4EZPA

Crystal structure of the substrate binding domain of e.coli dnak in complex with a3-apo(residues 1 to 20)
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
211
structure length
211
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
total genus 59
structure length 211
sequence length 211
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezpA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezpA01
1DKYA 3OHXM 4JWIA 4R5JA 5TKYA 4JN4A 4EZNA 4F00A 3DQGA 3T46A 4HYBA 4JNEA 4EZZA 1DKXA 1DG4A 4PO2A 4EZTA 4JWDA 4R5LA 4R5IA 1Q5LA 3DOBA 4FL9A 3L3OM 2BPRA 3QNJA 4HY9A 3T49A 1YUWA 2WINM 7HSCA 3D2EA 4JWEA 2QXLA 3D2FA 3DPOA 4H6HA 4JNFA 3DPQA 4R5GA 3T47A 3T48A 4EZYA 4EZOA 2V7YA 4JWCA 4EZUA 1DKZA 4F01A 4EZSA 3H0XA 4EZXA 4R5KA 4EZPA 1BPRA 3N8EA 4EZWA 4E81A 4EZVA 3C7NB 3C7NA 1U00A 3DPPA 2OP6A 4WV5A 3T4AG 4WV7A 2KHOA 4H6IA 2QFFA 5E84A 4B9QA 4EZRA 1CKRA 4EZQA
chains in the Genus database with same CATH superfamily
1DKYA 1HXKA 2YIAA 1QWUA 2C08A 4JNEA 4R5IA 4AVMA 3B51X 4JWEA 2Z0NA 3T47A 3DDFA 3F7WA 1X03A 4IWPA 2EX3B 3Q84A 4HYBA 4JLCA 3RV1A 2Q12A 1I49A 3L3PA 3ABHA 4HY9A 4JNFA 2V0OA 3VEBA 4EZUA 3D50A 1I4DA 2F7PA 5E84A 2YLAA 3D51A 3BVTA 4ILHB 3CAZA 3I2WA 3BUDA 1Q5LA 2F18A 3Q0KA 3D2EA 3D2FA 3BUBA 3QNIA 2FYVA 4JWCA 4FM3A 3KDRA 3O3NB 2Q13A 4ATMA 1TQSA 2OZNB 1QWNA 4PO2A 2GF4A 2RAJA 3QNJA 2X5CA 4FZPA 2EFKA 4EZXA 4R5KA 3ZEDA 3DX0A 5TKYA 1QX1A 4G6QA 5C5BA 5C5BB 1ZWWA 3QWEA 4IM2A 3M3WA 2EWFA 2BPRA 7HSCA 5FIGA 3T49A 3QA8A 4WPCA 2RT6A 3VEAA 4HR1B 2LXYA 3N8EA 2OP6A 4H6IA 4KIKB 3PLTA 4FZOA 4KIKA 2EFLA 4UDXX 2YKTA 2RAIA 3B53X 3VKHA 4AZHA 1DG4A 4R5GA 4ILGA 3CVRA 1BPRA 2X3VA 3O3MB 2PMRA 5KBPA 3SOGA 2WYHA 3BVXA 4JWIA 2YIBA 3I39X 3EJPA 4AZ5A 1SU7A 2X3XA 3RPMA 1HTYA 1TQTA 2F7OA 4H6HA 3DX3A 2V7YA 1R34A 2ZXQA 2D4CA 3DX1A 4AZCB 4AZCA 3SBSA 3OWGA 3QE6A 4B9QA 3LLLA 3EJSA 3D4YA 4D8JA 3BLBA 3RV0A 2O0I1 2JNKA 4R5LA 1I4LA 3L3OM 4AZ6A 2YL6A 4M0MA 2WINM 4IM0A 1E1DA 2YI9A 2RAKA 3T48A 2OO2A 1UPXA 3LVTA 2OBLA 3SYVA 2FICA 4DYLA 3CZNA 2OW7A 4H8SA 4EZNA 4AKVA 1YWMA 3BVUA 3DOBA 4FL9A 1R5EA 1YUWA 3D52A 2LM0A 2ND1A 1OAOA 1I4TA 3EJQA 3KAWA 3ER9B 4E81A 3ER8C 2GAFD 4JN4A 2ND0A 1OA0A 4AZBA 3T46A 2YL5A 3I01A 3LMFA 1GNLA 3HAHA 5FLEX 4HR1A 1MJGA 3KAVA 3DDGA 4WV5A 1JQKA 1HWWA 1O7DB 3G9GA 1TQVA 3GI7A 2D1LA 1GNTA 3BUQA 2PY6A 3CKDA 3DPQA 3DX2A 4EZYA 4NPHA 1DKZA 2YLLA 1WDZA 4EZSA 4EZPA 1Y2OA 2OBMA 1U00A 4WV7A 1PS3A 4MQDA 2MI7A 1R33A 2OW6A 2WYIA 4E3CA 4IW0A 4R5JA 4ILIA 2Z0OA 3UITA 3EJUA 3O3OB 1O7DC 1LQ7A 1E9VA 2GA9D 3B52X 4EZOA 4UDYX 2YL8A 3C7NB 1URUA 2QKWA 3C7NA 2YL9A 3OK8A 4JL9A 3OHXM 2F1BA 3DX4A 4IM3A 4EZTA 4JWDA 3SBTB 2YIVX 3DPOA 1TQWA 3I04A 4EZVA 2KHOA 3ACOA 1CKRA 4EZRA 4EZQA 3EJTA 2ALWA 2F1AA 3BVWA 1OA1A 2NCZA 2JNSA 4NQIA 4F00A 3DQGA 4EZZA 1GN9A 2F7RA 1SU6A 2ELBA 1X04A 4AZGA 2QXLA 3D4ZA 1SU8A 4F01A 4EZWA 2X3WA 2Z0VA 1W9MA 3EJRA 1ZYLA 3BUPA 1DKXA 4IWOA 4AZIA 4NSWA 3HAIA 3DYTA 3H0XA 4IWQA 2F7QA 3T4AG 4WPEA 2QFFA 4I43A 2N3KA 4DCNC 3FD9A 3CV5A 4AZ7A 3HAJA 1SUFA 1TQUA 3BVVA 3A98A 3ERCC 2YI8A 3ZEFA 4BNEA 2Z8YA 1E2UA 3BUIA 3CZSA 3DPPA 4FZSA 4I1QA
chains in the Genus database with same CATH topology
1DKYA 3OHXM 5TKYA 2YIAA 4G6QA 4EZNA 4IM2A 4JNEA 4IM3A 4EZTA 4JWDA 3DOBA 4R5IA 4FL9A 2EWFA 3B51X 2BPRA 3SBTB 5FIGA 1YUWA 3T49A 7HSCA 2LM0A 3QA8A 4JWEA 2YIVX 2ND1A 3DPOA 3T47A 1OAOA 2RT6A 3VEAA 4HR1B 3F7WA 3KAWA 3ER9B 3I04A 3N8EA 4E81A 4EZVA 4IWPA 2OP6A 2KHOA 4H6IA 4KIKB 3ER8C 4KIKA 4EZRA 1CKRA 4EZQA 4UDXX 1OA1A 2GAFD 2NCZA 2JNSA 2ND0A 3B53X 4JN4A 1OA0A 4F00A 3DQGA 3T46A 3VKHA 2EX3B 4HYBA 3RV1A 4JLCA 4EZZA 1GN9A 1SU6A 1DG4A 3I01A 3LMFA 4HY9A 1GNLA 2QXLA 4JNFA 4R5GA 4ILGA 5FLEX 3VEBA 4EZUA 4F01A 1SU8A 4HR1A 1MJGA 1BPRA 4EZWA 3O3MB 3KAVA 1W9MA 4WV5A 1JQKA 5E84A 4JWIA 1ZYLA 3GI7A 4ILHB 2YIBA 3I39X 1DKXA 1SU7A 1GNTA 4IWOA 1Q5LA 2PY6A 3D2EA 3D2FA 4H6HA 3DPQA 2V7YA 4EZYA 4NPHA 4JWCA 1DKZA 4EZSA 3H0XA 4EZPA 4IWQA 4FM3A 2OBMA 3KDRA 3SBSA 1U00A 3OWGA 3O3NB 3T4AG 4WV7A 2QFFA 4I43A 2N3KA 4B9QA 4MQDA 3FD9A 4E3CA 4IW0A 4R5JA 4ILIA 3UITA 4D8JA 3O3OB 3RV0A 1SUFA 4PO2A 4R5LA 1E9VA 2GA9D 3L3OM 3QNJA 4M0MA 2WINM 2X5CA 4IM0A 1E1DA 2YI9A 3A98A 3ERCC 3B52X 3T48A 4EZOA 2YI8A 3ZEFA 1UPXA 4EZXA 4R5KA 2Z8YA 4UDYX 1E2UA 3ZEDA 3C7NB 3C7NA 2OBLA 3DPPA 4JL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DKY A;  3OHX M;  4JWI A;  4R5J A;  5TKY A;  4JN4 A;  4EZN A;  4F00 A;  3DQG A;  3T46 A;  4HYB A;  4JNE A;  4EZZ A;  1DKX A;  1DG4 A;  4PO2 A;  4EZT A;  4JWD A;  4R5L A;  4R5I A;  1Q5L A;  3DOB A;  4FL9 A;  3L3O M;  2BPR A;  3QNJ A;  4HY9 A;  3T49 A;  1YUW A;  2WIN M;  7HSC A;  3D2E A;  4JWE A;  2QXL A;  3D2F A;  3DPO A;  4H6H A;  4JNF A;  3DPQ A;  4R5G A;  3T47 A;  3T48 A;  4EZY A;  4EZO A;  2V7Y A;  4JWC A;  4EZU A;  1DKZ A;  4F01 A;  4EZS A;  3H0X A;  4EZX A;  4R5K A;  4EZP A;  1BPR A;  3N8E A;  4EZW A;  4E81 A;  4EZV A;  3C7N B;  3C7N A;  1U00 A;  3DPP A;  2OP6 A;  4WV5 A;  3T4A G;  4WV7 A;  2KHO A;  4H6I A;  2QFF A;  5E84 A;  4B9Q A;  4EZR A;  1CKR A;  4EZQ A; 
#chains in the Genus database with same CATH topology
 1DKY A;  1HXK A;  2YIA A;  1QWU A;  2C08 A;  4JNE A;  4R5I A;  4AVM A;  3B51 X;  4JWE A;  2Z0N A;  3T47 A;  3DDF A;  3F7W A;  1X03 A;  4IWP A;  2EX3 B;  3Q84 A;  4HYB A;  4JLC A;  3RV1 A;  2Q12 A;  1I49 A;  3L3P A;  3ABH A;  4HY9 A;  4JNF A;  2V0O A;  3VEB A;  4EZU A;  3D50 A;  1I4D A;  2F7P A;  5E84 A;  2YLA A;  3D51 A;  3BVT A;  4ILH B;  3CAZ A;  3I2W A;  3BUD A;  1Q5L A;  2F18 A;  3Q0K A;  3D2E A;  3D2F A;  3BUB A;  3QNI A;  2FYV A;  4JWC A;  4FM3 A;  3KDR A;  3O3N B;  2Q13 A;  4ATM A;  1TQS A;  2OZN B;  1QWN A;  4PO2 A;  2GF4 A;  2RAJ A;  3QNJ A;  2X5C A;  4FZP A;  2EFK A;  4EZX A;  4R5K A;  3ZED A;  3DX0 A;  5TKY A;  1QX1 A;  4G6Q A;  5C5B A;  5C5B B;  1ZWW A;  3QWE A;  4IM2 A;  3M3W A;  2EWF A;  2BPR A;  7HSC A;  5FIG A;  3T49 A;  3QA8 A;  4WPC A;  2RT6 A;  3VEA A;  4HR1 B;  2LXY A;  3N8E A;  2OP6 A;  4H6I A;  4KIK B;  3PLT A;  4FZO A;  4KIK A;  2EFL A;  4UDX X;  2YKT A;  2RAI A;  3B53 X;  3VKH A;  4AZH A;  1DG4 A;  4R5G A;  4ILG A;  3CVR A;  1BPR A;  2X3V A;  3O3M B;  2PMR A;  5KBP A;  3SOG A;  2WYH A;  3BVX A;  4JWI A;  2YIB A;  3I39 X;  3EJP A;  4AZ5 A;  1SU7 A;  2X3X A;  3RPM A;  1HTY A;  1TQT A;  2F7O A;  4H6H A;  3DX3 A;  2V7Y A;  1R34 A;  2ZXQ A;  2D4C A;  3DX1 A;  4AZC B;  4AZC A;  3SBS A;  3OWG A;  3QE6 A;  4B9Q A;  3LLL A;  3EJS A;  3D4Y A;  4D8J A;  3BLB A;  3RV0 A;  2O0I 1;  2JNK A;  4R5L A;  1I4L A;  3L3O M;  4AZ6 A;  2YL6 A;  4M0M A;  2WIN M;  4IM0 A;  1E1D A;  2YI9 A;  2RAK A;  3T48 A;  2OO2 A;  1UPX A;  3LVT A;  2OBL A;  3SYV A;  2FIC A;  4DYL A;  3CZN A;  2OW7 A;  4H8S A;  4EZN A;  4AKV A;  1YWM A;  3BVU A;  3DOB A;  4FL9 A;  1R5E A;  1YUW A;  3D52 A;  2LM0 A;  2ND1 A;  1OAO A;  1I4T A;  3EJQ A;  3KAW A;  3ER9 B;  4E81 A;  3ER8 C;  2GAF D;  4JN4 A;  2ND0 A;  1OA0 A;  4AZB A;  3T46 A;  2YL5 A;  3I01 A;  3LMF A;  1GNL A;  3HAH A;  5FLE X;  4HR1 A;  1MJG A;  3KAV A;  3DDG A;  4WV5 A;  1JQK A;  1HWW A;  1O7D B;  3G9G A;  1TQV A;  3GI7 A;  2D1L A;  1GNT A;  3BUQ A;  2PY6 A;  3CKD A;  3DPQ A;  3DX2 A;  4EZY A;  4NPH A;  1DKZ A;  2YLL A;  1WDZ A;  4EZS A;  4EZP A;  1Y2O A;  2OBM A;  1U00 A;  4WV7 A;  1PS3 A;  4MQD A;  2MI7 A;  1R33 A;  2OW6 A;  2WYI A;  4E3C A;  4IW0 A;  4R5J A;  4ILI A;  2Z0O A;  3UIT A;  3EJU A;  3O3O B;  1O7D C;  1LQ7 A;  1E9V A;  2GA9 D;  3B52 X;  4EZO A;  4UDY X;  2YL8 A;  3C7N B;  1URU A;  2QKW A;  3C7N A;  2YL9 A;  3OK8 A;  4JL9 A;  3OHX M;  2F1B A;  3DX4 A;  4IM3 A;  4EZT A;  4JWD A;  3SBT B;  2YIV X;  3DPO A;  1TQW A;  3I04 A;  4EZV A;  2KHO A;  3ACO A;  1CKR A;  4EZR A;  4EZQ A;  3EJT A;  2ALW A;  2F1A A;  3BVW A;  1OA1 A;  2NCZ A;  2JNS A;  4NQI A;  4F00 A;  3DQG A;  4EZZ A;  1GN9 A;  2F7R A;  1SU6 A;  2ELB A;  1X04 A;  4AZG A;  2QXL A;  3D4Z A;  1SU8 A;  4F01 A;  4EZW A;  2X3W A;  2Z0V A;  1W9M A;  3EJR A;  1ZYL A;  3BUP A;  1DKX A;  4IWO A;  4AZI A;  4NSW A;  3HAI A;  3DYT A;  3H0X A;  4IWQ A;  2F7Q A;  3T4A G;  4WPE A;  2QFF A;  4I43 A;  2N3K A;  4DCN C;  3FD9 A;  3CV5 A;  4AZ7 A;  3HAJ A;  1SUF A;  1TQU A;  3BVV A;  3A98 A;  3ERC C;  2YI8 A;  3ZEF A;  4BNE A;  2Z8Y A;  1E2U A;  3BUI A;  3CZS A;  3DPP A;  4FZS A;  4I1Q A; 
#chains in the Genus database with same CATH homology
 1DKY A;  3OHX M;  5TKY A;  2YIA A;  4G6Q A;  4EZN A;  4IM2 A;  4JNE A;  4IM3 A;  4EZT A;  4JWD A;  3DOB A;  4R5I A;  4FL9 A;  2EWF A;  3B51 X;  2BPR A;  3SBT B;  5FIG A;  1YUW A;  3T49 A;  7HSC A;  2LM0 A;  3QA8 A;  4JWE A;  2YIV X;  2ND1 A;  3DPO A;  3T47 A;  1OAO A;  2RT6 A;  3VEA A;  4HR1 B;  3F7W A;  3KAW A;  3ER9 B;  3I04 A;  3N8E A;  4E81 A;  4EZV A;  4IWP A;  2OP6 A;  2KHO A;  4H6I A;  4KIK B;  3ER8 C;  4KIK A;  4EZR A;  1CKR A;  4EZQ A;  4UDX X;  1OA1 A;  2GAF D;  2NCZ A;  2JNS A;  2ND0 A;  3B53 X;  4JN4 A;  1OA0 A;  4F00 A;  3DQG A;  3T46 A;  3VKH A;  2EX3 B;  4HYB A;  3RV1 A;  4JLC A;  4EZZ A;  1GN9 A;  1SU6 A;  1DG4 A;  3I01 A;  3LMF A;  4HY9 A;  1GNL A;  2QXL A;  4JNF A;  4R5G A;  4ILG A;  5FLE X;  3VEB A;  4EZU A;  4F01 A;  1SU8 A;  4HR1 A;  1MJG A;  1BPR A;  4EZW A;  3O3M B;  3KAV A;  1W9M A;  4WV5 A;  1JQK A;  5E84 A;  4JWI A;  1ZYL A;  3GI7 A;  4ILH B;  2YIB A;  3I39 X;  1DKX A;  1SU7 A;  1GNT A;  4IWO A;  1Q5L A;  2PY6 A;  3D2E A;  3D2F A;  4H6H A;  3DPQ A;  2V7Y A;  4EZY A;  4NPH A;  4JWC A;  1DKZ A;  4EZS A;  3H0X A;  4EZP A;  4IWQ A;  4FM3 A;  2OBM A;  3KDR A;  3SBS A;  1U00 A;  3OWG A;  3O3N B;  3T4A G;  4WV7 A;  2QFF A;  4I43 A;  2N3K A;  4B9Q A;  4MQD A;  3FD9 A;  4E3C A;  4IW0 A;  4R5J A;  4ILI A;  3UIT A;  4D8J A;  3O3O B;  3RV0 A;  1SUF A;  4PO2 A;  4R5L A;  1E9V A;  2GA9 D;  3L3O M;  3QNJ A;  4M0M A;  2WIN M;  2X5C A;  4IM0 A;  1E1D A;  2YI9 A;  3A98 A;  3ERC C;  3B52 X;  3T48 A;  4EZO A;  2YI8 A;  3ZEF A;  1UPX A;  4EZX A;  4R5K A;  2Z8Y A;  4UDY X;  1E2U A;  3ZED A;  3C7N B;  3C7N A;  2OBL A;  3DPP A;  4JL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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