4I1QA

Crystal structure of hbrap1 n-bar domain
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
200
structure length
200
Chain Sequence
KDERFEQSANNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords Bridging integrator 2
publication title Bin2 Is a Membrane Sculpting N-BAR Protein That Influences Leucocyte Podosomes, Motility and Phagocytosis
pubmed doi rcsb
source organism Homo sapiens
total genus 89
structure length 200
sequence length 200
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-11-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4i1qA00
2D4CA 2V0OA 2X3VA 1ZWWA 1Y2OA 3HAIA 5C5BB 1URUA 2Z0OA 2Q13A 3HAHA 1WDZA 3QNIA 3Q0KA 3SYVA 4AKVA 3QWEA 4DCNC 4WPEA 3I2WA 3ACOA 2EFLA 2YKTA 4WPCA 4DYLA 1I4TA 2C08A 2X3WA 3CAZA 4BNEA 1X03A 3G9GA 3PLTA 2RAKA 3Q84A 2Z0VA 1I4LA 5C5BA 4NQIA 4AVMA 4NSWA 2X3XA 4FZSA 1X04A 3HAJA 3OK8A 2EFKA 3M3WA 1I4DA 4H8SA 2RAIA 2Q12A 2D1LA 3QE6A 2FICA 1I49A 3DYTA 2RAJA 4I1QA 3ABHA 4ATMA 2Z0NA 3LLLA 2ELBA 3SOGA
chains in the Genus database with same CATH superfamily
4JWCA 2Z0OA 3Q0KA 1DKZA 2JNKA 5TKYA 3BVWA 3BUDA 4IWQA 3UITA 4IWPA 4EZSA 3RPMA 3HAJA 2OW7A 3BLBA 4PO2A 4EZRA 3SOGA 4R5LA 2ELBA 4UDXX 1OA0A 1ZWWA 4EZXA 1R33A 3EJRA 3I2WA 2EFLA 2C08A 1JQKA 2F1BA 1W9MA 4EZVA 2WYIA 3BUBA 1X04A 1SU7A 1I4DA 4AZ6A 3O3MB 2X3VA 3SYVA 4HR1A 3ERCC 4DYLA 1I4TA 4AZHA 3DX2A 2RAKA 3KAVA 3L3PA 1HXKA 3ER8C 3B51X 3DYTA 4JNEA 5FLEX 4FZPA 3T46A 3FD9A 2YIBA 2F7PA 4B9QA 4NPHA 3CZNA 3DX4A 4JN4A 4EZPA 1OA1A 4EZQA 3EJQA 3B53X 2YLAA 3M3WA 3BUQA 3DDFA 2YL6A 4E81A 2N3KA 3C7NA 2QXLA 3BUIA 2LXYA 1HWWA 1GNTA 1MJGA 3ABHA 1UPXA 4KIKB 2Z0NA 4EZOA 5C5BB 3HAIA 2EX3B 2OO2A 2YLLA 1ZYLA 5KBPA 1I4LA 3VEBA 3CZSA 4NSWA 3DPQA 2EFKA 1SU6A 2YL8A 2O0I1 1SU8A 2Q13A 3QNIA 3O3NB 3QWEA 3T4AG 1QX1A 4R5KA 2YI9A 3ACOA 1TQSA 2X5CA 3D2EA 4AZ7A 2OBMA 2RT6A 3DX1A 1E9VA 2PMRA 4JWDA 2V0OA 3OHXM 3RV1A 3DPOA 1PS3A 1TQUA 1QWNA 3HAHA 4EZWA 2F7RA 3D50A 2ALWA 4R5JA 1GNLA 4JL9A 3DDGA 3PLTA 3Q84A 3L3OM 1TQTA 3B52X 4IM0A 3BVVA 3A98A 3D4YA 4JLCA 2RAJA 4EZUA 3VEAA 4H6IA 4EZYA 5E84A 1O7DB 2X3WA 4IM2A 1X03A 3D4ZA 4JNFA 3EJSA 1SUFA 2YL5A 4E3CA 2Z8YA 4AZBA 4I1QA 3D2FA 4ATMA 5FIGA 4G6QA 2YI8A 3QA8A 3I04A 4AKVA 3BVXA 2F7OA 2F1AA 3EJTA 4AZGA 2GF4A 4AZIA 2MI7A 1TQWA 4FZSA 3LVTA 1R5EA 2GA9D 3KAWA 4HY9A 1YWMA 4IWOA 3VKHA 1QWUA 3D51A 4EZZA 4IM3A 4F01A 1URUA 1E1DA 1R34A 4DCNC 3BUPA 3GI7A 1O7DC 1U00A 2WYHA 2X3XA 3EJPA 4FZOA 3DX3A 2KHOA 2LM0A 3OK8A 4H8SA 2RAIA 2YL9A 2D1LA 3QE6A 3DX0A 2ND1A 2OZNB 2YIVX 2D4CA 1GN9A 2NCZA 1WDZA 3ER9B 4JWEA 4UDYX 3OWGA 4R5GA 3D52A 3F7WA 2Z0VA 2PY6A 2EWFA 3BVTA 3O3OB 2FICA 1E2UA 4EZNA 3T48A 1DKYA 2F18A 2OW6A 4R5IA 4KIKA 3CV5A 2GAFD 4BNEA 1HTYA 3G9GA 5C5BA 4NQIA 3CVRA 2YIAA 2QKWA 2ND0A 4JWIA 2QFFA 3CKDA 1OAOA 3EJUA 4WPCA 4AVMA 4AZCB 4F00A 2F7QA 3DPPA 3T49A 2Q12A 3RV0A 4EZTA 1DKXA 4FM3A 2JNSA 2OBLA 3I39X 3QNJA 2FYVA 2YKTA 4HYBA 3CAZA 3T47A 4H6HA 1LQ7A 3I01A 4D8JA 2WINM 3LLLA 1Y2OA 3LMFA 4IW0A 4WPEA 2ZXQA 1TQVA 4M0MA 3ZEDA 4AZ5A 4HR1B 1I49A 3BVUA 3KDRA 4AZCA
chains in the Genus database with same CATH topology
2D4CA 2V0OA 2X3VA 1ZWWA 1Y2OA 3HAIA 5C5BB 1URUA 2Z0OA 2Q13A 3HAHA 1WDZA 3QNIA 3Q0KA 3SYVA 4AKVA 3QWEA 4DCNC 4WPEA 3I2WA 3ACOA 2EFLA 2YKTA 4WPCA 4DYLA 1I4TA 2C08A 2X3WA 3CAZA 4BNEA 1X03A 3G9GA 3PLTA 2RAKA 3Q84A 2Z0VA 1I4LA 5C5BA 4NQIA 4AVMA 4NSWA 2X3XA 4FZSA 1X04A 3HAJA 3OK8A 2EFKA 3M3WA 1I4DA 4H8SA 2RAIA 2Q12A 2D1LA 3QE6A 2FICA 1I49A 3DYTA 2RAJA 4I1QA 3ABHA 4ATMA 2Z0NA 3LLLA 2ELBA 3SOGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D4C A;  2V0O A;  2X3V A;  1ZWW A;  1Y2O A;  3HAI A;  5C5B B;  1URU A;  2Z0O A;  2Q13 A;  3HAH A;  1WDZ A;  3QNI A;  3Q0K A;  3SYV A;  4AKV A;  3QWE A;  4DCN C;  4WPE A;  3I2W A;  3ACO A;  2EFL A;  2YKT A;  4WPC A;  4DYL A;  1I4T A;  2C08 A;  2X3W A;  3CAZ A;  4BNE A;  1X03 A;  3G9G A;  3PLT A;  2RAK A;  3Q84 A;  2Z0V A;  1I4L A;  5C5B A;  4NQI A;  4AVM A;  4NSW A;  2X3X A;  4FZS A;  1X04 A;  3HAJ A;  3OK8 A;  2EFK A;  3M3W A;  1I4D A;  4H8S A;  2RAI A;  2Q12 A;  2D1L A;  3QE6 A;  2FIC A;  1I49 A;  3DYT A;  2RAJ A;  4I1Q A;  3ABH A;  4ATM A;  2Z0N A;  3LLL A;  2ELB A;  3SOG A; 
#chains in the Genus database with same CATH topology
 4JWC A;  2Z0O A;  3Q0K A;  1DKZ A;  2JNK A;  5TKY A;  3BVW A;  3BUD A;  4IWQ A;  3UIT A;  4IWP A;  4EZS A;  3RPM A;  3HAJ A;  2OW7 A;  3BLB A;  4PO2 A;  4EZR A;  3SOG A;  4R5L A;  2ELB A;  4UDX X;  1OA0 A;  1ZWW A;  4EZX A;  1R33 A;  3EJR A;  3I2W A;  2EFL A;  2C08 A;  1JQK A;  2F1B A;  1W9M A;  4EZV A;  2WYI A;  3BUB A;  1X04 A;  1SU7 A;  1I4D A;  4AZ6 A;  3O3M B;  2X3V A;  3SYV A;  4HR1 A;  3ERC C;  4DYL A;  1I4T A;  4AZH A;  3DX2 A;  2RAK A;  3KAV A;  3L3P A;  1HXK A;  3ER8 C;  3B51 X;  3DYT A;  4JNE A;  5FLE X;  4FZP A;  3T46 A;  3FD9 A;  2YIB A;  2F7P A;  4B9Q A;  4NPH A;  3CZN A;  3DX4 A;  4JN4 A;  4EZP A;  1OA1 A;  4EZQ A;  3EJQ A;  3B53 X;  2YLA A;  3M3W A;  3BUQ A;  3DDF A;  2YL6 A;  4E81 A;  2N3K A;  3C7N A;  2QXL A;  3BUI A;  2LXY A;  1HWW A;  1GNT A;  1MJG A;  3ABH A;  1UPX A;  4KIK B;  2Z0N A;  4EZO A;  5C5B B;  3HAI A;  2EX3 B;  2OO2 A;  2YLL A;  1ZYL A;  5KBP A;  1I4L A;  3VEB A;  3CZS A;  4NSW A;  3DPQ A;  2EFK A;  1SU6 A;  2YL8 A;  2O0I 1;  1SU8 A;  2Q13 A;  3QNI A;  3O3N B;  3QWE A;  3T4A G;  1QX1 A;  4R5K A;  2YI9 A;  3ACO A;  1TQS A;  2X5C A;  3D2E A;  4AZ7 A;  2OBM A;  2RT6 A;  3DX1 A;  1E9V A;  2PMR A;  4JWD A;  2V0O A;  3OHX M;  3RV1 A;  3DPO A;  1PS3 A;  1TQU A;  1QWN A;  3HAH A;  4EZW A;  2F7R A;  3D50 A;  2ALW A;  4R5J A;  1GNL A;  4JL9 A;  3DDG A;  3PLT A;  3Q84 A;  3L3O M;  1TQT A;  3B52 X;  4IM0 A;  3BVV A;  3A98 A;  3D4Y A;  4JLC A;  2RAJ A;  4EZU A;  3VEA A;  4H6I A;  4EZY A;  5E84 A;  1O7D B;  2X3W A;  4IM2 A;  1X03 A;  3D4Z A;  4JNF A;  3EJS A;  1SUF A;  2YL5 A;  4E3C A;  2Z8Y A;  4AZB A;  4I1Q A;  3D2F A;  4ATM A;  5FIG A;  4G6Q A;  2YI8 A;  3QA8 A;  3I04 A;  4AKV A;  3BVX A;  2F7O A;  2F1A A;  3EJT A;  4AZG A;  2GF4 A;  4AZI A;  2MI7 A;  1TQW A;  4FZS A;  3LVT A;  1R5E A;  2GA9 D;  3KAW A;  4HY9 A;  1YWM A;  4IWO A;  3VKH A;  1QWU A;  3D51 A;  4EZZ A;  4IM3 A;  4F01 A;  1URU A;  1E1D A;  1R34 A;  4DCN C;  3BUP A;  3GI7 A;  1O7D C;  1U00 A;  2WYH A;  2X3X A;  3EJP A;  4FZO A;  3DX3 A;  2KHO A;  2LM0 A;  3OK8 A;  4H8S A;  2RAI A;  2YL9 A;  2D1L A;  3QE6 A;  3DX0 A;  2ND1 A;  2OZN B;  2YIV X;  2D4C A;  1GN9 A;  2NCZ A;  1WDZ A;  3ER9 B;  4JWE A;  4UDY X;  3OWG A;  4R5G A;  3D52 A;  3F7W A;  2Z0V A;  2PY6 A;  2EWF A;  3BVT A;  3O3O B;  2FIC A;  1E2U A;  4EZN A;  3T48 A;  1DKY A;  2F18 A;  2OW6 A;  4R5I A;  4KIK A;  3CV5 A;  2GAF D;  4BNE A;  1HTY A;  3G9G A;  5C5B A;  4NQI A;  3CVR A;  2YIA A;  2QKW A;  2ND0 A;  4JWI A;  2QFF A;  3CKD A;  1OAO A;  3EJU A;  4WPC A;  4AVM A;  4AZC B;  4F00 A;  2F7Q A;  3DPP A;  3T49 A;  2Q12 A;  3RV0 A;  4EZT A;  1DKX A;  4FM3 A;  2JNS A;  2OBL A;  3I39 X;  3QNJ A;  2FYV A;  2YKT A;  4HYB A;  3CAZ A;  3T47 A;  4H6H A;  1LQ7 A;  3I01 A;  4D8J A;  2WIN M;  3LLL A;  1Y2O A;  3LMF A;  4IW0 A;  4WPE A;  2ZXQ A;  1TQV A;  4M0M A;  3ZED A;  4AZ5 A;  4HR1 B;  1I49 A;  3BVU A;  3KDR A;  4AZC A; 
#chains in the Genus database with same CATH homology
 2D4C A;  2V0O A;  2X3V A;  1ZWW A;  1Y2O A;  3HAI A;  5C5B B;  1URU A;  2Z0O A;  2Q13 A;  3HAH A;  1WDZ A;  3QNI A;  3Q0K A;  3SYV A;  4AKV A;  3QWE A;  4DCN C;  4WPE A;  3I2W A;  3ACO A;  2EFL A;  2YKT A;  4WPC A;  4DYL A;  1I4T A;  2C08 A;  2X3W A;  3CAZ A;  4BNE A;  1X03 A;  3G9G A;  3PLT A;  2RAK A;  3Q84 A;  2Z0V A;  1I4L A;  5C5B A;  4NQI A;  4AVM A;  4NSW A;  2X3X A;  4FZS A;  1X04 A;  3HAJ A;  3OK8 A;  2EFK A;  3M3W A;  1I4D A;  4H8S A;  2RAI A;  2Q12 A;  2D1L A;  3QE6 A;  2FIC A;  1I49 A;  3DYT A;  2RAJ A;  4I1Q A;  3ABH A;  4ATM A;  2Z0N A;  3LLL A;  2ELB A;  3SOG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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