4IO9P

Crystal structure of compound 4d bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
127
structure length
127
Chain Sequence
FRNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 31
structure length 127
sequence length 127
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 4io9P00
3I56R 4WFNP 1BXEA 2OTJR 1Q82S 4IOCP 4V19W 1YI2R 1K73S 5GAET 3CC7R 3CD6R 3CCJR 3CCVR 1YHQR 1Q86S 3CCRR 1Q81S 4WFAP 3CF5P 5GAHT 3CMER 3G6ER 1M1KS 5GADT 2ZJRP 3CCUR 3PIOP 5H1SU 1VQ5R 3CCMR 5DM7P 1VQ6R 4WF9P 1VQPR 3CXCQ 4UY8S 1K8AS 1VQ4R 5DM6P 1VQKR 1YIJR 3CC2R 1VQ8R 1VQ7R 2ZJPP 1KD1S 1YJWR 3CCSR 2QA4R 1Q7YS 5GAGT 1N8RS 1I4JA 1VQ9R 3G71R 1KQSQ 1K9MS 3G4SR 3J7ZS 1QVFQ 1VQNR 3I55R 1YITR 1W2BQ 1KC8S 4U67P 1NJIS 3PIPP 1QVGQ 3CCQR 5JVGP 5JVHP 3CPWQ 1M90S 1VQLR 5HL7P 3CC4R 5MLCU 4IOAP 2ZJQP 1JJ2Q 3CMAR 4IO9P 3J7YT 3OW2Q 3CCER 1YJ9R 1VQMR 2OTLR 1S72R 1VQOR 4WCEP 3DLLP 1YJNR 3CCLR 2QEXR 4WFBP
chains in the Genus database with same CATH superfamily
3I56R 4WFNP 1BXEA 2OTJR 1Q82S 2JCAA 2BDDA 4IOCP 4V19W 2WDYA 3HYKA 5CXDA 1YI2R 1K73S 2WDSA 5GAET 3CC7R 3CD6R 1F7TA 1FTFA 3CCJR 3CCVR 1YHQR 1Q86S 3CCRR 3QMNA 1Q81S 4WFAP 3CF5P 4DXEA 5GAHT 4HC6A 3CMER 2JBZA 3NE9A 3G6ER 1M1KS 5GADT 2ZJRP 3CCUR 2D0PA 3PIOP 5H1SU 2WDOA 1VQ5R 3NE1A 4JM7A 3CCMR 5DM7P 1VQ6R 4WF9P 1VQPR 2WATA 3CXCQ 4UY8S 1K8AS 1VQ4R 5DM6P 1VQKR 1QR0A 1YIJR 3CC2R 1VQ8R 5CMOA 1VQ7R 2ZJPP 1KD1S 1YJWR 3CCSR 2QA4R 1Q7YS 5GAGT 1N8RS 1FTEA 1I4JA 1VQ9R 3HQJA 2WASB 3G71R 1KQSQ 1F80A 1F7LA 3NFDA 1K9MS 3G4SR 3J7ZS 1QVFQ 1VQNR 2C43A 2QG8A 3NE3B 4MRTA 3I55R 3H7QA 2D0OA 1YITR 1W2BQ 1KC8S 4U67P 1NJIS 3PIPP 2WASA 1QVGQ 3CCQR 5JVGP 5JVHP 3CPWQ 1M90S 1NBWA 1VQLR 5HL7P 3CC4R 5MLCU 2CG5A 4IOAP 2ZJQP 1JJ2Q 3CMAR 4IO9P 3J7YT 3OW2Q 3CCER 1YJ9R 2BYDA 1VQMR 2OTLR 1S72R 1VQOR 4WCEP 3DLLP 1YJNR 3GWMA 3CCLR 1FTHA 2QEXR 4WFBP
chains in the Genus database with same CATH topology
3I56R 4WFNP 1BXEA 2OTJR 1Q82S 4IOCP 4V19W 1YI2R 1K73S 5GAET 3CC7R 3CD6R 3CCJR 3CCVR 1YHQR 1Q86S 3CCRR 1Q81S 4WFAP 3CF5P 5GAHT 3CMER 3G6ER 1M1KS 5GADT 2ZJRP 3CCUR 3PIOP 5H1SU 1VQ5R 3CCMR 5DM7P 1VQ6R 4WF9P 1VQPR 3CXCQ 4UY8S 1K8AS 1VQ4R 5DM6P 1VQKR 1YIJR 3CC2R 1VQ8R 1VQ7R 2ZJPP 1KD1S 1YJWR 3CCSR 2QA4R 1Q7YS 5GAGT 1N8RS 1I4JA 1VQ9R 3G71R 1KQSQ 1K9MS 3G4SR 3J7ZS 1QVFQ 1VQNR 3I55R 1YITR 1W2BQ 1KC8S 4U67P 1NJIS 3PIPP 1QVGQ 3CCQR 5JVGP 5JVHP 3CPWQ 1M90S 1VQLR 5HL7P 3CC4R 5MLCU 4IOAP 2ZJQP 1JJ2Q 3CMAR 4IO9P 3J7YT 3OW2Q 3CCER 1YJ9R 1VQMR 2OTLR 1S72R 1VQOR 4WCEP 3DLLP 1YJNR 3CCLR 2QEXR 4WFBP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I56 R;  4WFN P;  1BXE A;  2OTJ R;  1Q82 S;  4IOC P;  4V19 W;  1YI2 R;  1K73 S;  5GAE T;  3CC7 R;  3CD6 R;  3CCJ R;  3CCV R;  1YHQ R;  1Q86 S;  3CCR R;  1Q81 S;  4WFA P;  3CF5 P;  5GAH T;  3CME R;  3G6E R;  1M1K S;  5GAD T;  2ZJR P;  3CCU R;  3PIO P;  5H1S U;  1VQ5 R;  3CCM R;  5DM7 P;  1VQ6 R;  4WF9 P;  1VQP R;  3CXC Q;  4UY8 S;  1K8A S;  1VQ4 R;  5DM6 P;  1VQK R;  1YIJ R;  3CC2 R;  1VQ8 R;  1VQ7 R;  2ZJP P;  1KD1 S;  1YJW R;  3CCS R;  2QA4 R;  1Q7Y S;  5GAG T;  1N8R S;  1I4J A;  1VQ9 R;  3G71 R;  1KQS Q;  1K9M S;  3G4S R;  3J7Z S;  1QVF Q;  1VQN R;  3I55 R;  1YIT R;  1W2B Q;  1KC8 S;  4U67 P;  1NJI S;  3PIP P;  1QVG Q;  3CCQ R;  5JVG P;  5JVH P;  3CPW Q;  1M90 S;  1VQL R;  5HL7 P;  3CC4 R;  5MLC U;  4IOA P;  2ZJQ P;  1JJ2 Q;  3CMA R;  4IO9 P;  3J7Y T;  3OW2 Q;  3CCE R;  1YJ9 R;  1VQM R;  2OTL R;  1S72 R;  1VQO R;  4WCE P;  3DLL P;  1YJN R;  3CCL R;  2QEX R;  4WFB P; 
#chains in the Genus database with same CATH topology
 3I56 R;  4WFN P;  1BXE A;  2OTJ R;  1Q82 S;  2JCA A;  2BDD A;  4IOC P;  4V19 W;  2WDY A;  3HYK A;  5CXD A;  1YI2 R;  1K73 S;  2WDS A;  5GAE T;  3CC7 R;  3CD6 R;  1F7T A;  1FTF A;  3CCJ R;  3CCV R;  1YHQ R;  1Q86 S;  3CCR R;  3QMN A;  1Q81 S;  4WFA P;  3CF5 P;  4DXE A;  5GAH T;  4HC6 A;  3CME R;  2JBZ A;  3NE9 A;  3G6E R;  1M1K S;  5GAD T;  2ZJR P;  3CCU R;  2D0P A;  3PIO P;  5H1S U;  2WDO A;  1VQ5 R;  3NE1 A;  4JM7 A;  3CCM R;  5DM7 P;  1VQ6 R;  4WF9 P;  1VQP R;  2WAT A;  3CXC Q;  4UY8 S;  1K8A S;  1VQ4 R;  5DM6 P;  1VQK R;  1QR0 A;  1YIJ R;  3CC2 R;  1VQ8 R;  5CMO A;  1VQ7 R;  2ZJP P;  1KD1 S;  1YJW R;  3CCS R;  2QA4 R;  1Q7Y S;  5GAG T;  1N8R S;  1FTE A;  1I4J A;  1VQ9 R;  3HQJ A;  2WAS B;  3G71 R;  1KQS Q;  1F80 A;  1F7L A;  3NFD A;  1K9M S;  3G4S R;  3J7Z S;  1QVF Q;  1VQN R;  2C43 A;  2QG8 A;  3NE3 B;  4MRT A;  3I55 R;  3H7Q A;  2D0O A;  1YIT R;  1W2B Q;  1KC8 S;  4U67 P;  1NJI S;  3PIP P;  2WAS A;  1QVG Q;  3CCQ R;  5JVG P;  5JVH P;  3CPW Q;  1M90 S;  1NBW A;  1VQL R;  5HL7 P;  3CC4 R;  5MLC U;  2CG5 A;  4IOA P;  2ZJQ P;  1JJ2 Q;  3CMA R;  4IO9 P;  3J7Y T;  3OW2 Q;  3CCE R;  1YJ9 R;  2BYD A;  1VQM R;  2OTL R;  1S72 R;  1VQO R;  4WCE P;  3DLL P;  1YJN R;  3GWM A;  3CCL R;  1FTH A;  2QEX R;  4WFB P; 
#chains in the Genus database with same CATH homology
 3I56 R;  4WFN P;  1BXE A;  2OTJ R;  1Q82 S;  4IOC P;  4V19 W;  1YI2 R;  1K73 S;  5GAE T;  3CC7 R;  3CD6 R;  3CCJ R;  3CCV R;  1YHQ R;  1Q86 S;  3CCR R;  1Q81 S;  4WFA P;  3CF5 P;  5GAH T;  3CME R;  3G6E R;  1M1K S;  5GAD T;  2ZJR P;  3CCU R;  3PIO P;  5H1S U;  1VQ5 R;  3CCM R;  5DM7 P;  1VQ6 R;  4WF9 P;  1VQP R;  3CXC Q;  4UY8 S;  1K8A S;  1VQ4 R;  5DM6 P;  1VQK R;  1YIJ R;  3CC2 R;  1VQ8 R;  1VQ7 R;  2ZJP P;  1KD1 S;  1YJW R;  3CCS R;  2QA4 R;  1Q7Y S;  5GAG T;  1N8R S;  1I4J A;  1VQ9 R;  3G71 R;  1KQS Q;  1K9M S;  3G4S R;  3J7Z S;  1QVF Q;  1VQN R;  3I55 R;  1YIT R;  1W2B Q;  1KC8 S;  4U67 P;  1NJI S;  3PIP P;  1QVG Q;  3CCQ R;  5JVG P;  5JVH P;  3CPW Q;  1M90 S;  1VQL R;  5HL7 P;  3CC4 R;  5MLC U;  4IOA P;  2ZJQ P;  1JJ2 Q;  3CMA R;  4IO9 P;  3J7Y T;  3OW2 Q;  3CCE R;  1YJ9 R;  1VQM R;  2OTL R;  1S72 R;  1VQO R;  4WCE P;  3DLL P;  1YJN R;  3CCL R;  2QEX R;  4WFB P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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