4F0VA

Crystal structure of type effector tse1 from pseudomonas aeruginousa
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
152
structure length
152
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Putative uncharacterized protein
publication title Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 47
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2012-05-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4f0vA00
4F0WA 4FQBA 2IO7A 4OLKA 3PVQA 3O98A 4F4MA 3M1UA 2IO9A 3I86A 2VOBA 3PBCA 4Q4NA 4HZ9A 2FG0A 2K1GA 4FGEA 4R0KA 4EQ8A 4HPEA 2LRJA 4F0VA 4FGIA 4JXBA 3A2ZA 4Q4GX 2EVRA 3NE0A 2IOAA 3KW0A 3A2YA 3GT2A 4Q4TA 4CSHA 2XIVA 3VPJA 4CGKA 4CT3A 4EOBA 3PBIA 2VPMA 4LJ1A 4FDYA 3VPIA 4FGDA 4FQAA 4HZBA 3S0QA 3H41A 2VPSA 4EQAA 2HBWA 3NPFA 2IOBA 3A30A 2IF6A 2IO8A 2K3AA
chains in the Genus database with same CATH superfamily
4J30A 4F0WA 4FQBA 2IO7A 4JURA 3PVQA 4OLKA 3O98A 4F4MA 3M1UA 2IO9A 3I86A 4HFKA 2VOBA 3PBCA 3EBQA 4Q4NA 4HZ9A 2FG0A 2K1GA 4FGEA 4R0KA 4EQ8A 4HPEA 2LRJA 4F0VA 4FGIA 4JXBA 3A2ZA 4Q4GX 2EVRA 3NE0A 4HFLA 2IOAA 3KW0A 3A2YA 3GT2A 4Q4TA 4CSHA 2XIVA 3VPJA 4HFFA 4CGKA 4CT3A 4EOBA 3PBIA 2WP7A 2VPMA 4LJ1A 4FDYA 3VPIA 4FGDA 4FQAA 4HZBA 3S0QA 3H41A 2VPSA 4EQAA 2HBWA 3NPFA 2IOBA 4J32A 3A30A 2IF6A 2IO8A 2K3AA
chains in the Genus database with same CATH topology
4F0WA 4FQBA 2IO7A 4OLKA 3PVQA 3O98A 4F4MA 3M1UA 2IO9A 3I86A 2VOBA 3PBCA 4Q4NA 4HZ9A 2FG0A 2K1GA 4FGEA 4R0KA 4EQ8A 4HPEA 2LRJA 4F0VA 4FGIA 4JXBA 3A2ZA 4Q4GX 2EVRA 3NE0A 2IOAA 3KW0A 3A2YA 3GT2A 4Q4TA 4CSHA 2XIVA 3VPJA 4CGKA 4CT3A 4EOBA 3PBIA 2VPMA 4LJ1A 4FDYA 3VPIA 4FGDA 4FQAA 4HZBA 3S0QA 3H41A 2VPSA 4EQAA 2HBWA 3NPFA 2IOBA 3A30A 2IF6A 2IO8A 2K3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F0W A;  4FQB A;  2IO7 A;  4OLK A;  3PVQ A;  3O98 A;  4F4M A;  3M1U A;  2IO9 A;  3I86 A;  2VOB A;  3PBC A;  4Q4N A;  4HZ9 A;  2FG0 A;  2K1G A;  4FGE A;  4R0K A;  4EQ8 A;  4HPE A;  2LRJ A;  4F0V A;  4FGI A;  4JXB A;  3A2Z A;  4Q4G X;  2EVR A;  3NE0 A;  2IOA A;  3KW0 A;  3A2Y A;  3GT2 A;  4Q4T A;  4CSH A;  2XIV A;  3VPJ A;  4CGK A;  4CT3 A;  4EOB A;  3PBI A;  2VPM A;  4LJ1 A;  4FDY A;  3VPI A;  4FGD A;  4FQA A;  4HZB A;  3S0Q A;  3H41 A;  2VPS A;  4EQA A;  2HBW A;  3NPF A;  2IOB A;  3A30 A;  2IF6 A;  2IO8 A;  2K3A A; 
#chains in the Genus database with same CATH topology
 4J30 A;  4F0W A;  4FQB A;  2IO7 A;  4JUR A;  3PVQ A;  4OLK A;  3O98 A;  4F4M A;  3M1U A;  2IO9 A;  3I86 A;  4HFK A;  2VOB A;  3PBC A;  3EBQ A;  4Q4N A;  4HZ9 A;  2FG0 A;  2K1G A;  4FGE A;  4R0K A;  4EQ8 A;  4HPE A;  2LRJ A;  4F0V A;  4FGI A;  4JXB A;  3A2Z A;  4Q4G X;  2EVR A;  3NE0 A;  4HFL A;  2IOA A;  3KW0 A;  3A2Y A;  3GT2 A;  4Q4T A;  4CSH A;  2XIV A;  3VPJ A;  4HFF A;  4CGK A;  4CT3 A;  4EOB A;  3PBI A;  2WP7 A;  2VPM A;  4LJ1 A;  4FDY A;  3VPI A;  4FGD A;  4FQA A;  4HZB A;  3S0Q A;  3H41 A;  2VPS A;  4EQA A;  2HBW A;  3NPF A;  2IOB A;  4J32 A;  3A30 A;  2IF6 A;  2IO8 A;  2K3A A; 
#chains in the Genus database with same CATH homology
 4F0W A;  4FQB A;  2IO7 A;  4OLK A;  3PVQ A;  3O98 A;  4F4M A;  3M1U A;  2IO9 A;  3I86 A;  2VOB A;  3PBC A;  4Q4N A;  4HZ9 A;  2FG0 A;  2K1G A;  4FGE A;  4R0K A;  4EQ8 A;  4HPE A;  2LRJ A;  4F0V A;  4FGI A;  4JXB A;  3A2Z A;  4Q4G X;  2EVR A;  3NE0 A;  2IOA A;  3KW0 A;  3A2Y A;  3GT2 A;  4Q4T A;  4CSH A;  2XIV A;  3VPJ A;  4CGK A;  4CT3 A;  4EOB A;  3PBI A;  2VPM A;  4LJ1 A;  4FDY A;  3VPI A;  4FGD A;  4FQA A;  4HZB A;  3S0Q A;  3H41 A;  2VPS A;  4EQA A;  2HBW A;  3NPF A;  2IOB A;  3A30 A;  2IF6 A;  2IO8 A;  2K3A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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