4IO9G

Crystal structure of compound 4d bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
142
structure length
142
Chain Sequence
KTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 26
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 4io9G00
1W2BI 3CD6J 3I56J 3CCUJ 3G4SJ 1YJNJ 1VQ4J 1N8RK 1QVFI 1KC8K 1Q81K 2ZJQG 3G71J 3CCRJ 1K8AK 1KD1K 3CPWI 1S72J 3CCEJ 1NJIK 1VQMJ 1YIJJ 3CCVJ 3CC4J 4IOCG 1VQOJ 3CC7J 3CCJJ 1VQPJ 1KQSI 1VQKJ 3DLLG 3OW2I 2ZJRG 1VQ7J 3CCLJ 4IO9G 3CCQJ 3CCSJ 2OTJJ 1J3AA 1VQLJ 1VQ8J 1VQ9J 1JJ2I 2QEXJ 4V19N 1VQ5J 1Q86K 1VQNJ 4IOAG 3PIPG 1VQ6J 3CMAJ 2OTLJ 2ZJPG 2QA4J 1YITJ 3CMEJ 1YHQJ 3CC2J 3CF5G 3CCMJ 1M90K 1K9MK 3G6EJ 3I55J 3PIOG 3J7YK 1YI2J 1K73K 1Q82K 1M1KK 1YJWJ 1YJ9J 1QVGI 1Q7YK 3CXCI
chains in the Genus database with same CATH superfamily
1W2BI 3CD6J 3I56J 3CCUJ 3G4SJ 1YJNJ 1VQ4J 1N8RK 1QVFI 1KC8K 1Q81K 2ZJQG 3G71J 3CCRJ 1K8AK 1KD1K 3CPWI 1S72J 3CCEJ 1NJIK 1VQMJ 1YIJJ 3CCVJ 3CC4J 4IOCG 1VQOJ 3CC7J 3CCJJ 1VQPJ 1KQSI 1VQKJ 3DLLG 3OW2I 2ZJRG 1VQ7J 3CCLJ 4IO9G 3CCQJ 3CCSJ 2OTJJ 1J3AA 1VQLJ 1VQ8J 1VQ9J 1JJ2I 2QEXJ 4V19N 1VQ5J 1Q86K 1VQNJ 4IOAG 3PIPG 1VQ6J 3CMAJ 2OTLJ 2ZJPG 2QA4J 1YITJ 3CMEJ 1YHQJ 3CC2J 3CF5G 3CCMJ 1M90K 1K9MK 3G6EJ 3I55J 3PIOG 3J7YK 1YI2J 1K73K 1Q82K 1M1KK 1YJWJ 1YJ9J 1QVGI 1Q7YK 3CXCI
chains in the Genus database with same CATH topology
1W2BI 3CD6J 3I56J 3CCUJ 3G4SJ 1YJNJ 1VQ4J 1N8RK 1QVFI 1KC8K 1Q81K 2ZJQG 3G71J 3CCRJ 1K8AK 1KD1K 3CPWI 1S72J 3CCEJ 1NJIK 1VQMJ 1YIJJ 3CCVJ 3CC4J 4IOCG 1VQOJ 3CC7J 3CCJJ 1VQPJ 1KQSI 1VQKJ 3DLLG 3OW2I 2ZJRG 1VQ7J 3CCLJ 4IO9G 3CCQJ 3CCSJ 2OTJJ 1J3AA 1VQLJ 1VQ8J 1VQ9J 1JJ2I 2QEXJ 4V19N 1VQ5J 1Q86K 1VQNJ 4IOAG 3PIPG 1VQ6J 3CMAJ 2OTLJ 2ZJPG 2QA4J 1YITJ 3CMEJ 1YHQJ 3CC2J 3CF5G 3CCMJ 1M90K 1K9MK 3G6EJ 3I55J 3PIOG 3J7YK 1YI2J 1K73K 1Q82K 1M1KK 1YJWJ 1YJ9J 1QVGI 1Q7YK 3CXCI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W2B I;  3CD6 J;  3I56 J;  3CCU J;  3G4S J;  1YJN J;  1VQ4 J;  1N8R K;  1QVF I;  1KC8 K;  1Q81 K;  2ZJQ G;  3G71 J;  3CCR J;  1K8A K;  1KD1 K;  3CPW I;  1S72 J;  3CCE J;  1NJI K;  1VQM J;  1YIJ J;  3CCV J;  3CC4 J;  4IOC G;  1VQO J;  3CC7 J;  3CCJ J;  1VQP J;  1KQS I;  1VQK J;  3DLL G;  3OW2 I;  2ZJR G;  1VQ7 J;  3CCL J;  4IO9 G;  3CCQ J;  3CCS J;  2OTJ J;  1J3A A;  1VQL J;  1VQ8 J;  1VQ9 J;  1JJ2 I;  2QEX J;  4V19 N;  1VQ5 J;  1Q86 K;  1VQN J;  4IOA G;  3PIP G;  1VQ6 J;  3CMA J;  2OTL J;  2ZJP G;  2QA4 J;  1YIT J;  3CME J;  1YHQ J;  3CC2 J;  3CF5 G;  3CCM J;  1M90 K;  1K9M K;  3G6E J;  3I55 J;  3PIO G;  3J7Y K;  1YI2 J;  1K73 K;  1Q82 K;  1M1K K;  1YJW J;  1YJ9 J;  1QVG I;  1Q7Y K;  3CXC I; 
#chains in the Genus database with same CATH topology
 1W2B I;  3CD6 J;  3I56 J;  3CCU J;  3G4S J;  1YJN J;  1VQ4 J;  1N8R K;  1QVF I;  1KC8 K;  1Q81 K;  2ZJQ G;  3G71 J;  3CCR J;  1K8A K;  1KD1 K;  3CPW I;  1S72 J;  3CCE J;  1NJI K;  1VQM J;  1YIJ J;  3CCV J;  3CC4 J;  4IOC G;  1VQO J;  3CC7 J;  3CCJ J;  1VQP J;  1KQS I;  1VQK J;  3DLL G;  3OW2 I;  2ZJR G;  1VQ7 J;  3CCL J;  4IO9 G;  3CCQ J;  3CCS J;  2OTJ J;  1J3A A;  1VQL J;  1VQ8 J;  1VQ9 J;  1JJ2 I;  2QEX J;  4V19 N;  1VQ5 J;  1Q86 K;  1VQN J;  4IOA G;  3PIP G;  1VQ6 J;  3CMA J;  2OTL J;  2ZJP G;  2QA4 J;  1YIT J;  3CME J;  1YHQ J;  3CC2 J;  3CF5 G;  3CCM J;  1M90 K;  1K9M K;  3G6E J;  3I55 J;  3PIO G;  3J7Y K;  1YI2 J;  1K73 K;  1Q82 K;  1M1K K;  1YJW J;  1YJ9 J;  1QVG I;  1Q7Y K;  3CXC I; 
#chains in the Genus database with same CATH homology
 1W2B I;  3CD6 J;  3I56 J;  3CCU J;  3G4S J;  1YJN J;  1VQ4 J;  1N8R K;  1QVF I;  1KC8 K;  1Q81 K;  2ZJQ G;  3G71 J;  3CCR J;  1K8A K;  1KD1 K;  3CPW I;  1S72 J;  3CCE J;  1NJI K;  1VQM J;  1YIJ J;  3CCV J;  3CC4 J;  4IOC G;  1VQO J;  3CC7 J;  3CCJ J;  1VQP J;  1KQS I;  1VQK J;  3DLL G;  3OW2 I;  2ZJR G;  1VQ7 J;  3CCL J;  4IO9 G;  3CCQ J;  3CCS J;  2OTJ J;  1J3A A;  1VQL J;  1VQ8 J;  1VQ9 J;  1JJ2 I;  2QEX J;  4V19 N;  1VQ5 J;  1Q86 K;  1VQN J;  4IOA G;  3PIP G;  1VQ6 J;  3CMA J;  2OTL J;  2ZJP G;  2QA4 J;  1YIT J;  3CME J;  1YHQ J;  3CC2 J;  3CF5 G;  3CCM J;  1M90 K;  1K9M K;  3G6E J;  3I55 J;  3PIO G;  3J7Y K;  1YI2 J;  1K73 K;  1Q82 K;  1M1K K;  1YJW J;  1YJ9 J;  1QVG I;  1Q7Y K;  3CXC I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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