4FO7A

Pseudomonas aeruginosa metap, in mn form
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
258
structure length
258
Chain Sequence
TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Hydrolase
molecule keywords Methionine aminopeptidase
publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
source organism Pseudomonas aeruginosa
total genus 74
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2012-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fo7A00
5CDEA 4U69A 3FM3A 1XNZA 2NQ6A 1WY2A 2GTXA 3PKEA 2BWUA 2GGCA 1C21A 4FLJA 4FO7A 4EGEA 3PKBA 2GU7A 1N51A 1WBQA 2NQ7A 4R60A 4ZWOA 2Q94A 5CDVA 3L7GA 4FO8A 1BOAA 2ZSGA 4MATA 1WL6A 2BHBA 2BWWA 3RVAA 1M35A 4S01A 4RGZ1 2GG8A 2EVOA 4PNCA 1QZYA 4IECA 2V3XA 2BHCA 4JUQA 4FLLA 4FUKA 2GG2A 3IG4A 1JAWA 1C22A 3IU7A 4U6CA 1XGMA 4IKTA 4PV4A 1YVMA 1YW7A 4S00A 2GA2A 4HXXA 3BITA 3MX6A 4S2TP 1W7VA 3BIPA 4U76A 1WL9A 2GG0A 1YW9A 2Q8KA 2GG5A 1KQ9A 1W2MA 1WLRA 3D27A 4IKUA 4FLIA 4A6VA 2BWXA 3PKAA 2EA4A 5E5BA 2BWSA 3PKCA 3CB5A 2V3ZA 2GG9A 2P9AA 4U6WA 4S2RP 5CDLA 2HOWA 2BB7A 4U71A 4U6JA 5JFRA 1YW8A 1YJ3A 2OAZA 1KQ0A 2P99A 3RORA 1QXZA 2ADUA 4ZWPA 2G6PA 4U70A 1O0XA 2EVCA 2GG3A 4IDYA 4RZZA 4U1BA 2BN7A 1B59A 1XGOA 3Q6DA 3IU9A 5JHUA 2GZ5A 3CB6A 1R5HA 4U73A 1C23A 1KP0A 2GGBA 1R58A 4Z7MA 1R5GA 2DFIA 1Y1NA 2GU4A 4KM3A 1QXWA 4U75A 2Q92A 1CHMA 3FMQA 2B3LA 3FMRA 1WKMA 4RZYA 2BWTA 4QR8A 1XGNA 1C27A 3CTZA 2BHDA 2V3YA 5CIKA 2IW2A 2Q96A 2B3HA 4A6WA 2B3KA 5FCFA 1XGSA 2BWYA 2MATA 5CLSA 1BN5A 2V6CA 4IPAA 3PKDA 2GU5A 1A16A 1QXYA 2BHAA 2Q93A 3L24A 2EA2A 4IF7A 2GG7A 1PV9A 5D6EA 4ZWUA 3MATA 3BIQA 3MR1A 4FLKA 5JI6A 3IU8A 5CE6A 2BWVA 2OKNA 1WN1A 1B6AA 4FKCA 5D6FA 3TAVA 2P98A 5CNXA 3TB5A 3S6BA 2EVMA 4U6EA 1MATA 4IU6A 5FCHA 4ZNGA 1C24A 2Q95A 4IKSA 2GU6A 4OOKA 2BH3A 4B28A 4U6ZA 4IKRA
chains in the Genus database with same CATH superfamily
5CDEA 4U69A 3FM3A 1XNZA 2NQ6A 1WY2A 2GTXA 3PKEA 2BWUA 2GGCA 1C21A 4FLJA 4FO7A 4EGEA 3PKBA 2GU7A 1N51A 1WBQA 2NQ7A 4R60A 4ZWOA 2Q94A 5CDVA 3L7GA 4FO8A 1BOAA 2ZSGA 4MATA 1WL6A 2BHBA 2BWWA 3RVAA 1M35A 4S01A 4RGZ1 2GG8A 2EVOA 4PNCA 1QZYA 4IECA 2V3XA 2BHCA 4JUQA 4FLLA 4FUKA 2GG2A 3IG4A 1JAWA 1C22A 3IU7A 4U6CA 1XGMA 4IKTA 4PV4A 1YVMA 1YW7A 4S00A 2GA2A 4HXXA 3BITA 3MX6A 4S2TP 1W7VA 3BIPA 4U76A 1WL9A 2GG0A 1YW9A 2Q8KA 2GG5A 1KQ9A 1W2MA 1WLRA 3D27A 4IKUA 4FLIA 4A6VA 2BWXA 3PKAA 2EA4A 5E5BA 2BWSA 3PKCA 3CB5A 2V3ZA 2GG9A 2P9AA 4U6WA 4S2RP 5CDLA 2HOWA 2BB7A 4U71A 4U6JA 5JFRA 1YW8A 1YJ3A 2OAZA 1KQ0A 2P99A 3RORA 1QXZA 2ADUA 4ZWPA 2G6PA 4U70A 1O0XA 2EVCA 2GG3A 4IDYA 4RZZA 4U1BA 2BN7A 1B59A 1XGOA 3Q6DA 3IU9A 5JHUA 2GZ5A 3CB6A 1R5HA 4U73A 1C23A 1KP0A 2GGBA 1R58A 4Z7MA 1R5GA 2DFIA 1Y1NA 2GU4A 4KM3A 1QXWA 4U75A 2Q92A 1CHMA 3FMQA 2B3LA 3FMRA 1WKMA 4RZYA 2BWTA 4QR8A 1XGNA 1C27A 3CTZA 2BHDA 2V3YA 5CIKA 2IW2A 2Q96A 2B3HA 4A6WA 2B3KA 5FCFA 1XGSA 2BWYA 2MATA 5CLSA 1BN5A 2V6CA 4IPAA 3PKDA 2GU5A 1A16A 1QXYA 2BHAA 2Q93A 3L24A 2EA2A 4IF7A 2GG7A 1PV9A 5D6EA 4ZWUA 3MATA 3BIQA 3MR1A 4FLKA 5JI6A 3IU8A 5CE6A 2BWVA 2OKNA 1WN1A 1B6AA 4FKCA 5D6FA 3TAVA 2P98A 5CNXA 3TB5A 3S6BA 2EVMA 4U6EA 1MATA 4IU6A 5FCHA 4ZNGA 1C24A 2Q95A 4IKSA 2GU6A 4OOKA 2BH3A 4B28A 4U6ZA 4IKRA
chains in the Genus database with same CATH topology
5CDEA 4U69A 3FM3A 1XNZA 2NQ6A 1WY2A 2GTXA 3PKEA 2BWUA 2GGCA 1C21A 4FLJA 4FO7A 4EGEA 3PKBA 2GU7A 1N51A 1WBQA 2NQ7A 4R60A 4ZWOA 2Q94A 5CDVA 3L7GA 4FO8A 1BOAA 2ZSGA 4MATA 1WL6A 2BHBA 2BWWA 3RVAA 1M35A 4S01A 4RGZ1 2GG8A 2EVOA 4PNCA 1QZYA 4IECA 2V3XA 2BHCA 4JUQA 4FLLA 4FUKA 2GG2A 3IG4A 1JAWA 1C22A 3IU7A 4U6CA 1XGMA 4IKTA 4PV4A 1YVMA 1YW7A 4S00A 2GA2A 4HXXA 3BITA 3MX6A 4S2TP 1W7VA 3BIPA 4U76A 1WL9A 2GG0A 1YW9A 2Q8KA 2GG5A 1KQ9A 1W2MA 1WLRA 3D27A 4IKUA 4FLIA 4A6VA 2BWXA 3PKAA 2EA4A 5E5BA 2BWSA 3PKCA 3CB5A 2V3ZA 2GG9A 2P9AA 4U6WA 4S2RP 5CDLA 2HOWA 2BB7A 4U71A 4U6JA 5JFRA 1YW8A 1YJ3A 2OAZA 1KQ0A 2P99A 3RORA 1QXZA 2ADUA 4ZWPA 2G6PA 4U70A 1O0XA 2EVCA 2GG3A 4IDYA 4RZZA 4U1BA 2BN7A 1B59A 1XGOA 3Q6DA 3IU9A 5JHUA 2GZ5A 3CB6A 1R5HA 4U73A 1C23A 1KP0A 2GGBA 1R58A 4Z7MA 1R5GA 2DFIA 1Y1NA 2GU4A 4KM3A 1QXWA 4U75A 2Q92A 1CHMA 3FMQA 2B3LA 3FMRA 1WKMA 4RZYA 2BWTA 4QR8A 1XGNA 1C27A 3CTZA 2BHDA 2V3YA 5CIKA 2IW2A 2Q96A 2B3HA 4A6WA 2B3KA 5FCFA 1XGSA 2BWYA 2MATA 5CLSA 1BN5A 2V6CA 4IPAA 3PKDA 2GU5A 1A16A 1QXYA 2BHAA 2Q93A 3L24A 2EA2A 4IF7A 2GG7A 1PV9A 5D6EA 4ZWUA 3MATA 3BIQA 3MR1A 4FLKA 5JI6A 3IU8A 5CE6A 2BWVA 2OKNA 1WN1A 1B6AA 4FKCA 5D6FA 3TAVA 2P98A 5CNXA 3TB5A 3S6BA 2EVMA 4U6EA 1MATA 4IU6A 5FCHA 4ZNGA 1C24A 2Q95A 4IKSA 2GU6A 4OOKA 2BH3A 4B28A 4U6ZA 4IKRA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5CDE A;  4U69 A;  3FM3 A;  1XNZ A;  2NQ6 A;  1WY2 A;  2GTX A;  3PKE A;  2BWU A;  2GGC A;  1C21 A;  4FLJ A;  4FO7 A;  4EGE A;  3PKB A;  2GU7 A;  1N51 A;  1WBQ A;  2NQ7 A;  4R60 A;  4ZWO A;  2Q94 A;  5CDV A;  3L7G A;  4FO8 A;  1BOA A;  2ZSG A;  4MAT A;  1WL6 A;  2BHB A;  2BWW A;  3RVA A;  1M35 A;  4S01 A;  4RGZ 1;  2GG8 A;  2EVO A;  4PNC A;  1QZY A;  4IEC A;  2V3X A;  2BHC A;  4JUQ A;  4FLL A;  4FUK A;  2GG2 A;  3IG4 A;  1JAW A;  1C22 A;  3IU7 A;  4U6C A;  1XGM A;  4IKT A;  4PV4 A;  1YVM A;  1YW7 A;  4S00 A;  2GA2 A;  4HXX A;  3BIT A;  3MX6 A;  4S2T P;  1W7V A;  3BIP A;  4U76 A;  1WL9 A;  2GG0 A;  1YW9 A;  2Q8K A;  2GG5 A;  1KQ9 A;  1W2M A;  1WLR A;  3D27 A;  4IKU A;  4FLI A;  4A6V A;  2BWX A;  3PKA A;  2EA4 A;  5E5B A;  2BWS A;  3PKC A;  3CB5 A;  2V3Z A;  2GG9 A;  2P9A A;  4U6W A;  4S2R P;  5CDL A;  2HOW A;  2BB7 A;  4U71 A;  4U6J A;  5JFR A;  1YW8 A;  1YJ3 A;  2OAZ A;  1KQ0 A;  2P99 A;  3ROR A;  1QXZ A;  2ADU A;  4ZWP A;  2G6P A;  4U70 A;  1O0X A;  2EVC A;  2GG3 A;  4IDY A;  4RZZ A;  4U1B A;  2BN7 A;  1B59 A;  1XGO A;  3Q6D A;  3IU9 A;  5JHU A;  2GZ5 A;  3CB6 A;  1R5H A;  4U73 A;  1C23 A;  1KP0 A;  2GGB A;  1R58 A;  4Z7M A;  1R5G A;  2DFI A;  1Y1N A;  2GU4 A;  4KM3 A;  1QXW A;  4U75 A;  2Q92 A;  1CHM A;  3FMQ A;  2B3L A;  3FMR A;  1WKM A;  4RZY A;  2BWT A;  4QR8 A;  1XGN A;  1C27 A;  3CTZ A;  2BHD A;  2V3Y A;  5CIK A;  2IW2 A;  2Q96 A;  2B3H A;  4A6W A;  2B3K A;  5FCF A;  1XGS A;  2BWY A;  2MAT A;  5CLS A;  1BN5 A;  2V6C A;  4IPA A;  3PKD A;  2GU5 A;  1A16 A;  1QXY A;  2BHA A;  2Q93 A;  3L24 A;  2EA2 A;  4IF7 A;  2GG7 A;  1PV9 A;  5D6E A;  4ZWU A;  3MAT A;  3BIQ A;  3MR1 A;  4FLK A;  5JI6 A;  3IU8 A;  5CE6 A;  2BWV A;  2OKN A;  1WN1 A;  1B6A A;  4FKC A;  5D6F A;  3TAV A;  2P98 A;  5CNX A;  3TB5 A;  3S6B A;  2EVM A;  4U6E A;  1MAT A;  4IU6 A;  5FCH A;  4ZNG A;  1C24 A;  2Q95 A;  4IKS A;  2GU6 A;  4OOK A;  2BH3 A;  4B28 A;  4U6Z A;  4IKR A; 
#chains in the Genus database with same CATH topology
 5CDE A;  4U69 A;  3FM3 A;  1XNZ A;  2NQ6 A;  1WY2 A;  2GTX A;  3PKE A;  2BWU A;  2GGC A;  1C21 A;  4FLJ A;  4FO7 A;  4EGE A;  3PKB A;  2GU7 A;  1N51 A;  1WBQ A;  2NQ7 A;  4R60 A;  4ZWO A;  2Q94 A;  5CDV A;  3L7G A;  4FO8 A;  1BOA A;  2ZSG A;  4MAT A;  1WL6 A;  2BHB A;  2BWW A;  3RVA A;  1M35 A;  4S01 A;  4RGZ 1;  2GG8 A;  2EVO A;  4PNC A;  1QZY A;  4IEC A;  2V3X A;  2BHC A;  4JUQ A;  4FLL A;  4FUK A;  2GG2 A;  3IG4 A;  1JAW A;  1C22 A;  3IU7 A;  4U6C A;  1XGM A;  4IKT A;  4PV4 A;  1YVM A;  1YW7 A;  4S00 A;  2GA2 A;  4HXX A;  3BIT A;  3MX6 A;  4S2T P;  1W7V A;  3BIP A;  4U76 A;  1WL9 A;  2GG0 A;  1YW9 A;  2Q8K A;  2GG5 A;  1KQ9 A;  1W2M A;  1WLR A;  3D27 A;  4IKU A;  4FLI A;  4A6V A;  2BWX A;  3PKA A;  2EA4 A;  5E5B A;  2BWS A;  3PKC A;  3CB5 A;  2V3Z A;  2GG9 A;  2P9A A;  4U6W A;  4S2R P;  5CDL A;  2HOW A;  2BB7 A;  4U71 A;  4U6J A;  5JFR A;  1YW8 A;  1YJ3 A;  2OAZ A;  1KQ0 A;  2P99 A;  3ROR A;  1QXZ A;  2ADU A;  4ZWP A;  2G6P A;  4U70 A;  1O0X A;  2EVC A;  2GG3 A;  4IDY A;  4RZZ A;  4U1B A;  2BN7 A;  1B59 A;  1XGO A;  3Q6D A;  3IU9 A;  5JHU A;  2GZ5 A;  3CB6 A;  1R5H A;  4U73 A;  1C23 A;  1KP0 A;  2GGB A;  1R58 A;  4Z7M A;  1R5G A;  2DFI A;  1Y1N A;  2GU4 A;  4KM3 A;  1QXW A;  4U75 A;  2Q92 A;  1CHM A;  3FMQ A;  2B3L A;  3FMR A;  1WKM A;  4RZY A;  2BWT A;  4QR8 A;  1XGN A;  1C27 A;  3CTZ A;  2BHD A;  2V3Y A;  5CIK A;  2IW2 A;  2Q96 A;  2B3H A;  4A6W A;  2B3K A;  5FCF A;  1XGS A;  2BWY A;  2MAT A;  5CLS A;  1BN5 A;  2V6C A;  4IPA A;  3PKD A;  2GU5 A;  1A16 A;  1QXY A;  2BHA A;  2Q93 A;  3L24 A;  2EA2 A;  4IF7 A;  2GG7 A;  1PV9 A;  5D6E A;  4ZWU A;  3MAT A;  3BIQ A;  3MR1 A;  4FLK A;  5JI6 A;  3IU8 A;  5CE6 A;  2BWV A;  2OKN A;  1WN1 A;  1B6A A;  4FKC A;  5D6F A;  3TAV A;  2P98 A;  5CNX A;  3TB5 A;  3S6B A;  2EVM A;  4U6E A;  1MAT A;  4IU6 A;  5FCH A;  4ZNG A;  1C24 A;  2Q95 A;  4IKS A;  2GU6 A;  4OOK A;  2BH3 A;  4B28 A;  4U6Z A;  4IKR A; 
#chains in the Genus database with same CATH homology
 5CDE A;  4U69 A;  3FM3 A;  1XNZ A;  2NQ6 A;  1WY2 A;  2GTX A;  3PKE A;  2BWU A;  2GGC A;  1C21 A;  4FLJ A;  4FO7 A;  4EGE A;  3PKB A;  2GU7 A;  1N51 A;  1WBQ A;  2NQ7 A;  4R60 A;  4ZWO A;  2Q94 A;  5CDV A;  3L7G A;  4FO8 A;  1BOA A;  2ZSG A;  4MAT A;  1WL6 A;  2BHB A;  2BWW A;  3RVA A;  1M35 A;  4S01 A;  4RGZ 1;  2GG8 A;  2EVO A;  4PNC A;  1QZY A;  4IEC A;  2V3X A;  2BHC A;  4JUQ A;  4FLL A;  4FUK A;  2GG2 A;  3IG4 A;  1JAW A;  1C22 A;  3IU7 A;  4U6C A;  1XGM A;  4IKT A;  4PV4 A;  1YVM A;  1YW7 A;  4S00 A;  2GA2 A;  4HXX A;  3BIT A;  3MX6 A;  4S2T P;  1W7V A;  3BIP A;  4U76 A;  1WL9 A;  2GG0 A;  1YW9 A;  2Q8K A;  2GG5 A;  1KQ9 A;  1W2M A;  1WLR A;  3D27 A;  4IKU A;  4FLI A;  4A6V A;  2BWX A;  3PKA A;  2EA4 A;  5E5B A;  2BWS A;  3PKC A;  3CB5 A;  2V3Z A;  2GG9 A;  2P9A A;  4U6W A;  4S2R P;  5CDL A;  2HOW A;  2BB7 A;  4U71 A;  4U6J A;  5JFR A;  1YW8 A;  1YJ3 A;  2OAZ A;  1KQ0 A;  2P99 A;  3ROR A;  1QXZ A;  2ADU A;  4ZWP A;  2G6P A;  4U70 A;  1O0X A;  2EVC A;  2GG3 A;  4IDY A;  4RZZ A;  4U1B A;  2BN7 A;  1B59 A;  1XGO A;  3Q6D A;  3IU9 A;  5JHU A;  2GZ5 A;  3CB6 A;  1R5H A;  4U73 A;  1C23 A;  1KP0 A;  2GGB A;  1R58 A;  4Z7M A;  1R5G A;  2DFI A;  1Y1N A;  2GU4 A;  4KM3 A;  1QXW A;  4U75 A;  2Q92 A;  1CHM A;  3FMQ A;  2B3L A;  3FMR A;  1WKM A;  4RZY A;  2BWT A;  4QR8 A;  1XGN A;  1C27 A;  3CTZ A;  2BHD A;  2V3Y A;  5CIK A;  2IW2 A;  2Q96 A;  2B3H A;  4A6W A;  2B3K A;  5FCF A;  1XGS A;  2BWY A;  2MAT A;  5CLS A;  1BN5 A;  2V6C A;  4IPA A;  3PKD A;  2GU5 A;  1A16 A;  1QXY A;  2BHA A;  2Q93 A;  3L24 A;  2EA2 A;  4IF7 A;  2GG7 A;  1PV9 A;  5D6E A;  4ZWU A;  3MAT A;  3BIQ A;  3MR1 A;  4FLK A;  5JI6 A;  3IU8 A;  5CE6 A;  2BWV A;  2OKN A;  1WN1 A;  1B6A A;  4FKC A;  5D6F A;  3TAV A;  2P98 A;  5CNX A;  3TB5 A;  3S6B A;  2EVM A;  4U6E A;  1MAT A;  4IU6 A;  5FCH A;  4ZNG A;  1C24 A;  2Q95 A;  4IKS A;  2GU6 A;  4OOK A;  2BH3 A;  4B28 A;  4U6Z A;  4IKR A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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