4IOAG

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
142
structure length
142
Chain Sequence
KTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
total genus 27
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 4ioaG00
3PIOG 2ZJQG 1Q81K 1VQ5J 1NJIK 3I55J 1Q7YK 3CC4J 1YJ9J 3OW2I 1YIJJ 1VQLJ 3CCQJ 1Q82K 2OTLJ 1W2BI 3CCEJ 1K73K 1KC8K 1VQ4J 1YITJ 2ZJPG 4V19N 1N8RK 3CMEJ 1K9MK 1KD1K 3G71J 2OTJJ 1S72J 1Q86K 1M1KK 3CCLJ 3CF5G 1VQOJ 4IO9G 1VQNJ 3CMAJ 3CC2J 2QA4J 1YJNJ 3CD6J 1VQ6J 3CCUJ 1VQ7J 1KQSI 3CXCI 2ZJRG 1J3AA 4IOAG 1VQMJ 3CC7J 1VQPJ 1YJWJ 1QVFI 1VQ8J 3G4SJ 4IOCG 1JJ2I 3CPWI 3I56J 3PIPG 3J7YK 3G6EJ 2QEXJ 3CCRJ 3CCSJ 3CCVJ 1YHQJ 3CCJJ 1YI2J 1K8AK 1M90K 1VQ9J 1VQKJ 1QVGI 3DLLG 3CCMJ
chains in the Genus database with same CATH superfamily
3PIOG 2ZJQG 1Q81K 1VQ5J 1NJIK 3I55J 1Q7YK 3CC4J 1YJ9J 3OW2I 1YIJJ 1VQLJ 3CCQJ 1Q82K 2OTLJ 1W2BI 3CCEJ 1K73K 1KC8K 1VQ4J 1YITJ 2ZJPG 4V19N 1N8RK 3CMEJ 1K9MK 1KD1K 3G71J 2OTJJ 1S72J 1Q86K 1M1KK 3CCLJ 3CF5G 1VQOJ 4IO9G 1VQNJ 3CMAJ 3CC2J 2QA4J 1YJNJ 3CD6J 1VQ6J 3CCUJ 1VQ7J 1KQSI 3CXCI 2ZJRG 1J3AA 4IOAG 1VQMJ 3CC7J 1VQPJ 1YJWJ 1QVFI 1VQ8J 3G4SJ 4IOCG 1JJ2I 3CPWI 3I56J 3PIPG 3J7YK 3G6EJ 2QEXJ 3CCRJ 3CCSJ 3CCVJ 1YHQJ 3CCJJ 1YI2J 1K8AK 1M90K 1VQ9J 1VQKJ 1QVGI 3DLLG 3CCMJ
chains in the Genus database with same CATH topology
3PIOG 2ZJQG 1Q81K 1VQ5J 1NJIK 3I55J 1Q7YK 3CC4J 1YJ9J 3OW2I 1YIJJ 1VQLJ 3CCQJ 1Q82K 2OTLJ 1W2BI 3CCEJ 1K73K 1KC8K 1VQ4J 1YITJ 2ZJPG 4V19N 1N8RK 3CMEJ 1K9MK 1KD1K 3G71J 2OTJJ 1S72J 1Q86K 1M1KK 3CCLJ 3CF5G 1VQOJ 4IO9G 1VQNJ 3CMAJ 3CC2J 2QA4J 1YJNJ 3CD6J 1VQ6J 3CCUJ 1VQ7J 1KQSI 3CXCI 2ZJRG 1J3AA 4IOAG 1VQMJ 3CC7J 1VQPJ 1YJWJ 1QVFI 1VQ8J 3G4SJ 4IOCG 1JJ2I 3CPWI 3I56J 3PIPG 3J7YK 3G6EJ 2QEXJ 3CCRJ 3CCSJ 3CCVJ 1YHQJ 3CCJJ 1YI2J 1K8AK 1M90K 1VQ9J 1VQKJ 1QVGI 3DLLG 3CCMJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PIO G;  2ZJQ G;  1Q81 K;  1VQ5 J;  1NJI K;  3I55 J;  1Q7Y K;  3CC4 J;  1YJ9 J;  3OW2 I;  1YIJ J;  1VQL J;  3CCQ J;  1Q82 K;  2OTL J;  1W2B I;  3CCE J;  1K73 K;  1KC8 K;  1VQ4 J;  1YIT J;  2ZJP G;  4V19 N;  1N8R K;  3CME J;  1K9M K;  1KD1 K;  3G71 J;  2OTJ J;  1S72 J;  1Q86 K;  1M1K K;  3CCL J;  3CF5 G;  1VQO J;  4IO9 G;  1VQN J;  3CMA J;  3CC2 J;  2QA4 J;  1YJN J;  3CD6 J;  1VQ6 J;  3CCU J;  1VQ7 J;  1KQS I;  3CXC I;  2ZJR G;  1J3A A;  4IOA G;  1VQM J;  3CC7 J;  1VQP J;  1YJW J;  1QVF I;  1VQ8 J;  3G4S J;  4IOC G;  1JJ2 I;  3CPW I;  3I56 J;  3PIP G;  3J7Y K;  3G6E J;  2QEX J;  3CCR J;  3CCS J;  3CCV J;  1YHQ J;  3CCJ J;  1YI2 J;  1K8A K;  1M90 K;  1VQ9 J;  1VQK J;  1QVG I;  3DLL G;  3CCM J; 
#chains in the Genus database with same CATH topology
 3PIO G;  2ZJQ G;  1Q81 K;  1VQ5 J;  1NJI K;  3I55 J;  1Q7Y K;  3CC4 J;  1YJ9 J;  3OW2 I;  1YIJ J;  1VQL J;  3CCQ J;  1Q82 K;  2OTL J;  1W2B I;  3CCE J;  1K73 K;  1KC8 K;  1VQ4 J;  1YIT J;  2ZJP G;  4V19 N;  1N8R K;  3CME J;  1K9M K;  1KD1 K;  3G71 J;  2OTJ J;  1S72 J;  1Q86 K;  1M1K K;  3CCL J;  3CF5 G;  1VQO J;  4IO9 G;  1VQN J;  3CMA J;  3CC2 J;  2QA4 J;  1YJN J;  3CD6 J;  1VQ6 J;  3CCU J;  1VQ7 J;  1KQS I;  3CXC I;  2ZJR G;  1J3A A;  4IOA G;  1VQM J;  3CC7 J;  1VQP J;  1YJW J;  1QVF I;  1VQ8 J;  3G4S J;  4IOC G;  1JJ2 I;  3CPW I;  3I56 J;  3PIP G;  3J7Y K;  3G6E J;  2QEX J;  3CCR J;  3CCS J;  3CCV J;  1YHQ J;  3CCJ J;  1YI2 J;  1K8A K;  1M90 K;  1VQ9 J;  1VQK J;  1QVG I;  3DLL G;  3CCM J; 
#chains in the Genus database with same CATH homology
 3PIO G;  2ZJQ G;  1Q81 K;  1VQ5 J;  1NJI K;  3I55 J;  1Q7Y K;  3CC4 J;  1YJ9 J;  3OW2 I;  1YIJ J;  1VQL J;  3CCQ J;  1Q82 K;  2OTL J;  1W2B I;  3CCE J;  1K73 K;  1KC8 K;  1VQ4 J;  1YIT J;  2ZJP G;  4V19 N;  1N8R K;  3CME J;  1K9M K;  1KD1 K;  3G71 J;  2OTJ J;  1S72 J;  1Q86 K;  1M1K K;  3CCL J;  3CF5 G;  1VQO J;  4IO9 G;  1VQN J;  3CMA J;  3CC2 J;  2QA4 J;  1YJN J;  3CD6 J;  1VQ6 J;  3CCU J;  1VQ7 J;  1KQS I;  3CXC I;  2ZJR G;  1J3A A;  4IOA G;  1VQM J;  3CC7 J;  1VQP J;  1YJW J;  1QVF I;  1VQ8 J;  3G4S J;  4IOC G;  1JJ2 I;  3CPW I;  3I56 J;  3PIP G;  3J7Y K;  3G6E J;  2QEX J;  3CCR J;  3CCS J;  3CCV J;  1YHQ J;  3CCJ J;  1YI2 J;  1K8A K;  1M90 K;  1VQ9 J;  1VQK J;  1QVG I;  3DLL G;  3CCM J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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