4FQDA

Crystal structure of the enolpyruvyl transferase niko from streptomyces tendae
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
448
structure length
436
Chain Sequence
PGEPLLEIHGGNRLSGAVRTSGFKHSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHYDGADETFTVDASAWDRAELPADLVGRIHGSLYLLPALVSRNGVARLSARPDEHLLDVMGRFGVTTRLTADGSVDLTAQRLTPCTIDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQHPYLKPDVTDMVTVLRDLGADIEFAGPETWVIHGRGPESLHRPVDVTLIPDLIEVVTWICAGVLLADEPLRITGPGIDRAVHALAPEFDLLDRMGVRVDVGADEVTAHPLTKPLRPVEFTAMSRGVFSDSQPFLALLGAYAEGPTYIREAVWEHRFGFAPELEALGIRTAVDDTVLRVDGPCPPHRPGTDLRATDLRAAAVLLLAALAVPGRTTLRNHHHLARGYRDLVEDLVKLGADIRHTTAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords NikO protein
publication title Structural and functional characterization of NikO, an enolpyruvyl transferase essential in nikkomycin biosynthesis.
pubmed doi rcsb
source organism Streptomyces tendae
total genus 136
structure length 436
sequence length 448
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4fqdA01
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 4fqdA02
1Q3GA 1X8TA 2O0XA 1G6TA 4GFPA 2O0EA 4E7EA 1UAEA 2BJBA 3RMTA 2QFUA 1RF6A 3KQAA 3V5VA 3SG1A 2O0BA 3R38A 5BS5A 2PQBA 1MI4A 4EIIA 5BQ2A 2AA9A 1X8RA 3LTHA 3NVSA 2O0DA 2PQDA 3FK0A 1A2NA 2QFTA 3TR1A 1DLGA 4E7BA 4E7FA 4R7UA 3FJXA 2QFSA 3ROIA 5BUFA 1RF5A 3TI2A 3ZH3A 3VCYA 3KQJA 3SPBA 3SWDA 4E7DA 3SU9A 2PQ9A 3ZH4A 3SWGA 3FJZA 1EJCA 4N3PA 3ISSA 1EJDA 3V4TA 2YVWA 3UPKA 2GGAA 2GG6A 5U4HA 1NAWA 2RL2A 1G6SA 3FK1A 3SWAA 4E7GA 1EYNA 2PQCA 4FQDA 3SWIA 2GG4A 2AAYA 1YBGA 2O0ZA 2O15A 3SWEA 4E7CA 1RF4A 2QFQA 2Z2CA 1RYWA 3SLHA 1P88A 2RL1A 4EGRA 4ZNDA 1P89A 2GGDA 3SWQA 3KR6A 1Q36A
chains in the Genus database with same CATH superfamily
3PQVA 1Q3GA 3TW3A 1X8TA 2O0XA 1G6TA 4GFPA 2O0EA 4E7EA 1UAEA 2BJBA 3RMTA 2QFUA 1RF6A 3KQAA 3V5VA 3SG1A 2O0BA 3R38A 5BS5A 2PQBA 1MI4A 4EIIA 5BQ2A 2AA9A 1X8RA 3LTHA 3NVSA 2O0DA 2PQDA 3FK0A 1A2NA 2QFTA 3TR1A 1DLGA 4E7BA 4E7FA 4R7UA 3FJXA 2QFSA 3ROIA 5BUFA 1RF5A 3TI2A 3ZH3A 3VCYA 3KQJA 3SPBA 3SWDA 4E7DA 3SU9A 2PQ9A 3ZH4A 3SWGA 3FJZA 1EJCA 4N3PA 3ISSA 1EJDA 3KGDA 3V4TA 2YVWA 3UPKA 2GGAA 2GG6A 5U4HA 3TUTA 4CLQA 1NAWA 2RL2A 1QMHA 1G6SA 3TV1A 3FK1A 3SWAA 4E7GA 1EYNA 2PQCA 4FQDA 3SWIA 2GG4A 2AAYA 1YBGA 4O8JA 2O0ZA 3TUXA 2O15A 3SWEA 4E7CA 1RF4A 2QFQA 2Z2CA 4O89A 1RYWA 1QMIA 3SLHA 1P88A 2RL1A 4EGRA 4ZNDA 1P89A 2GGDA 3SWQA 3KR6A 1Q36A
chains in the Genus database with same CATH topology
1Q3GA 1X8TA 2O0XA 1G6TA 4GFPA 2O0EA 4E7EA 1UAEA 2BJBA 3RMTA 2QFUA 1RF6A 3KQAA 3V5VA 3SG1A 2O0BA 3R38A 5BS5A 2PQBA 1MI4A 4EIIA 5BQ2A 2AA9A 1X8RA 3LTHA 3NVSA 2O0DA 2PQDA 3FK0A 1A2NA 2QFTA 3TR1A 1DLGA 4E7BA 4E7FA 4R7UA 3FJXA 2QFSA 3ROIA 5BUFA 1RF5A 3TI2A 3ZH3A 3VCYA 3KQJA 3SPBA 3SWDA 4E7DA 3SU9A 2PQ9A 3ZH4A 3SWGA 3FJZA 1EJCA 4N3PA 3ISSA 1EJDA 3V4TA 2YVWA 3UPKA 2GGAA 2GG6A 5U4HA 1NAWA 2RL2A 1G6SA 3FK1A 3SWAA 4E7GA 1EYNA 2PQCA 4FQDA 3SWIA 2GG4A 2AAYA 1YBGA 2O0ZA 2O15A 3SWEA 4E7CA 1RF4A 2QFQA 2Z2CA 1RYWA 3SLHA 1P88A 2RL1A 4EGRA 4ZNDA 1P89A 2GGDA 3SWQA 3KR6A 1Q36A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q3G A;  1X8T A;  2O0X A;  1G6T A;  4GFP A;  2O0E A;  4E7E A;  1UAE A;  2BJB A;  3RMT A;  2QFU A;  1RF6 A;  3KQA A;  3V5V A;  3SG1 A;  2O0B A;  3R38 A;  5BS5 A;  2PQB A;  1MI4 A;  4EII A;  5BQ2 A;  2AA9 A;  1X8R A;  3LTH A;  3NVS A;  2O0D A;  2PQD A;  3FK0 A;  1A2N A;  2QFT A;  3TR1 A;  1DLG A;  4E7B A;  4E7F A;  4R7U A;  3FJX A;  2QFS A;  3ROI A;  5BUF A;  1RF5 A;  3TI2 A;  3ZH3 A;  3VCY A;  3KQJ A;  3SPB A;  3SWD A;  4E7D A;  3SU9 A;  2PQ9 A;  3ZH4 A;  3SWG A;  3FJZ A;  1EJC A;  4N3P A;  3ISS A;  1EJD A;  3V4T A;  2YVW A;  3UPK A;  2GGA A;  2GG6 A;  5U4H A;  1NAW A;  2RL2 A;  1G6S A;  3FK1 A;  3SWA A;  4E7G A;  1EYN A;  2PQC A;  4FQD A;  3SWI A;  2GG4 A;  2AAY A;  1YBG A;  2O0Z A;  2O15 A;  3SWE A;  4E7C A;  1RF4 A;  2QFQ A;  2Z2C A;  1RYW A;  3SLH A;  1P88 A;  2RL1 A;  4EGR A;  4ZND A;  1P89 A;  2GGD A;  3SWQ A;  3KR6 A;  1Q36 A; 
#chains in the Genus database with same CATH topology
 3PQV A;  1Q3G A;  3TW3 A;  1X8T A;  2O0X A;  1G6T A;  4GFP A;  2O0E A;  4E7E A;  1UAE A;  2BJB A;  3RMT A;  2QFU A;  1RF6 A;  3KQA A;  3V5V A;  3SG1 A;  2O0B A;  3R38 A;  5BS5 A;  2PQB A;  1MI4 A;  4EII A;  5BQ2 A;  2AA9 A;  1X8R A;  3LTH A;  3NVS A;  2O0D A;  2PQD A;  3FK0 A;  1A2N A;  2QFT A;  3TR1 A;  1DLG A;  4E7B A;  4E7F A;  4R7U A;  3FJX A;  2QFS A;  3ROI A;  5BUF A;  1RF5 A;  3TI2 A;  3ZH3 A;  3VCY A;  3KQJ A;  3SPB A;  3SWD A;  4E7D A;  3SU9 A;  2PQ9 A;  3ZH4 A;  3SWG A;  3FJZ A;  1EJC A;  4N3P A;  3ISS A;  1EJD A;  3KGD A;  3V4T A;  2YVW A;  3UPK A;  2GGA A;  2GG6 A;  5U4H A;  3TUT A;  4CLQ A;  1NAW A;  2RL2 A;  1QMH A;  1G6S A;  3TV1 A;  3FK1 A;  3SWA A;  4E7G A;  1EYN A;  2PQC A;  4FQD A;  3SWI A;  2GG4 A;  2AAY A;  1YBG A;  4O8J A;  2O0Z A;  3TUX A;  2O15 A;  3SWE A;  4E7C A;  1RF4 A;  2QFQ A;  2Z2C A;  4O89 A;  1RYW A;  1QMI A;  3SLH A;  1P88 A;  2RL1 A;  4EGR A;  4ZND A;  1P89 A;  2GGD A;  3SWQ A;  3KR6 A;  1Q36 A; 
#chains in the Genus database with same CATH homology
 1Q3G A;  1X8T A;  2O0X A;  1G6T A;  4GFP A;  2O0E A;  4E7E A;  1UAE A;  2BJB A;  3RMT A;  2QFU A;  1RF6 A;  3KQA A;  3V5V A;  3SG1 A;  2O0B A;  3R38 A;  5BS5 A;  2PQB A;  1MI4 A;  4EII A;  5BQ2 A;  2AA9 A;  1X8R A;  3LTH A;  3NVS A;  2O0D A;  2PQD A;  3FK0 A;  1A2N A;  2QFT A;  3TR1 A;  1DLG A;  4E7B A;  4E7F A;  4R7U A;  3FJX A;  2QFS A;  3ROI A;  5BUF A;  1RF5 A;  3TI2 A;  3ZH3 A;  3VCY A;  3KQJ A;  3SPB A;  3SWD A;  4E7D A;  3SU9 A;  2PQ9 A;  3ZH4 A;  3SWG A;  3FJZ A;  1EJC A;  4N3P A;  3ISS A;  1EJD A;  3V4T A;  2YVW A;  3UPK A;  2GGA A;  2GG6 A;  5U4H A;  1NAW A;  2RL2 A;  1G6S A;  3FK1 A;  3SWA A;  4E7G A;  1EYN A;  2PQC A;  4FQD A;  3SWI A;  2GG4 A;  2AAY A;  1YBG A;  2O0Z A;  2O15 A;  3SWE A;  4E7C A;  1RF4 A;  2QFQ A;  2Z2C A;  1RYW A;  3SLH A;  1P88 A;  2RL1 A;  4EGR A;  4ZND A;  1P89 A;  2GGD A;  3SWQ A;  3KR6 A;  1Q36 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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