1GNL A;  2QFF A;  2YIB A;  4UDY X;  4EZN A;  3VKH A;  3T47 A;  1YUW A;  3GI7 A;  2NCZ A;  4EZQ A;  4EZV A;  2GAF D;  1SU8 A;  2YI9 A;  2N3K A;  2KHO A;  4IWQ A;  1UPX A;  4WV5 A;  1BPR A;  2BPR A;  4JWC A;  2ND0 A;  4R5L A;  2EX3 B;  2GA9 D;  3OHX M;  4H6I A;  4R5J A;  4EZO A;  1SU7 A;  4IM3 A;  3LMF A;  3ZEF A;  4EZU A;  4F01 A;  4E81 A;  3DQG A;  5FIG A;  3T48 A;  3DPP A;  3QNJ A;  7HSC A;  4R5I A;  1ZYL A;  4EZT A;  3H0X A;  4FL9 A;  1OAO A;  4R5K A;  4JWD A;  3ZED A;  3I01 A;  4EZY A;  4H6H A;  3DOB A;  3D2E A;  3KDR A;  4EZZ A;  5E84 A;  3UIT A;  4F00 A;  2YIV X;  4G6Q A;  1E2U A;  4IWP A;  3O3N B;  1JQK A;  4IWO A;  4ILI A;  4HYB A;  1U00 A;  4JWI A;  4R5G A;  2PY6 A;  5FLE X;  4I43 A;  4B9Q A;  3ER9 B;  2LM0 A;  3F7W A;  3T4A G;  1W9M A;  2RT6 A;  4JL9 A;  2WIN M;  4JNE A;  1DKZ A;  3C7N A;  3O3O B;  3C7N B;  3I39 X;  4JNF A;  1OA1 A;  3B51 X;  2OP6 A;  2X5C A;  3I04 A;  4IM0 A;  4JWE A;  4IM2 A;  1DG4 A;  1SU6 A;  3QA8 A;  1CKR A;  4JN4 A;  4KIK A;  4KIK B;  3N8E A;  3VEA A;  4UDX X;  2OBL A;  1OA0 A;  4HY9 A;  3ERC C;  3SBS A;  4EZR A;  1GN9 A;  3B53 X;  3RV1 A;  3RV0 A;  2YI8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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