4H4JA

Crystal structure of a n-acetylmuramoyl-l-alanine amidase (bacuni_02947) from bacteroides uniformis atcc 8492 at 1.15 a resolution
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
240
structure length
236
Chain Sequence
GQGGKDMLSNGIKYLDVPYVAHTLEADGPEELVINCDEVDCTTLVEYVLAETLTPKLISESAFADNLQKIRYRDGKIDGYTSRLHYIADWINNGVRNGFLQDVTGAMSPDTERLSISYMSSHPQLYKQLANSPENVAKMKKIEQSLSGKEVHYLPKAKLPADGLPWIKDGDIIAITTNTPGLDVAHMGIAFYADNKLLLVHASSTDKKVVVSKVPLSQMLKDNNKWTGIRVLRMKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein
publication title Crystal structure of a hypothetical protein (BACUNI_02947) from Bacteroides uniformis ATCC 8492 at 1.15 A resolution
rcsb
source organism Bacteroides uniformis
total genus 80
structure length 236
sequence length 240
ec nomenclature
pdb deposition date 2012-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07313 DUF1460 Protein of unknown function (DUF1460)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3670.10 Mainly Alpha Orthogonal Bundle Putative xylanase fold Putative xylanase like domain 4h4jA01
2.30.260.10 Mainly Beta Roll putative xylanase like fold putative xylanase like domain 4h4jA02
4Q5KA 4H4JA 2IM9A 4Q68A 2P1GA
chains in the Genus database with same CATH superfamily
4Q5KA 4H4JA 2IM9A 4Q68A 2P1GA
chains in the Genus database with same CATH topology
4Q5KA 4H4JA 2IM9A 4Q68A 2P1GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q5K A;  4H4J A;  2IM9 A;  4Q68 A;  2P1G A; 
#chains in the Genus database with same CATH topology
 4Q5K A;  4H4J A;  2IM9 A;  4Q68 A;  2P1G A; 
#chains in the Genus database with same CATH homology
 4Q5K A;  4H4J A;  2IM9 A;  4Q68 A;  2P1G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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