4FBDA

2.35 angstrom crystal structure of conserved hypothetical protein from toxoplasma gondii me49.
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
214
structure length
204
Chain Sequence
RPAPADLPLGLDPFCYSRISGVTKEEFLEKVNELVTRDAGIEFFQGYAPFCRHLYIPNFVGALPGSLPITADNEHLLRSGYIARRPNELPVLTRWFPMSYAKDALMPAAFLDLILYSREQIAKETAAESNTAVVIDPNAPAWSIIAVKAQNEKYSLPMAPITMLRNTLIEEGGSGVALDREAYKASVAYWKTHAIVMDKESSLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Putative uncharacterized protein
publication title 2.35 Angstrom Crystal Structure of Conserved Hypothetical Protein from Toxoplasma gondii ME49.
rcsb
source organism Toxoplasma gondii
total genus 43
structure length 204
sequence length 214
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.50 Alpha Beta 2-Layer Sandwich YaeB-like fold YaeB-like fold 4fbdA01
2PD0A 4FBDA
chains in the Genus database with same CATH superfamily
2OTRA 4MMGA 4MMJA 4NRNA 4FXIA 5IWHA 2PD0A 1WMIA 4Q2UB 4ML2A 4LS4A 4FXHA 2KC8A 3HI2B 1Z8MA 2DJHA 4FBDA 2A6SA 2A6QE 3G5OB 2DFXE 5CEGB 4LTTA 2FHZB 3AO9A 3BPQB 4PX8A 5CW7B 2KC9A 4FXED 3OEIC 5CZEB 2KHEA 4ML0B 3VJ7A 4YY3Y 4MCXB 1XQBA 5IXLA 3KXEA 5CZFC 2A6RA 4LSYA 2A8KA 4MCTB
chains in the Genus database with same CATH topology
2DFXE 3VJ7A 2FHZB 2PD0A 3AO9A 3HI2B 2A8KA 2DJHA 4FBDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PD0 A;  4FBD A; 
#chains in the Genus database with same CATH topology
 2OTR A;  4MMG A;  4MMJ A;  4NRN A;  4FXI A;  5IWH A;  2PD0 A;  1WMI A;  4Q2U B;  4ML2 A;  4LS4 A;  4FXH A;  2KC8 A;  3HI2 B;  1Z8M A;  2DJH A;  4FBD A;  2A6S A;  2A6Q E;  3G5O B;  2DFX E;  5CEG B;  4LTT A;  2FHZ B;  3AO9 A;  3BPQ B;  4PX8 A;  5CW7 B;  2KC9 A;  4FXE D;  3OEI C;  5CZE B;  2KHE A;  4ML0 B;  3VJ7 A;  4YY3 Y;  4MCX B;  1XQB A;  5IXL A;  3KXE A;  5CZF C;  2A6R A;  4LSY A;  2A8K A;  4MCT B; 
#chains in the Genus database with same CATH homology
 2DFX E;  3VJ7 A;  2FHZ B;  2PD0 A;  3AO9 A;  3HI2 B;  2A8K A;  2DJH A;  4FBD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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