4EZUA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pr-bombesin in space group i222
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
216
structure length
216
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural studies of DnaK in complex with proline rich antimicrobial peptides reveal two different peptide binding modes
rcsb
source organism Escherichia coli
total genus 69
structure length 216
sequence length 216
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezuA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezuA01
3DPOA 4JWDA 3T46A 4JNFA 4EZVA 3DPPA 2WINM 5E84A 4F00A 3C7NB 1DKYA 3DOBA 3D2EA 3OHXM 1DKXA 4R5KA 3DPQA 3T48A 4PO2A 4EZWA 1BPRA 3H0XA 3L3OM 7HSCA 3C7NA 3DQGA 1Q5LA 1DKZA 3T49A 5TKYA 3N8EA 4R5LA 2QFFA 4JNEA 4F01A 4EZQA 1U00A 4B9QA 2QXLA 2V7YA 1CKRA 4JWCA 4HY9A 4EZOA 4WV5A 4EZNA 4EZYA 4JWEA 3T47A 4R5IA 4R5JA 4E81A 4JWIA 4EZRA 2OP6A 4H6HA 4R5GA 4WV7A 3T4AG 4FL9A 1DG4A 2BPRA 4EZZA 4EZUA 4EZPA 4EZXA 4EZSA 4H6IA 4EZTA 4JN4A 4HYBA 3QNJA 3D2FA 2KHOA 1YUWA
chains in the Genus database with same CATH superfamily
2WYHA 3DPPA 3EJRA 2Q13A 1TQTA 2X3XA 2QFFA 2LXYA 4JWCA 4IM2A 2N3KA 2FYVA 3T4AG 4NSWA 3D4YA 3OK8A 1I4LA 4NPHA 3DPOA 3CV5A 1TQVA 4F00A 3UITA 3F7WA 1DKXA 3D4ZA 3L3OM 2JNKA 3ER9B 3VKHA 3PLTA 3RV1A 4AZCB 2EWFA 2D4CA 4F01A 5FIGA 2EFKA 1QX1A 1R5EA 3OWGA 3SYVA 4E81A 1MJGA 1QWNA 3I04A 1E1DA 2F7RA 3HAHA 3L3PA 2PY6A 2O0I1 4WPCA 1I4TA 5E84A 2MI7A 3BVTA 2RAJA 2FICA 1Q5LA 3RPMA 5FLEX 2QXLA 4ILHB 1SU6A 4EZRA 2PMRA 3ACOA 3EJPA 2YI8A 3D2FA 4HR1B 2X3WA 2RT6A 2WINM 2V0OA 1GN9A 4AZ7A 2ND0A 4M0MA 3O3NB 4E3CA 3DX4A 2F7PA 1Y2OA 2ND1A 3QE6A 4JL9A 1TQSA 2D1LA 4R5JA 2GAFD 2JNSA 2NCZA 1HWWA 4JLCA 4HYBA 3BVWA 2GF4A 1HTYA 3EJTA 1URUA 4AZ6A 3VEAA 4EZQA 1QWUA 1ZYLA 3D52A 2ALWA 2OW6A 3ABHA 3BLBA 2QKWA 1YUWA 4AZ5A 3Q84A 4AZGA 2YL9A 1SU8A 2GA9D 1DKZA 4AKVA 3DX0A 4EZNA 2X3VA 2Z0VA 4G6QA 4FM3A 3GI7A 1DG4A 2BPRA 4EZXA 2F1BA 3SBSA 4MQDA 3EJSA 3Q0KA 3HAJA 2YLAA 3LVTA 1DKYA 3D2EA 4IWOA 4D8JA 2ZXQA 4JNEA 4FZOA 2F18A 4WV5A 3O3MB 2RAKA 4AZCA 2YIVX 3I39X 3CAZA 4WV7A 3ZEFA 2YKTA 3DDFA 4EZTA 4IWPA 1WDZA 1LQ7A 3OHXM 4PO2A 3CVRA 5C5BB 3D50A 3DX1A 2YL6A 2Z0NA 4JWEA 2F7OA 4IW0A 3KAVA 5KBPA 1O7DB 1HXKA 1TQWA 4HR1A 1R34A 2YIBA 1I49A 4H8SA 3KDRA 2OO2A 4EZUA 3QNIA 4AZIA 3ERCC 2LM0A 3D51A 4JWDA 3O3OB 3C7NB 1ZWWA 4I1QA 3BVUA 3B53X 3C7NA 3CZSA 2F7QA 3N8EA 2OW7A 2YLLA 4DCNC 4R5IA 4H6HA 3BUQA 1GNLA 4ATMA 1SUFA 2YL8A 4KIKB 1GNTA 1R33A 2KHOA 1E2UA 3ZEDA 4KIKA 1X04A 3T48A 4AZHA 4NQIA 3BUBA 2OZNB 1YWMA 4ILGA 4IWQA 3BUIA 4B9QA 3BUPA 3I01A 1I4DA 4FL9A 1OAOA 4UDXX 3A98A 2YIAA 3I2WA 3DYTA 1SU7A 4JNFA 3DOBA 1OA1A 3FD9A 2X5CA 3DDGA 3T49A 4R5LA 4DYLA 3EJQA 1U00A 4AVMA 1CKRA 3B51X 1UPXA 4JWIA 2Z8YA 4EZSA 4ILIA 1X03A 3KAWA 3HAIA 4EZVA 3B52X 4FZPA 1PS3A 7HSCA 4EZWA 3DX3A 2EFLA 3BVXA 4UDYX 5C5BA 4I43A 3T47A 1JQKA 2OP6A 2RAIA 4H6IA 3DX2A 2YI9A 4BNEA 3DPQA 1BPRA 3BVVA 2YL5A 2V7YA 3G9GA 4EZZA 4EZPA 3M3WA 4JN4A 3QNJA 4FZSA 3T46A 3CKDA 3SBTB 4R5KA 3H0XA 3SOGA 3DQGA 2Z0OA 2WYIA 1TQUA 2Q12A 4EZOA 2OBMA 2OBLA 4AZBA 4IM3A 3CZNA 3ER8C 3QA8A 4IM0A 1O7DC 2F1AA 3RV0A 5TKYA 2ELBA 2EX3B 3LLLA 3LMFA 3QWEA 4HY9A 4WPEA 4EZYA 3EJUA 3VEBA 4R5GA 1E9VA 1W9MA 1OA0A 2C08A 3BUDA
chains in the Genus database with same CATH topology
3KAWA 4EZVA 3DPPA 3B52X 4HR1A 7HSCA 4EZWA 3VEAA 2QFFA 4EZQA 1ZYLA 4JWCA 4IM2A 4UDYX 4I43A 2N3KA 3T47A 2YIBA 1JQKA 2OP6A 3KDRA 3T4AG 4EZUA 4H6IA 3ERCC 2LM0A 1YUWA 4NPHA 3DPOA 4JWDA 2YI9A 3O3OB 3C7NB 4F00A 3UITA 3F7WA 1DKXA 3B53X 3DPQA 1SU8A 1BPRA 3L3OM 2GA9D 3C7NA 3ER9B 3VKHA 3RV1A 1DKZA 2EWFA 3N8EA 4F01A 5FIGA 2V7YA 4EZNA 3OWGA 4R5IA 4E81A 4G6QA 4FM3A 4H6HA 1MJGA 3GI7A 1DG4A 3I04A 2BPRA 1GNLA 4EZZA 1E1DA 1SUFA 4EZPA 4EZXA 4JN4A 4KIKB 3QNJA 1GNTA 3SBSA 2KHOA 4MQDA 1E2UA 2PY6A 3T46A 3ZEDA 4KIKA 5E84A 3SBTB 1DKYA 3D2EA 4R5KA 3T48A 3H0XA 4IWOA 3DQGA 1Q5LA 4D8JA 4ILGA 4IWQA 4JNEA 5FLEX 4B9QA 2QXLA 4ILHB 4WV5A 4EZOA 1SU6A 3O3MB 2OBMA 2OBLA 2YIVX 3I39X 3I01A 4EZRA 4WV7A 3ZEFA 4IM3A 4FL9A 1OAOA 4UDXX 4EZTA 3A98A 2YI8A 2YIAA 4IWPA 3D2FA 4HR1B 3ER8C 1SU7A 2RT6A 4JNFA 2WINM 3QA8A 3DOBA 1GN9A 3OHXM 4IM0A 4PO2A 1OA1A 2ND0A 4M0MA 3O3NB 4E3CA 3FD9A 2X5CA 3RV0A 3T49A 5TKYA 4R5LA 2EX3B 2ND1A 1U00A 3LMFA 4JL9A 1CKRA 4HY9A 3B51X 4EZYA 4JWEA 3VEBA 1UPXA 4R5JA 4JWIA 2GAFD 2JNSA 4IW0A 1E9VA 2NCZA 4R5GA 1W9MA 1OA0A 2Z8YA 4EZSA 3KAVA 4JLCA 4ILIA 4HYBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DPO A;  4JWD A;  3T46 A;  4JNF A;  4EZV A;  3DPP A;  2WIN M;  5E84 A;  4F00 A;  3C7N B;  1DKY A;  3DOB A;  3D2E A;  3OHX M;  1DKX A;  4R5K A;  3DPQ A;  3T48 A;  4PO2 A;  4EZW A;  1BPR A;  3H0X A;  3L3O M;  7HSC A;  3C7N A;  3DQG A;  1Q5L A;  1DKZ A;  3T49 A;  5TKY A;  3N8E A;  4R5L A;  2QFF A;  4JNE A;  4F01 A;  4EZQ A;  1U00 A;  4B9Q A;  2QXL A;  2V7Y A;  1CKR A;  4JWC A;  4HY9 A;  4EZO A;  4WV5 A;  4EZN A;  4EZY A;  4JWE A;  3T47 A;  4R5I A;  4R5J A;  4E81 A;  4JWI A;  4EZR A;  2OP6 A;  4H6H A;  4R5G A;  4WV7 A;  3T4A G;  4FL9 A;  1DG4 A;  2BPR A;  4EZZ A;  4EZU A;  4EZP A;  4EZX A;  4EZS A;  4H6I A;  4EZT A;  4JN4 A;  4HYB A;  3QNJ A;  3D2F A;  2KHO A;  1YUW A; 
#chains in the Genus database with same CATH topology
 2WYH A;  3DPP A;  3EJR A;  2Q13 A;  1TQT A;  2X3X A;  2QFF A;  2LXY A;  4JWC A;  4IM2 A;  2N3K A;  2FYV A;  3T4A G;  4NSW A;  3D4Y A;  3OK8 A;  1I4L A;  4NPH A;  3DPO A;  3CV5 A;  1TQV A;  4F00 A;  3UIT A;  3F7W A;  1DKX A;  3D4Z A;  3L3O M;  2JNK A;  3ER9 B;  3VKH A;  3PLT A;  3RV1 A;  4AZC B;  2EWF A;  2D4C A;  4F01 A;  5FIG A;  2EFK A;  1QX1 A;  1R5E A;  3OWG A;  3SYV A;  4E81 A;  1MJG A;  1QWN A;  3I04 A;  1E1D A;  2F7R A;  3HAH A;  3L3P A;  2PY6 A;  2O0I 1;  4WPC A;  1I4T A;  5E84 A;  2MI7 A;  3BVT A;  2RAJ A;  2FIC A;  1Q5L A;  3RPM A;  5FLE X;  2QXL A;  4ILH B;  1SU6 A;  4EZR A;  2PMR A;  3ACO A;  3EJP A;  2YI8 A;  3D2F A;  4HR1 B;  2X3W A;  2RT6 A;  2WIN M;  2V0O A;  1GN9 A;  4AZ7 A;  2ND0 A;  4M0M A;  3O3N B;  4E3C A;  3DX4 A;  2F7P A;  1Y2O A;  2ND1 A;  3QE6 A;  4JL9 A;  1TQS A;  2D1L A;  4R5J A;  2GAF D;  2JNS A;  2NCZ A;  1HWW A;  4JLC A;  4HYB A;  3BVW A;  2GF4 A;  1HTY A;  3EJT A;  1URU A;  4AZ6 A;  3VEA A;  4EZQ A;  1QWU A;  1ZYL A;  3D52 A;  2ALW A;  2OW6 A;  3ABH A;  3BLB A;  2QKW A;  1YUW A;  4AZ5 A;  3Q84 A;  4AZG A;  2YL9 A;  1SU8 A;  2GA9 D;  1DKZ A;  4AKV A;  3DX0 A;  4EZN A;  2X3V A;  2Z0V A;  4G6Q A;  4FM3 A;  3GI7 A;  1DG4 A;  2BPR A;  4EZX A;  2F1B A;  3SBS A;  4MQD A;  3EJS A;  3Q0K A;  3HAJ A;  2YLA A;  3LVT A;  1DKY A;  3D2E A;  4IWO A;  4D8J A;  2ZXQ A;  4JNE A;  4FZO A;  2F18 A;  4WV5 A;  3O3M B;  2RAK A;  4AZC A;  2YIV X;  3I39 X;  3CAZ A;  4WV7 A;  3ZEF A;  2YKT A;  3DDF A;  4EZT A;  4IWP A;  1WDZ A;  1LQ7 A;  3OHX M;  4PO2 A;  3CVR A;  5C5B B;  3D50 A;  3DX1 A;  2YL6 A;  2Z0N A;  4JWE A;  2F7O A;  4IW0 A;  3KAV A;  5KBP A;  1O7D B;  1HXK A;  1TQW A;  4HR1 A;  1R34 A;  2YIB A;  1I49 A;  4H8S A;  3KDR A;  2OO2 A;  4EZU A;  3QNI A;  4AZI A;  3ERC C;  2LM0 A;  3D51 A;  4JWD A;  3O3O B;  3C7N B;  1ZWW A;  4I1Q A;  3BVU A;  3B53 X;  3C7N A;  3CZS A;  2F7Q A;  3N8E A;  2OW7 A;  2YLL A;  4DCN C;  4R5I A;  4H6H A;  3BUQ A;  1GNL A;  4ATM A;  1SUF A;  2YL8 A;  4KIK B;  1GNT A;  1R33 A;  2KHO A;  1E2U A;  3ZED A;  4KIK A;  1X04 A;  3T48 A;  4AZH A;  4NQI A;  3BUB A;  2OZN B;  1YWM A;  4ILG A;  4IWQ A;  3BUI A;  4B9Q A;  3BUP A;  3I01 A;  1I4D A;  4FL9 A;  1OAO A;  4UDX X;  3A98 A;  2YIA A;  3I2W A;  3DYT A;  1SU7 A;  4JNF A;  3DOB A;  1OA1 A;  3FD9 A;  2X5C A;  3DDG A;  3T49 A;  4R5L A;  4DYL A;  3EJQ A;  1U00 A;  4AVM A;  1CKR A;  3B51 X;  1UPX A;  4JWI A;  2Z8Y A;  4EZS A;  4ILI A;  1X03 A;  3KAW A;  3HAI A;  4EZV A;  3B52 X;  4FZP A;  1PS3 A;  7HSC A;  4EZW A;  3DX3 A;  2EFL A;  3BVX A;  4UDY X;  5C5B A;  4I43 A;  3T47 A;  1JQK A;  2OP6 A;  2RAI A;  4H6I A;  3DX2 A;  2YI9 A;  4BNE A;  3DPQ A;  1BPR A;  3BVV A;  2YL5 A;  2V7Y A;  3G9G A;  4EZZ A;  4EZP A;  3M3W A;  4JN4 A;  3QNJ A;  4FZS A;  3T46 A;  3CKD A;  3SBT B;  4R5K A;  3H0X A;  3SOG A;  3DQG A;  2Z0O A;  2WYI A;  1TQU A;  2Q12 A;  4EZO A;  2OBM A;  2OBL A;  4AZB A;  4IM3 A;  3CZN A;  3ER8 C;  3QA8 A;  4IM0 A;  1O7D C;  2F1A A;  3RV0 A;  5TKY A;  2ELB A;  2EX3 B;  3LLL A;  3LMF A;  3QWE A;  4HY9 A;  4WPE A;  4EZY A;  3EJU A;  3VEB A;  4R5G A;  1E9V A;  1W9M A;  1OA0 A;  2C08 A;  3BUD A; 
#chains in the Genus database with same CATH homology
 3KAW A;  4EZV A;  3DPP A;  3B52 X;  4HR1 A;  7HSC A;  4EZW A;  3VEA A;  2QFF A;  4EZQ A;  1ZYL A;  4JWC A;  4IM2 A;  4UDY X;  4I43 A;  2N3K A;  3T47 A;  2YIB A;  1JQK A;  2OP6 A;  3KDR A;  3T4A G;  4EZU A;  4H6I A;  3ERC C;  2LM0 A;  1YUW A;  4NPH A;  3DPO A;  4JWD A;  2YI9 A;  3O3O B;  3C7N B;  4F00 A;  3UIT A;  3F7W A;  1DKX A;  3B53 X;  3DPQ A;  1SU8 A;  1BPR A;  3L3O M;  2GA9 D;  3C7N A;  3ER9 B;  3VKH A;  3RV1 A;  1DKZ A;  2EWF A;  3N8E A;  4F01 A;  5FIG A;  2V7Y A;  4EZN A;  3OWG A;  4R5I A;  4E81 A;  4G6Q A;  4FM3 A;  4H6H A;  1MJG A;  3GI7 A;  1DG4 A;  3I04 A;  2BPR A;  1GNL A;  4EZZ A;  1E1D A;  1SUF A;  4EZP A;  4EZX A;  4JN4 A;  4KIK B;  3QNJ A;  1GNT A;  3SBS A;  2KHO A;  4MQD A;  1E2U A;  2PY6 A;  3T46 A;  3ZED A;  4KIK A;  5E84 A;  3SBT B;  1DKY A;  3D2E A;  4R5K A;  3T48 A;  3H0X A;  4IWO A;  3DQG A;  1Q5L A;  4D8J A;  4ILG A;  4IWQ A;  4JNE A;  5FLE X;  4B9Q A;  2QXL A;  4ILH B;  4WV5 A;  4EZO A;  1SU6 A;  3O3M B;  2OBM A;  2OBL A;  2YIV X;  3I39 X;  3I01 A;  4EZR A;  4WV7 A;  3ZEF A;  4IM3 A;  4FL9 A;  1OAO A;  4UDX X;  4EZT A;  3A98 A;  2YI8 A;  2YIA A;  4IWP A;  3D2F A;  4HR1 B;  3ER8 C;  1SU7 A;  2RT6 A;  4JNF A;  2WIN M;  3QA8 A;  3DOB A;  1GN9 A;  3OHX M;  4IM0 A;  4PO2 A;  1OA1 A;  2ND0 A;  4M0M A;  3O3N B;  4E3C A;  3FD9 A;  2X5C A;  3RV0 A;  3T49 A;  5TKY A;  4R5L A;  2EX3 B;  2ND1 A;  1U00 A;  3LMF A;  4JL9 A;  1CKR A;  4HY9 A;  3B51 X;  4EZY A;  4JWE A;  3VEB A;  1UPX A;  4R5J A;  4JWI A;  2GAF D;  2JNS A;  4IW0 A;  1E9V A;  2NCZ A;  4R5G A;  1W9M A;  1OA0 A;  2Z8Y A;  4EZS A;  3KAV A;  4JLC A;  4ILI A;  4HYB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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