4FLIA

Human metap1 with bengamide analog y16, in mn form
Total Genus 100
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
304
structure length
304
Chain Sequence
YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHFMS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Methionine aminopeptidase 1
publication title Structural analysis of bengamide derivatives as inhibitors of methionine aminopeptidases.
pubmed doi rcsb
source organism Homo sapiens
total genus 100
structure length 304
sequence length 304
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fliA00
2GTXA 5JHUA 4JUQA 4A6VA 2Q93A 1QXYA 5CLSA 5D6EA 2BWYA 2GU6A 4U73A 4FLLA 4A6WA 2BB7A 1C24A 2BWSA 4U71A 5D6FA 1WN1A 1YW7A 3IU7A 4EGEA 1XGSA 2OKNA 3IU8A 3PKDA 4S01A 4ZNGA 4RZZA 3IG4A 4S2TP 1CHMA 1N51A 3BITA 2BN7A 4B28A 2BHCA 1WKMA 2IW2A 4ZWOA 2Q95A 1YW9A 4FKCA 1XNZA 2EVCA 2B3KA 1C22A 1QXZA 4S00A 1XGOA 4U6ZA 2GGBA 4IF7A 2G6PA 3MX6A 4FLIA 3CB6A 4FO7A 2EA2A 2GU4A 3Q6DA 1Y1NA 4HXXA 1R5GA 2DFIA 2GG8A 4IKUA 2EVOA 1WLRA 5CDEA 2GU5A 2GGCA 4MATA 1KQ0A 4IPAA 3MR1A 5CIKA 4ZWUA 1XGNA 2BHDA 1R58A 2Q94A 3TAVA 3S6BA 1B59A 1C27A 4IKSA 4QR8A 3RORA 4IKRA 2EA4A 1QXWA 5JI6A 2BWTA 1C23A 3FM3A 4R60A 4U6EA 4KM3A 2BWXA 5FCHA 3BIQA 4FLKA 3PKEA 1BOAA 2GG9A 4RZYA 1A16A 4OOKA 1PV9A 4IU6A 2P98A 4IDYA 2Q96A 3D27A 2NQ7A 4ZWPA 2V3YA 1JAWA 4IKTA 3PKBA 1W7VA 5E5BA 3RVAA 1O0XA 2BWUA 2ADUA 4U6WA 2V3XA 2P99A 4Z7MA 1KP0A 4PV4A 5CNXA 4U75A 1KQ9A 4S2RP 2GG3A 2P9AA 2B3HA 1BN5A 3IU9A 3FMRA 1WBQA 1WL6A 1R5HA 4U69A 5FCFA 2GG5A 2BH3A 2GG7A 4U6JA 4FO8A 1YVMA 2GU7A 2BWVA 1C21A 1QZYA 2B3LA 2BHBA 3CTZA 1XGMA 2GG2A 2GZ5A 3L24A 4U70A 3L7GA 1MATA 3TB5A 4U6CA 2MATA 2Q92A 1YJ3A 4U1BA 3PKAA 3FMQA 5CDLA 2EVMA 2V6CA 3BIPA 4U76A 2Q8KA 3MATA 3PKCA 4PNCA 4FLJA 2OAZA 1M35A 4RGZ1 2ZSGA 5CE6A 5JFRA 2HOWA 1W2MA 1B6AA 1WL9A 2BHAA 4FUKA 1YW8A 2GG0A 5CDVA 2BWWA 4IECA 3CB5A 2GA2A 2V3ZA 1WY2A 2NQ6A
chains in the Genus database with same CATH superfamily
2GTXA 5JHUA 4JUQA 4A6VA 2Q93A 1QXYA 5CLSA 5D6EA 2BWYA 2GU6A 4U73A 4FLLA 4A6WA 2BB7A 1C24A 2BWSA 4U71A 5D6FA 1WN1A 1YW7A 3IU7A 4EGEA 1XGSA 2OKNA 3IU8A 3PKDA 4S01A 4ZNGA 4RZZA 3IG4A 4S2TP 1CHMA 1N51A 3BITA 2BN7A 4B28A 2BHCA 1WKMA 2IW2A 4ZWOA 2Q95A 1YW9A 4FKCA 1XNZA 2EVCA 2B3KA 1C22A 1QXZA 4S00A 1XGOA 4U6ZA 2GGBA 4IF7A 2G6PA 3MX6A 4FLIA 3CB6A 4FO7A 2EA2A 2GU4A 3Q6DA 1Y1NA 4HXXA 1R5GA 2DFIA 2GG8A 4IKUA 2EVOA 1WLRA 5CDEA 2GU5A 2GGCA 4MATA 1KQ0A 4IPAA 3MR1A 5CIKA 4ZWUA 1XGNA 2BHDA 1R58A 2Q94A 3TAVA 3S6BA 1B59A 1C27A 4IKSA 4QR8A 3RORA 4IKRA 2EA4A 1QXWA 5JI6A 2BWTA 1C23A 3FM3A 4R60A 4U6EA 4KM3A 2BWXA 5FCHA 3BIQA 4FLKA 3PKEA 1BOAA 2GG9A 4RZYA 1A16A 4OOKA 1PV9A 4IU6A 2P98A 4IDYA 2Q96A 3D27A 2NQ7A 4ZWPA 2V3YA 1JAWA 4IKTA 3PKBA 1W7VA 5E5BA 3RVAA 1O0XA 2BWUA 2ADUA 4U6WA 2V3XA 2P99A 4Z7MA 1KP0A 4PV4A 5CNXA 4U75A 1KQ9A 4S2RP 2GG3A 2P9AA 2B3HA 1BN5A 3IU9A 3FMRA 1WBQA 1WL6A 1R5HA 4U69A 5FCFA 2GG5A 2BH3A 2GG7A 4U6JA 4FO8A 1YVMA 2GU7A 2BWVA 1C21A 1QZYA 2B3LA 2BHBA 3CTZA 1XGMA 2GG2A 2GZ5A 3L24A 4U70A 3L7GA 1MATA 3TB5A 4U6CA 2MATA 2Q92A 1YJ3A 4U1BA 3PKAA 3FMQA 5CDLA 2EVMA 2V6CA 3BIPA 4U76A 2Q8KA 3MATA 3PKCA 4PNCA 4FLJA 2OAZA 1M35A 4RGZ1 2ZSGA 5CE6A 5JFRA 2HOWA 1W2MA 1B6AA 1WL9A 2BHAA 4FUKA 1YW8A 2GG0A 5CDVA 2BWWA 4IECA 3CB5A 2GA2A 2V3ZA 1WY2A 2NQ6A
chains in the Genus database with same CATH topology
2GTXA 5JHUA 4JUQA 4A6VA 2Q93A 1QXYA 5CLSA 5D6EA 2BWYA 2GU6A 4U73A 4FLLA 4A6WA 2BB7A 1C24A 2BWSA 4U71A 5D6FA 1WN1A 1YW7A 3IU7A 4EGEA 1XGSA 2OKNA 3IU8A 3PKDA 4S01A 4ZNGA 4RZZA 3IG4A 4S2TP 1CHMA 1N51A 3BITA 2BN7A 4B28A 2BHCA 1WKMA 2IW2A 4ZWOA 2Q95A 1YW9A 4FKCA 1XNZA 2EVCA 2B3KA 1C22A 1QXZA 4S00A 1XGOA 4U6ZA 2GGBA 4IF7A 2G6PA 3MX6A 4FLIA 3CB6A 4FO7A 2EA2A 2GU4A 3Q6DA 1Y1NA 4HXXA 1R5GA 2DFIA 2GG8A 4IKUA 2EVOA 1WLRA 5CDEA 2GU5A 2GGCA 4MATA 1KQ0A 4IPAA 3MR1A 5CIKA 4ZWUA 1XGNA 2BHDA 1R58A 2Q94A 3TAVA 3S6BA 1B59A 1C27A 4IKSA 4QR8A 3RORA 4IKRA 2EA4A 1QXWA 5JI6A 2BWTA 1C23A 3FM3A 4R60A 4U6EA 4KM3A 2BWXA 5FCHA 3BIQA 4FLKA 3PKEA 1BOAA 2GG9A 4RZYA 1A16A 4OOKA 1PV9A 4IU6A 2P98A 4IDYA 2Q96A 3D27A 2NQ7A 4ZWPA 2V3YA 1JAWA 4IKTA 3PKBA 1W7VA 5E5BA 3RVAA 1O0XA 2BWUA 2ADUA 4U6WA 2V3XA 2P99A 4Z7MA 1KP0A 4PV4A 5CNXA 4U75A 1KQ9A 4S2RP 2GG3A 2P9AA 2B3HA 1BN5A 3IU9A 3FMRA 1WBQA 1WL6A 1R5HA 4U69A 5FCFA 2GG5A 2BH3A 2GG7A 4U6JA 4FO8A 1YVMA 2GU7A 2BWVA 1C21A 1QZYA 2B3LA 2BHBA 3CTZA 1XGMA 2GG2A 2GZ5A 3L24A 4U70A 3L7GA 1MATA 3TB5A 4U6CA 2MATA 2Q92A 1YJ3A 4U1BA 3PKAA 3FMQA 5CDLA 2EVMA 2V6CA 3BIPA 4U76A 2Q8KA 3MATA 3PKCA 4PNCA 4FLJA 2OAZA 1M35A 4RGZ1 2ZSGA 5CE6A 5JFRA 2HOWA 1W2MA 1B6AA 1WL9A 2BHAA 4FUKA 1YW8A 2GG0A 5CDVA 2BWWA 4IECA 3CB5A 2GA2A 2V3ZA 1WY2A 2NQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GTX A;  5JHU A;  4JUQ A;  4A6V A;  2Q93 A;  1QXY A;  5CLS A;  5D6E A;  2BWY A;  2GU6 A;  4U73 A;  4FLL A;  4A6W A;  2BB7 A;  1C24 A;  2BWS A;  4U71 A;  5D6F A;  1WN1 A;  1YW7 A;  3IU7 A;  4EGE A;  1XGS A;  2OKN A;  3IU8 A;  3PKD A;  4S01 A;  4ZNG A;  4RZZ A;  3IG4 A;  4S2T P;  1CHM A;  1N51 A;  3BIT A;  2BN7 A;  4B28 A;  2BHC A;  1WKM A;  2IW2 A;  4ZWO A;  2Q95 A;  1YW9 A;  4FKC A;  1XNZ A;  2EVC A;  2B3K A;  1C22 A;  1QXZ A;  4S00 A;  1XGO A;  4U6Z A;  2GGB A;  4IF7 A;  2G6P A;  3MX6 A;  4FLI A;  3CB6 A;  4FO7 A;  2EA2 A;  2GU4 A;  3Q6D A;  1Y1N A;  4HXX A;  1R5G A;  2DFI A;  2GG8 A;  4IKU A;  2EVO A;  1WLR A;  5CDE A;  2GU5 A;  2GGC A;  4MAT A;  1KQ0 A;  4IPA A;  3MR1 A;  5CIK A;  4ZWU A;  1XGN A;  2BHD A;  1R58 A;  2Q94 A;  3TAV A;  3S6B A;  1B59 A;  1C27 A;  4IKS A;  4QR8 A;  3ROR A;  4IKR A;  2EA4 A;  1QXW A;  5JI6 A;  2BWT A;  1C23 A;  3FM3 A;  4R60 A;  4U6E A;  4KM3 A;  2BWX A;  5FCH A;  3BIQ A;  4FLK A;  3PKE A;  1BOA A;  2GG9 A;  4RZY A;  1A16 A;  4OOK A;  1PV9 A;  4IU6 A;  2P98 A;  4IDY A;  2Q96 A;  3D27 A;  2NQ7 A;  4ZWP A;  2V3Y A;  1JAW A;  4IKT A;  3PKB A;  1W7V A;  5E5B A;  3RVA A;  1O0X A;  2BWU A;  2ADU A;  4U6W A;  2V3X A;  2P99 A;  4Z7M A;  1KP0 A;  4PV4 A;  5CNX A;  4U75 A;  1KQ9 A;  4S2R P;  2GG3 A;  2P9A A;  2B3H A;  1BN5 A;  3IU9 A;  3FMR A;  1WBQ A;  1WL6 A;  1R5H A;  4U69 A;  5FCF A;  2GG5 A;  2BH3 A;  2GG7 A;  4U6J A;  4FO8 A;  1YVM A;  2GU7 A;  2BWV A;  1C21 A;  1QZY A;  2B3L A;  2BHB A;  3CTZ A;  1XGM A;  2GG2 A;  2GZ5 A;  3L24 A;  4U70 A;  3L7G A;  1MAT A;  3TB5 A;  4U6C A;  2MAT A;  2Q92 A;  1YJ3 A;  4U1B A;  3PKA A;  3FMQ A;  5CDL A;  2EVM A;  2V6C A;  3BIP A;  4U76 A;  2Q8K A;  3MAT A;  3PKC A;  4PNC A;  4FLJ A;  2OAZ A;  1M35 A;  4RGZ 1;  2ZSG A;  5CE6 A;  5JFR A;  2HOW A;  1W2M A;  1B6A A;  1WL9 A;  2BHA A;  4FUK A;  1YW8 A;  2GG0 A;  5CDV A;  2BWW A;  4IEC A;  3CB5 A;  2GA2 A;  2V3Z A;  1WY2 A;  2NQ6 A; 
#chains in the Genus database with same CATH topology
 2GTX A;  5JHU A;  4JUQ A;  4A6V A;  2Q93 A;  1QXY A;  5CLS A;  5D6E A;  2BWY A;  2GU6 A;  4U73 A;  4FLL A;  4A6W A;  2BB7 A;  1C24 A;  2BWS A;  4U71 A;  5D6F A;  1WN1 A;  1YW7 A;  3IU7 A;  4EGE A;  1XGS A;  2OKN A;  3IU8 A;  3PKD A;  4S01 A;  4ZNG A;  4RZZ A;  3IG4 A;  4S2T P;  1CHM A;  1N51 A;  3BIT A;  2BN7 A;  4B28 A;  2BHC A;  1WKM A;  2IW2 A;  4ZWO A;  2Q95 A;  1YW9 A;  4FKC A;  1XNZ A;  2EVC A;  2B3K A;  1C22 A;  1QXZ A;  4S00 A;  1XGO A;  4U6Z A;  2GGB A;  4IF7 A;  2G6P A;  3MX6 A;  4FLI A;  3CB6 A;  4FO7 A;  2EA2 A;  2GU4 A;  3Q6D A;  1Y1N A;  4HXX A;  1R5G A;  2DFI A;  2GG8 A;  4IKU A;  2EVO A;  1WLR A;  5CDE A;  2GU5 A;  2GGC A;  4MAT A;  1KQ0 A;  4IPA A;  3MR1 A;  5CIK A;  4ZWU A;  1XGN A;  2BHD A;  1R58 A;  2Q94 A;  3TAV A;  3S6B A;  1B59 A;  1C27 A;  4IKS A;  4QR8 A;  3ROR A;  4IKR A;  2EA4 A;  1QXW A;  5JI6 A;  2BWT A;  1C23 A;  3FM3 A;  4R60 A;  4U6E A;  4KM3 A;  2BWX A;  5FCH A;  3BIQ A;  4FLK A;  3PKE A;  1BOA A;  2GG9 A;  4RZY A;  1A16 A;  4OOK A;  1PV9 A;  4IU6 A;  2P98 A;  4IDY A;  2Q96 A;  3D27 A;  2NQ7 A;  4ZWP A;  2V3Y A;  1JAW A;  4IKT A;  3PKB A;  1W7V A;  5E5B A;  3RVA A;  1O0X A;  2BWU A;  2ADU A;  4U6W A;  2V3X A;  2P99 A;  4Z7M A;  1KP0 A;  4PV4 A;  5CNX A;  4U75 A;  1KQ9 A;  4S2R P;  2GG3 A;  2P9A A;  2B3H A;  1BN5 A;  3IU9 A;  3FMR A;  1WBQ A;  1WL6 A;  1R5H A;  4U69 A;  5FCF A;  2GG5 A;  2BH3 A;  2GG7 A;  4U6J A;  4FO8 A;  1YVM A;  2GU7 A;  2BWV A;  1C21 A;  1QZY A;  2B3L A;  2BHB A;  3CTZ A;  1XGM A;  2GG2 A;  2GZ5 A;  3L24 A;  4U70 A;  3L7G A;  1MAT A;  3TB5 A;  4U6C A;  2MAT A;  2Q92 A;  1YJ3 A;  4U1B A;  3PKA A;  3FMQ A;  5CDL A;  2EVM A;  2V6C A;  3BIP A;  4U76 A;  2Q8K A;  3MAT A;  3PKC A;  4PNC A;  4FLJ A;  2OAZ A;  1M35 A;  4RGZ 1;  2ZSG A;  5CE6 A;  5JFR A;  2HOW A;  1W2M A;  1B6A A;  1WL9 A;  2BHA A;  4FUK A;  1YW8 A;  2GG0 A;  5CDV A;  2BWW A;  4IEC A;  3CB5 A;  2GA2 A;  2V3Z A;  1WY2 A;  2NQ6 A; 
#chains in the Genus database with same CATH homology
 2GTX A;  5JHU A;  4JUQ A;  4A6V A;  2Q93 A;  1QXY A;  5CLS A;  5D6E A;  2BWY A;  2GU6 A;  4U73 A;  4FLL A;  4A6W A;  2BB7 A;  1C24 A;  2BWS A;  4U71 A;  5D6F A;  1WN1 A;  1YW7 A;  3IU7 A;  4EGE A;  1XGS A;  2OKN A;  3IU8 A;  3PKD A;  4S01 A;  4ZNG A;  4RZZ A;  3IG4 A;  4S2T P;  1CHM A;  1N51 A;  3BIT A;  2BN7 A;  4B28 A;  2BHC A;  1WKM A;  2IW2 A;  4ZWO A;  2Q95 A;  1YW9 A;  4FKC A;  1XNZ A;  2EVC A;  2B3K A;  1C22 A;  1QXZ A;  4S00 A;  1XGO A;  4U6Z A;  2GGB A;  4IF7 A;  2G6P A;  3MX6 A;  4FLI A;  3CB6 A;  4FO7 A;  2EA2 A;  2GU4 A;  3Q6D A;  1Y1N A;  4HXX A;  1R5G A;  2DFI A;  2GG8 A;  4IKU A;  2EVO A;  1WLR A;  5CDE A;  2GU5 A;  2GGC A;  4MAT A;  1KQ0 A;  4IPA A;  3MR1 A;  5CIK A;  4ZWU A;  1XGN A;  2BHD A;  1R58 A;  2Q94 A;  3TAV A;  3S6B A;  1B59 A;  1C27 A;  4IKS A;  4QR8 A;  3ROR A;  4IKR A;  2EA4 A;  1QXW A;  5JI6 A;  2BWT A;  1C23 A;  3FM3 A;  4R60 A;  4U6E A;  4KM3 A;  2BWX A;  5FCH A;  3BIQ A;  4FLK A;  3PKE A;  1BOA A;  2GG9 A;  4RZY A;  1A16 A;  4OOK A;  1PV9 A;  4IU6 A;  2P98 A;  4IDY A;  2Q96 A;  3D27 A;  2NQ7 A;  4ZWP A;  2V3Y A;  1JAW A;  4IKT A;  3PKB A;  1W7V A;  5E5B A;  3RVA A;  1O0X A;  2BWU A;  2ADU A;  4U6W A;  2V3X A;  2P99 A;  4Z7M A;  1KP0 A;  4PV4 A;  5CNX A;  4U75 A;  1KQ9 A;  4S2R P;  2GG3 A;  2P9A A;  2B3H A;  1BN5 A;  3IU9 A;  3FMR A;  1WBQ A;  1WL6 A;  1R5H A;  4U69 A;  5FCF A;  2GG5 A;  2BH3 A;  2GG7 A;  4U6J A;  4FO8 A;  1YVM A;  2GU7 A;  2BWV A;  1C21 A;  1QZY A;  2B3L A;  2BHB A;  3CTZ A;  1XGM A;  2GG2 A;  2GZ5 A;  3L24 A;  4U70 A;  3L7G A;  1MAT A;  3TB5 A;  4U6C A;  2MAT A;  2Q92 A;  1YJ3 A;  4U1B A;  3PKA A;  3FMQ A;  5CDL A;  2EVM A;  2V6C A;  3BIP A;  4U76 A;  2Q8K A;  3MAT A;  3PKC A;  4PNC A;  4FLJ A;  2OAZ A;  1M35 A;  4RGZ 1;  2ZSG A;  5CE6 A;  5JFR A;  2HOW A;  1W2M A;  1B6A A;  1WL9 A;  2BHA A;  4FUK A;  1YW8 A;  2GG0 A;  5CDV A;  2BWW A;  4IEC A;  3CB5 A;  2GA2 A;  2V3Z A;  1WY2 A;  2NQ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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