4GC2A

Crystal structure of the bacteriocin llpa from pseudomonas sp. in complex with glcnac beta(1-2)man alpha(1-3)[glcnac beta(1-2)man alpha(1-6)]man
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
275
structure length
275
Chain Sequence
AGRTRIPFNGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDGNLVIQDNGATVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVDSLALWNGTPAIPLVPGAIDSLLLAPGSELVQGVVYGAGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKPVWARFGFQPTYRHIRKINPDQKPIDIWTWHF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords Putidacin L1
publication title Structural Determinants for Activity and Specificity of the Bacterial Toxin LlpA.
pubmed doi rcsb
source organism Pseudomonas sp. bw11m1
total genus 68
structure length 275
sequence length 275
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 4gc2A01
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 4gc2A02
2.90.10.20 Mainly Beta Orthogonal Prism Agglutinin, subunit A Agglutinin, subunit A 4gc2A03
4PDTA 1BWUP 3M7JA 5J76A 5J76B 4OITA 1XD5A 5D5GA 5D5GB 4OKCA 3MEZA 5D9ZA 2DPFA 3M7HA 1BWUQ 3DZWA 4OIZA 3MEZB 1BWUD 1MSAA 3A0DA 1BWUA 4GC2A 4H3OA 5D9ZB 1KJ1D 2D04A 5T1XA 1KJ1A 2D04B 5T1XB 1XD6A 4LEDA 4LE7A 1NPLA 1DLPA 3A0EA 3R0EA 3R0EB 4LEAA 1NIVA 3A0CA 1B2PA 4GC1A 5T20A 1JPCA 4TKCA 5T20B
chains in the Genus database with same CATH superfamily
4PDTA 1BWUP 3M7JA 5J76A 5J76B 4OITA 1XD5A 5D5GA 5D5GB 4OKCA 3MEZA 5D9ZA 2DPFA 3M7HA 1BWUQ 3DZWA 4OIZA 3MEZB 1BWUD 1MSAA 3A0DA 1BWUA 4GC2A 4H3OA 5D9ZB 1KJ1D 2D04A 5T1XA 1KJ1A 2D04B 4LEDA 1XD6A 5T1XB 4LE7A 1NPLA 1DLPA 3A0EA 3R0EA 3R0EB 4LEAA 1NIVA 3A0CA 1B2PA 4GC1A 5T20A 1JPCA 4TKCA 5T20B
chains in the Genus database with same CATH topology
4PDTA 1BWUP 3M7JA 5J76A 5J76B 4OITA 1XD5A 5D5GA 5D5GB 4OKCA 3MEZA 5D9ZA 2DPFA 3M7HA 1BWUQ 3DZWA 4OIZA 3MEZB 1BWUD 1MSAA 3A0DA 1BWUA 4GC2A 4H3OA 5D9ZB 1KJ1D 2D04A 5T1XA 1KJ1A 2D04B 5T1XB 1XD6A 4LEDA 4LE7A 1NPLA 1DLPA 3A0EA 3R0EA 3R0EB 4LEAA 1NIVA 3A0CA 1B2PA 4GC1A 5T20A 1JPCA 4TKCA 5T20B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PDT A;  1BWU P;  3M7J A;  5J76 A;  5J76 B;  4OIT A;  1XD5 A;  5D5G A;  5D5G B;  4OKC A;  3MEZ A;  5D9Z A;  2DPF A;  3M7H A;  1BWU Q;  3DZW A;  4OIZ A;  3MEZ B;  1BWU D;  1MSA A;  3A0D A;  1BWU A;  4GC2 A;  4H3O A;  5D9Z B;  1KJ1 D;  2D04 A;  5T1X A;  1KJ1 A;  2D04 B;  5T1X B;  1XD6 A;  4LED A;  4LE7 A;  1NPL A;  1DLP A;  3A0E A;  3R0E A;  3R0E B;  4LEA A;  1NIV A;  3A0C A;  1B2P A;  4GC1 A;  5T20 A;  1JPC A;  4TKC A;  5T20 B; 
#chains in the Genus database with same CATH topology
 4PDT A;  1BWU P;  3M7J A;  5J76 A;  5J76 B;  4OIT A;  1XD5 A;  5D5G A;  5D5G B;  4OKC A;  3MEZ A;  5D9Z A;  2DPF A;  3M7H A;  1BWU Q;  3DZW A;  4OIZ A;  3MEZ B;  1BWU D;  1MSA A;  3A0D A;  1BWU A;  4GC2 A;  4H3O A;  5D9Z B;  1KJ1 D;  2D04 A;  5T1X A;  1KJ1 A;  2D04 B;  4LED A;  1XD6 A;  5T1X B;  4LE7 A;  1NPL A;  1DLP A;  3A0E A;  3R0E A;  3R0E B;  4LEA A;  1NIV A;  3A0C A;  1B2P A;  4GC1 A;  5T20 A;  1JPC A;  4TKC A;  5T20 B; 
#chains in the Genus database with same CATH homology
 4PDT A;  1BWU P;  3M7J A;  5J76 A;  5J76 B;  4OIT A;  1XD5 A;  5D5G A;  5D5G B;  4OKC A;  3MEZ A;  5D9Z A;  2DPF A;  3M7H A;  1BWU Q;  3DZW A;  4OIZ A;  3MEZ B;  1BWU D;  1MSA A;  3A0D A;  1BWU A;  4GC2 A;  4H3O A;  5D9Z B;  1KJ1 D;  2D04 A;  5T1X A;  1KJ1 A;  2D04 B;  5T1X B;  1XD6 A;  4LED A;  4LE7 A;  1NPL A;  1DLP A;  3A0E A;  3R0E A;  3R0E B;  4LEA A;  1NIV A;  3A0C A;  1B2P A;  4GC1 A;  5T20 A;  1JPC A;  4TKC A;  5T20 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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