4FO8A

Pseudomonas aeruginosa metap with met, in mn form
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
259
structure length
259
Chain Sequence
TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTSA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Hydrolase
molecule keywords Methionine aminopeptidase
publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
source organism Pseudomonas aeruginosa
total genus 83
structure length 259
sequence length 259
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2012-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fo8A00
4MATA 3CTZA 1QXYA 3IU7A 1WN1A 4IKUA 3MX6A 4EGEA 5E5BA 1B59A 3PKCA 4FLIA 3RORA 5FCHA 5CE6A 4Z7MA 4S01A 1BN5A 4U6ZA 1O0XA 3IG4A 3CB6A 5CDEA 4U6EA 4U71A 1B6AA 2GGCA 1XGOA 2GG0A 4FLJA 5CDLA 4IDYA 2GZ5A 4U1BA 2BWVA 1C22A 1C23A 4PV4A 4B28A 3IU8A 3PKEA 4S2TP 5D6EA 4U6WA 1YW9A 4IPAA 2GG9A 1R5GA 2V3YA 4ZNGA 4ZWUA 4FO8A 1M35A 4IECA 3TB5A 2Q92A 3FM3A 2EA4A 5CNXA 3PKBA 3BITA 1R5HA 2NQ6A 2OAZA 2GTXA 3PKAA 2BB7A 2BWWA 2BH3A 3Q6DA 1YW7A 2BHDA 1PV9A 4ZWOA 2GA2A 2GG3A 1R58A 2B3HA 2DFIA 5CDVA 5JI6A 3FMRA 5D6FA 1CHMA 2V3XA 4U69A 3MATA 2NQ7A 5JHUA 4R60A 1XNZA 4RGZ1 4U6JA 5JFRA 2Q94A 2BWYA 3FMQA 1KQ9A 4FO7A 4IF7A 3S6BA 4U73A 1WL9A 2Q8KA 2BHAA 2GU7A 4S2RP 1KP0A 1WBQA 4JUQA 2GU6A 1QXZA 1W2MA 2BHCA 2HOWA 3CB5A 1KQ0A 1YJ3A 4A6WA 2B3LA 5FCFA 4FLLA 2EVOA 1MATA 2V6CA 4FKCA 4QR8A 2BN7A 2GG8A 2GGBA 1C21A 3BIQA 2BHBA 1WL6A 2IW2A 2Q95A 4FUKA 4KM3A 4ZWPA 3L24A 2V3ZA 4PNCA 3RVAA 3D27A 2BWXA 4HXXA 1WKMA 3PKDA 4IKTA 4RZZA 2EA2A 2BWUA 4OOKA 2GU4A 4U76A 1YVMA 2GG2A 1BOAA 2G6PA 1XGSA 3MR1A 2BWTA 1QXWA 2GU5A 4A6VA 4U6CA 1WLRA 2EVMA 3BIPA 1A16A 2OKNA 4U75A 3TAVA 2Q93A 4FLKA 1JAWA 5CIKA 1Y1NA 4S00A 2BWSA 2P99A 4IU6A 2ZSGA 5CLSA 1XGMA 4U70A 4IKSA 2ADUA 2P9AA 2P98A 1C27A 2GG7A 1QZYA 4RZYA 3L7GA 2GG5A 1YW8A 1C24A 3IU9A 2Q96A 4IKRA 1W7VA 2EVCA 2MATA 1N51A 2B3KA 1WY2A 1XGNA
chains in the Genus database with same CATH superfamily
4MATA 3CTZA 1QXYA 3IU7A 1WN1A 4IKUA 3MX6A 4EGEA 5E5BA 1B59A 3PKCA 4FLIA 3RORA 5FCHA 5CE6A 4Z7MA 4S01A 1BN5A 4U6ZA 1O0XA 3IG4A 3CB6A 5CDEA 4U6EA 4U71A 1B6AA 2GGCA 1XGOA 2GG0A 4FLJA 5CDLA 4IDYA 2GZ5A 4U1BA 2BWVA 1C22A 1C23A 4PV4A 4B28A 3IU8A 3PKEA 4S2TP 5D6EA 4U6WA 1YW9A 4IPAA 2GG9A 1R5GA 2V3YA 4ZNGA 4ZWUA 4FO8A 1M35A 4IECA 3TB5A 2Q92A 3FM3A 2EA4A 5CNXA 3PKBA 3BITA 1R5HA 2NQ6A 2OAZA 2GTXA 3PKAA 2BB7A 2BWWA 2BH3A 3Q6DA 1YW7A 2BHDA 1PV9A 4ZWOA 2GA2A 2GG3A 1R58A 2B3HA 2DFIA 5CDVA 5JI6A 3FMRA 5D6FA 1CHMA 2V3XA 4U69A 3MATA 2NQ7A 5JHUA 4R60A 1XNZA 4RGZ1 4U6JA 5JFRA 2Q94A 2BWYA 3FMQA 1KQ9A 4FO7A 4IF7A 3S6BA 4U73A 1WL9A 2Q8KA 2BHAA 2GU7A 4S2RP 1KP0A 1WBQA 4JUQA 2GU6A 1QXZA 1W2MA 2BHCA 2HOWA 3CB5A 1KQ0A 1YJ3A 4A6WA 2B3LA 5FCFA 4FLLA 2EVOA 1MATA 2V6CA 4FKCA 4QR8A 2BN7A 2GG8A 2GGBA 1C21A 3BIQA 2BHBA 1WL6A 2IW2A 2Q95A 4FUKA 4KM3A 4ZWPA 3L24A 2V3ZA 4PNCA 3RVAA 3D27A 2BWXA 4HXXA 1WKMA 3PKDA 4IKTA 4RZZA 2EA2A 2BWUA 4OOKA 2GU4A 4U76A 1YVMA 2GG2A 1BOAA 2G6PA 1XGSA 3MR1A 2BWTA 1QXWA 2GU5A 4A6VA 4U6CA 1WLRA 2EVMA 3BIPA 1A16A 2OKNA 4U75A 3TAVA 2Q93A 4FLKA 1JAWA 5CIKA 1Y1NA 4S00A 2BWSA 2P99A 4IU6A 2ZSGA 5CLSA 1XGMA 4U70A 4IKSA 2ADUA 2P9AA 2P98A 1C27A 2GG7A 1QZYA 4RZYA 3L7GA 2GG5A 1YW8A 1C24A 3IU9A 2Q96A 4IKRA 1W7VA 2EVCA 2MATA 1N51A 2B3KA 1WY2A 1XGNA
chains in the Genus database with same CATH topology
4MATA 3CTZA 1QXYA 3IU7A 1WN1A 4IKUA 3MX6A 4EGEA 5E5BA 1B59A 3PKCA 4FLIA 3RORA 5FCHA 5CE6A 4Z7MA 4S01A 1BN5A 4U6ZA 1O0XA 3IG4A 3CB6A 5CDEA 4U6EA 4U71A 1B6AA 2GGCA 1XGOA 2GG0A 4FLJA 5CDLA 4IDYA 2GZ5A 4U1BA 2BWVA 1C22A 1C23A 4PV4A 4B28A 3IU8A 3PKEA 4S2TP 5D6EA 4U6WA 1YW9A 4IPAA 2GG9A 1R5GA 2V3YA 4ZNGA 4ZWUA 4FO8A 1M35A 4IECA 3TB5A 2Q92A 3FM3A 2EA4A 5CNXA 3PKBA 3BITA 1R5HA 2NQ6A 2OAZA 2GTXA 3PKAA 2BB7A 2BWWA 2BH3A 3Q6DA 1YW7A 2BHDA 1PV9A 4ZWOA 2GA2A 2GG3A 1R58A 2B3HA 2DFIA 5CDVA 5JI6A 3FMRA 5D6FA 1CHMA 2V3XA 4U69A 3MATA 2NQ7A 5JHUA 4R60A 1XNZA 4RGZ1 4U6JA 5JFRA 2Q94A 2BWYA 3FMQA 1KQ9A 4FO7A 4IF7A 3S6BA 4U73A 1WL9A 2Q8KA 2BHAA 2GU7A 4S2RP 1KP0A 1WBQA 4JUQA 2GU6A 1QXZA 1W2MA 2BHCA 2HOWA 3CB5A 1KQ0A 1YJ3A 4A6WA 2B3LA 5FCFA 4FLLA 2EVOA 1MATA 2V6CA 4FKCA 4QR8A 2BN7A 2GG8A 2GGBA 1C21A 3BIQA 2BHBA 1WL6A 2IW2A 2Q95A 4FUKA 4KM3A 4ZWPA 3L24A 2V3ZA 4PNCA 3RVAA 3D27A 2BWXA 4HXXA 1WKMA 3PKDA 4IKTA 4RZZA 2EA2A 2BWUA 4OOKA 2GU4A 4U76A 1YVMA 2GG2A 1BOAA 2G6PA 1XGSA 3MR1A 2BWTA 1QXWA 2GU5A 4A6VA 4U6CA 1WLRA 2EVMA 3BIPA 1A16A 2OKNA 4U75A 3TAVA 2Q93A 4FLKA 1JAWA 5CIKA 1Y1NA 4S00A 2BWSA 2P99A 4IU6A 2ZSGA 5CLSA 1XGMA 4U70A 4IKSA 2ADUA 2P9AA 2P98A 1C27A 2GG7A 1QZYA 4RZYA 3L7GA 2GG5A 1YW8A 1C24A 3IU9A 2Q96A 4IKRA 1W7VA 2EVCA 2MATA 1N51A 2B3KA 1WY2A 1XGNA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4MAT A;  3CTZ A;  1QXY A;  3IU7 A;  1WN1 A;  4IKU A;  3MX6 A;  4EGE A;  5E5B A;  1B59 A;  3PKC A;  4FLI A;  3ROR A;  5FCH A;  5CE6 A;  4Z7M A;  4S01 A;  1BN5 A;  4U6Z A;  1O0X A;  3IG4 A;  3CB6 A;  5CDE A;  4U6E A;  4U71 A;  1B6A A;  2GGC A;  1XGO A;  2GG0 A;  4FLJ A;  5CDL A;  4IDY A;  2GZ5 A;  4U1B A;  2BWV A;  1C22 A;  1C23 A;  4PV4 A;  4B28 A;  3IU8 A;  3PKE A;  4S2T P;  5D6E A;  4U6W A;  1YW9 A;  4IPA A;  2GG9 A;  1R5G A;  2V3Y A;  4ZNG A;  4ZWU A;  4FO8 A;  1M35 A;  4IEC A;  3TB5 A;  2Q92 A;  3FM3 A;  2EA4 A;  5CNX A;  3PKB A;  3BIT A;  1R5H A;  2NQ6 A;  2OAZ A;  2GTX A;  3PKA A;  2BB7 A;  2BWW A;  2BH3 A;  3Q6D A;  1YW7 A;  2BHD A;  1PV9 A;  4ZWO A;  2GA2 A;  2GG3 A;  1R58 A;  2B3H A;  2DFI A;  5CDV A;  5JI6 A;  3FMR A;  5D6F A;  1CHM A;  2V3X A;  4U69 A;  3MAT A;  2NQ7 A;  5JHU A;  4R60 A;  1XNZ A;  4RGZ 1;  4U6J A;  5JFR A;  2Q94 A;  2BWY A;  3FMQ A;  1KQ9 A;  4FO7 A;  4IF7 A;  3S6B A;  4U73 A;  1WL9 A;  2Q8K A;  2BHA A;  2GU7 A;  4S2R P;  1KP0 A;  1WBQ A;  4JUQ A;  2GU6 A;  1QXZ A;  1W2M A;  2BHC A;  2HOW A;  3CB5 A;  1KQ0 A;  1YJ3 A;  4A6W A;  2B3L A;  5FCF A;  4FLL A;  2EVO A;  1MAT A;  2V6C A;  4FKC A;  4QR8 A;  2BN7 A;  2GG8 A;  2GGB A;  1C21 A;  3BIQ A;  2BHB A;  1WL6 A;  2IW2 A;  2Q95 A;  4FUK A;  4KM3 A;  4ZWP A;  3L24 A;  2V3Z A;  4PNC A;  3RVA A;  3D27 A;  2BWX A;  4HXX A;  1WKM A;  3PKD A;  4IKT A;  4RZZ A;  2EA2 A;  2BWU A;  4OOK A;  2GU4 A;  4U76 A;  1YVM A;  2GG2 A;  1BOA A;  2G6P A;  1XGS A;  3MR1 A;  2BWT A;  1QXW A;  2GU5 A;  4A6V A;  4U6C A;  1WLR A;  2EVM A;  3BIP A;  1A16 A;  2OKN A;  4U75 A;  3TAV A;  2Q93 A;  4FLK A;  1JAW A;  5CIK A;  1Y1N A;  4S00 A;  2BWS A;  2P99 A;  4IU6 A;  2ZSG A;  5CLS A;  1XGM A;  4U70 A;  4IKS A;  2ADU A;  2P9A A;  2P98 A;  1C27 A;  2GG7 A;  1QZY A;  4RZY A;  3L7G A;  2GG5 A;  1YW8 A;  1C24 A;  3IU9 A;  2Q96 A;  4IKR A;  1W7V A;  2EVC A;  2MAT A;  1N51 A;  2B3K A;  1WY2 A;  1XGN A; 
#chains in the Genus database with same CATH topology
 4MAT A;  3CTZ A;  1QXY A;  3IU7 A;  1WN1 A;  4IKU A;  3MX6 A;  4EGE A;  5E5B A;  1B59 A;  3PKC A;  4FLI A;  3ROR A;  5FCH A;  5CE6 A;  4Z7M A;  4S01 A;  1BN5 A;  4U6Z A;  1O0X A;  3IG4 A;  3CB6 A;  5CDE A;  4U6E A;  4U71 A;  1B6A A;  2GGC A;  1XGO A;  2GG0 A;  4FLJ A;  5CDL A;  4IDY A;  2GZ5 A;  4U1B A;  2BWV A;  1C22 A;  1C23 A;  4PV4 A;  4B28 A;  3IU8 A;  3PKE A;  4S2T P;  5D6E A;  4U6W A;  1YW9 A;  4IPA A;  2GG9 A;  1R5G A;  2V3Y A;  4ZNG A;  4ZWU A;  4FO8 A;  1M35 A;  4IEC A;  3TB5 A;  2Q92 A;  3FM3 A;  2EA4 A;  5CNX A;  3PKB A;  3BIT A;  1R5H A;  2NQ6 A;  2OAZ A;  2GTX A;  3PKA A;  2BB7 A;  2BWW A;  2BH3 A;  3Q6D A;  1YW7 A;  2BHD A;  1PV9 A;  4ZWO A;  2GA2 A;  2GG3 A;  1R58 A;  2B3H A;  2DFI A;  5CDV A;  5JI6 A;  3FMR A;  5D6F A;  1CHM A;  2V3X A;  4U69 A;  3MAT A;  2NQ7 A;  5JHU A;  4R60 A;  1XNZ A;  4RGZ 1;  4U6J A;  5JFR A;  2Q94 A;  2BWY A;  3FMQ A;  1KQ9 A;  4FO7 A;  4IF7 A;  3S6B A;  4U73 A;  1WL9 A;  2Q8K A;  2BHA A;  2GU7 A;  4S2R P;  1KP0 A;  1WBQ A;  4JUQ A;  2GU6 A;  1QXZ A;  1W2M A;  2BHC A;  2HOW A;  3CB5 A;  1KQ0 A;  1YJ3 A;  4A6W A;  2B3L A;  5FCF A;  4FLL A;  2EVO A;  1MAT A;  2V6C A;  4FKC A;  4QR8 A;  2BN7 A;  2GG8 A;  2GGB A;  1C21 A;  3BIQ A;  2BHB A;  1WL6 A;  2IW2 A;  2Q95 A;  4FUK A;  4KM3 A;  4ZWP A;  3L24 A;  2V3Z A;  4PNC A;  3RVA A;  3D27 A;  2BWX A;  4HXX A;  1WKM A;  3PKD A;  4IKT A;  4RZZ A;  2EA2 A;  2BWU A;  4OOK A;  2GU4 A;  4U76 A;  1YVM A;  2GG2 A;  1BOA A;  2G6P A;  1XGS A;  3MR1 A;  2BWT A;  1QXW A;  2GU5 A;  4A6V A;  4U6C A;  1WLR A;  2EVM A;  3BIP A;  1A16 A;  2OKN A;  4U75 A;  3TAV A;  2Q93 A;  4FLK A;  1JAW A;  5CIK A;  1Y1N A;  4S00 A;  2BWS A;  2P99 A;  4IU6 A;  2ZSG A;  5CLS A;  1XGM A;  4U70 A;  4IKS A;  2ADU A;  2P9A A;  2P98 A;  1C27 A;  2GG7 A;  1QZY A;  4RZY A;  3L7G A;  2GG5 A;  1YW8 A;  1C24 A;  3IU9 A;  2Q96 A;  4IKR A;  1W7V A;  2EVC A;  2MAT A;  1N51 A;  2B3K A;  1WY2 A;  1XGN A; 
#chains in the Genus database with same CATH homology
 4MAT A;  3CTZ A;  1QXY A;  3IU7 A;  1WN1 A;  4IKU A;  3MX6 A;  4EGE A;  5E5B A;  1B59 A;  3PKC A;  4FLI A;  3ROR A;  5FCH A;  5CE6 A;  4Z7M A;  4S01 A;  1BN5 A;  4U6Z A;  1O0X A;  3IG4 A;  3CB6 A;  5CDE A;  4U6E A;  4U71 A;  1B6A A;  2GGC A;  1XGO A;  2GG0 A;  4FLJ A;  5CDL A;  4IDY A;  2GZ5 A;  4U1B A;  2BWV A;  1C22 A;  1C23 A;  4PV4 A;  4B28 A;  3IU8 A;  3PKE A;  4S2T P;  5D6E A;  4U6W A;  1YW9 A;  4IPA A;  2GG9 A;  1R5G A;  2V3Y A;  4ZNG A;  4ZWU A;  4FO8 A;  1M35 A;  4IEC A;  3TB5 A;  2Q92 A;  3FM3 A;  2EA4 A;  5CNX A;  3PKB A;  3BIT A;  1R5H A;  2NQ6 A;  2OAZ A;  2GTX A;  3PKA A;  2BB7 A;  2BWW A;  2BH3 A;  3Q6D A;  1YW7 A;  2BHD A;  1PV9 A;  4ZWO A;  2GA2 A;  2GG3 A;  1R58 A;  2B3H A;  2DFI A;  5CDV A;  5JI6 A;  3FMR A;  5D6F A;  1CHM A;  2V3X A;  4U69 A;  3MAT A;  2NQ7 A;  5JHU A;  4R60 A;  1XNZ A;  4RGZ 1;  4U6J A;  5JFR A;  2Q94 A;  2BWY A;  3FMQ A;  1KQ9 A;  4FO7 A;  4IF7 A;  3S6B A;  4U73 A;  1WL9 A;  2Q8K A;  2BHA A;  2GU7 A;  4S2R P;  1KP0 A;  1WBQ A;  4JUQ A;  2GU6 A;  1QXZ A;  1W2M A;  2BHC A;  2HOW A;  3CB5 A;  1KQ0 A;  1YJ3 A;  4A6W A;  2B3L A;  5FCF A;  4FLL A;  2EVO A;  1MAT A;  2V6C A;  4FKC A;  4QR8 A;  2BN7 A;  2GG8 A;  2GGB A;  1C21 A;  3BIQ A;  2BHB A;  1WL6 A;  2IW2 A;  2Q95 A;  4FUK A;  4KM3 A;  4ZWP A;  3L24 A;  2V3Z A;  4PNC A;  3RVA A;  3D27 A;  2BWX A;  4HXX A;  1WKM A;  3PKD A;  4IKT A;  4RZZ A;  2EA2 A;  2BWU A;  4OOK A;  2GU4 A;  4U76 A;  1YVM A;  2GG2 A;  1BOA A;  2G6P A;  1XGS A;  3MR1 A;  2BWT A;  1QXW A;  2GU5 A;  4A6V A;  4U6C A;  1WLR A;  2EVM A;  3BIP A;  1A16 A;  2OKN A;  4U75 A;  3TAV A;  2Q93 A;  4FLK A;  1JAW A;  5CIK A;  1Y1N A;  4S00 A;  2BWS A;  2P99 A;  4IU6 A;  2ZSG A;  5CLS A;  1XGM A;  4U70 A;  4IKS A;  2ADU A;  2P9A A;  2P98 A;  1C27 A;  2GG7 A;  1QZY A;  4RZY A;  3L7G A;  2GG5 A;  1YW8 A;  1C24 A;  3IU9 A;  2Q96 A;  4IKR A;  1W7V A;  2EVC A;  2MAT A;  1N51 A;  2B3K A;  1WY2 A;  1XGN A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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