4IO9G

Crystal structure of compound 4d bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
142
structure length
142
Chain Sequence
KTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
total genus 26
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 4io9G00
1N8RK 3J7YK 2ZJPG 3CMAJ 3CCEJ 1K8AK 2ZJRG 1VQNJ 3CCLJ 3CD6J 1M1KK 1YITJ 3CF5G 1YJWJ 1YJ9J 1Q86K 1VQ6J 3DLLG 3CCQJ 1Q7YK 2QA4J 1K9MK 1Q82K 3CCSJ 1VQLJ 3CCJJ 3CCUJ 1VQ5J 3CCMJ 1VQMJ 3PIOG 1KQSI 1W2BI 1Q81K 3CC7J 1VQOJ 1YJNJ 2OTJJ 1YIJJ 3G4SJ 3CC4J 1J3AA 2ZJQG 3G71J 4IOCG 1NJIK 1VQ4J 2OTLJ 3CC2J 1VQ7J 4V19N 1VQPJ 4IO9G 1KC8K 1VQ9J 1K73K 1KD1K 3CCRJ 1YI2J 1S72J 1YHQJ 4IOAG 1M90K 1QVGI 2QEXJ 1VQKJ 3PIPG 3CPWI 3I55J 1JJ2I 3CMEJ 3OW2I 3G6EJ 3CCVJ 3CXCI 1QVFI 1VQ8J 3I56J
chains in the Genus database with same CATH superfamily
1N8RK 3J7YK 2ZJPG 3CMAJ 3CCEJ 1K8AK 2ZJRG 1VQNJ 3CCLJ 3CD6J 1M1KK 1YITJ 3CF5G 1YJWJ 1YJ9J 1Q86K 1VQ6J 3DLLG 3CCQJ 1Q7YK 2QA4J 1K9MK 1Q82K 3CCSJ 1VQLJ 3CCJJ 3CCUJ 1VQ5J 3CCMJ 1VQMJ 3PIOG 1KQSI 1W2BI 1Q81K 3CC7J 1VQOJ 1YJNJ 2OTJJ 1YIJJ 3G4SJ 3CC4J 1J3AA 2ZJQG 3G71J 4IOCG 1NJIK 1VQ4J 2OTLJ 3CC2J 1VQ7J 4V19N 1VQPJ 4IO9G 1KC8K 1VQ9J 1K73K 1KD1K 3CCRJ 1YI2J 1S72J 1YHQJ 4IOAG 1M90K 1QVGI 2QEXJ 1VQKJ 3PIPG 3CPWI 3I55J 1JJ2I 3CMEJ 3OW2I 3G6EJ 3CCVJ 3CXCI 1QVFI 1VQ8J 3I56J
chains in the Genus database with same CATH topology
1N8RK 3J7YK 2ZJPG 3CMAJ 3CCEJ 1K8AK 2ZJRG 1VQNJ 3CCLJ 3CD6J 1M1KK 1YITJ 3CF5G 1YJWJ 1YJ9J 1Q86K 1VQ6J 3DLLG 3CCQJ 1Q7YK 2QA4J 1K9MK 1Q82K 3CCSJ 1VQLJ 3CCJJ 3CCUJ 1VQ5J 3CCMJ 1VQMJ 3PIOG 1KQSI 1W2BI 1Q81K 3CC7J 1VQOJ 1YJNJ 2OTJJ 1YIJJ 3G4SJ 3CC4J 1J3AA 2ZJQG 3G71J 4IOCG 1NJIK 1VQ4J 2OTLJ 3CC2J 1VQ7J 4V19N 1VQPJ 4IO9G 1KC8K 1VQ9J 1K73K 1KD1K 3CCRJ 1YI2J 1S72J 1YHQJ 4IOAG 1M90K 1QVGI 2QEXJ 1VQKJ 3PIPG 3CPWI 3I55J 1JJ2I 3CMEJ 3OW2I 3G6EJ 3CCVJ 3CXCI 1QVFI 1VQ8J 3I56J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N8R K;  3J7Y K;  2ZJP G;  3CMA J;  3CCE J;  1K8A K;  2ZJR G;  1VQN J;  3CCL J;  3CD6 J;  1M1K K;  1YIT J;  3CF5 G;  1YJW J;  1YJ9 J;  1Q86 K;  1VQ6 J;  3DLL G;  3CCQ J;  1Q7Y K;  2QA4 J;  1K9M K;  1Q82 K;  3CCS J;  1VQL J;  3CCJ J;  3CCU J;  1VQ5 J;  3CCM J;  1VQM J;  3PIO G;  1KQS I;  1W2B I;  1Q81 K;  3CC7 J;  1VQO J;  1YJN J;  2OTJ J;  1YIJ J;  3G4S J;  3CC4 J;  1J3A A;  2ZJQ G;  3G71 J;  4IOC G;  1NJI K;  1VQ4 J;  2OTL J;  3CC2 J;  1VQ7 J;  4V19 N;  1VQP J;  4IO9 G;  1KC8 K;  1VQ9 J;  1K73 K;  1KD1 K;  3CCR J;  1YI2 J;  1S72 J;  1YHQ J;  4IOA G;  1M90 K;  1QVG I;  2QEX J;  1VQK J;  3PIP G;  3CPW I;  3I55 J;  1JJ2 I;  3CME J;  3OW2 I;  3G6E J;  3CCV J;  3CXC I;  1QVF I;  1VQ8 J;  3I56 J; 
#chains in the Genus database with same CATH topology
 1N8R K;  3J7Y K;  2ZJP G;  3CMA J;  3CCE J;  1K8A K;  2ZJR G;  1VQN J;  3CCL J;  3CD6 J;  1M1K K;  1YIT J;  3CF5 G;  1YJW J;  1YJ9 J;  1Q86 K;  1VQ6 J;  3DLL G;  3CCQ J;  1Q7Y K;  2QA4 J;  1K9M K;  1Q82 K;  3CCS J;  1VQL J;  3CCJ J;  3CCU J;  1VQ5 J;  3CCM J;  1VQM J;  3PIO G;  1KQS I;  1W2B I;  1Q81 K;  3CC7 J;  1VQO J;  1YJN J;  2OTJ J;  1YIJ J;  3G4S J;  3CC4 J;  1J3A A;  2ZJQ G;  3G71 J;  4IOC G;  1NJI K;  1VQ4 J;  2OTL J;  3CC2 J;  1VQ7 J;  4V19 N;  1VQP J;  4IO9 G;  1KC8 K;  1VQ9 J;  1K73 K;  1KD1 K;  3CCR J;  1YI2 J;  1S72 J;  1YHQ J;  4IOA G;  1M90 K;  1QVG I;  2QEX J;  1VQK J;  3PIP G;  3CPW I;  3I55 J;  1JJ2 I;  3CME J;  3OW2 I;  3G6E J;  3CCV J;  3CXC I;  1QVF I;  1VQ8 J;  3I56 J; 
#chains in the Genus database with same CATH homology
 1N8R K;  3J7Y K;  2ZJP G;  3CMA J;  3CCE J;  1K8A K;  2ZJR G;  1VQN J;  3CCL J;  3CD6 J;  1M1K K;  1YIT J;  3CF5 G;  1YJW J;  1YJ9 J;  1Q86 K;  1VQ6 J;  3DLL G;  3CCQ J;  1Q7Y K;  2QA4 J;  1K9M K;  1Q82 K;  3CCS J;  1VQL J;  3CCJ J;  3CCU J;  1VQ5 J;  3CCM J;  1VQM J;  3PIO G;  1KQS I;  1W2B I;  1Q81 K;  3CC7 J;  1VQO J;  1YJN J;  2OTJ J;  1YIJ J;  3G4S J;  3CC4 J;  1J3A A;  2ZJQ G;  3G71 J;  4IOC G;  1NJI K;  1VQ4 J;  2OTL J;  3CC2 J;  1VQ7 J;  4V19 N;  1VQP J;  4IO9 G;  1KC8 K;  1VQ9 J;  1K73 K;  1KD1 K;  3CCR J;  1YI2 J;  1S72 J;  1YHQ J;  4IOA G;  1M90 K;  1QVG I;  2QEX J;  1VQK J;  3PIP G;  3CPW I;  3I55 J;  1JJ2 I;  3CME J;  3OW2 I;  3G6E J;  3CCV J;  3CXC I;  1QVF I;  1VQ8 J;  3I56 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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