4IOAJ

Crystal structure of compound 4e bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 20
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4ioaJ01
1VQNH 5H1SO 3CC7H 1W2BH 1Q86J 3CXCH 3OW2H 2QA4H 3CCEH 1Q82J 1QVGH 2ZJQJ 4WCEJ 1YJWH 3I56H 1VQ8H 1VQ5H 4UY8M 1KQSH 3CC4H 1VQ4H 1M1KJ 1K9MJ 1VQLH 3PIOJ 5GAEN 3DLLJ 3CC2H 4IOCJ 1YITH 1VQOH 3CMAH 2ZJPJ 3I55H 4IOAJ 3G71H 5GAGN 3G4SH 4IO9J 3CCUH 5GADN 5HL7J 3CCMH 2QEXH 1YJNH 5AN9F 4WFBJ 4U67J 4WFAJ 2OTJH 1KC8J 1YI2H 1Y69K 1QVFH 3CCJH 5DM6J 3CCVH 1WKIA 5JVHJ 2OTLH 1VQMH 3G6EH 1Q81J 1K8AJ 1M90J 3CD6H 1N8RJ 3CF5J 4WFNJ 1VQ7H 3PIPJ 2ZJRJ 1K73J 4WF9J 5MLCO 5DM7J 3CCRH 3CCQH 3CPWH 5JVGJ 1VQ6H 1VQKH 1JJ2H 1VQ9H 2PA2A 5GAHN 1Q7YJ 3CMEH 1YIJH 1VQPH 1NJIJ 1S72H 1YJ9H 3CCLH 3CCSH 1KD1J 1YHQH 3J7ZM
chains in the Genus database with same CATH superfamily
2I1OA 5EY3A 5H1SO 1VQNH 3PAJA 5EP8A 3CC7H 3C2FA 1DGJA 3NVYC 5AYXA 1W2BH 1Q86J 3CXCH 4GA5A 3WNZA 3OW2H 3NVZC 3B9JC 4C7ZA 1N5XA 2QA4H 3H5QA 3CCEH 1NVIE 2WK5A 5AYZA 1Q82J 1QVGH 2ZJQJ 1JRPB 4US9A 4WCEJ 1YJWH 3I56H 1VQ8H 1VQ5H 4UY8M 4XR5A 1KQSH 3CC4H 1VQ4H 1FMAE 1QPNA 1M1KJ 1UOUA 4USAA 1X1OA 2JBMA 1K9MJ 2I14A 2B7QA 1SIJA 1SB3A 3PIOJ 1VQLH 5GAEN 1AZYA 2WP4A 3NVWC 4EADA 1ZXIB 2QIEA 1V97A 2W55B 4ZOHA 3CC2H 4IOCJ 3DLLJ 4I9AA 1YITH 1VQOH 3CMAH 5MPOC 1N61B 1VDVA 1WYGA 2ZJPJ 3I55H 1QPOA 3G71H 1BRWA 3C2RA 5GAGN 1FFVB 4IOAJ 3G4SH 4IO9J 4LHMA 3CCUH 3AMZA 3L4PA 3WO1A 2WK6A 5GADN 2DSJA 1N63B 5HL7J 3NVVC 3AM9A 3CCMH 2QEXH 1RM6A 3C2OA 4KWVA 1YJNH 2B7NA 4GA6A 4AP8A 5AN9F 3BIIE 1QAPA 4WFBJ 3L0GA 4U67J 3AN1A 1FIQC 4WFAJ 3TQVA 5HUPA 2E3TA 2OTJH 4GA4A 4YYYA 3WO0A 1KC8J 4X46A 1N62B 3C2EA 1OTPA 1YTKA 1YI2H 1Y69K 1QVFH 3CCJH 3RPFA 1JROB 5DM6J 3CCVH 2W54B 1WKIA 1N60B 1N5WB 2J0FA 5HUOA 2W3SB 5HULA 1FO4A 5JVHJ 2OTLH 1VQMH 3G6EH 4C80A 1Q81J 1K8AJ 4US8A 2TPTA 3ETRC 4YEKA 1M90J 3CD6H 3EUB4 2B7PA 1N8RJ 3CF5J 4WFNJ 1VQ7H 3NRZC 3PIPJ 2ZJRJ 1VLBA 1K73J 1YTEA 3GNNA 4EAFA 4WF9J 2W3RB 1FM0E 5MLCO 1NVJA 1FFUB 5DM7J 3CCRH 3VMMA 3FC4A 3CCQH 3CPWH 5JVGJ 1VQ6H 2OMDA 1VQKH 1JJ2H 5AYYA 1VQ9H 3NS1C 2PA2A 5GAHN 1Q7YJ 4KWWA 3CMEH 1YIJH 1VQPH 1YTDA 1NJIJ 2Q5WE 1S72H 3FAHA 4C7YA 1YJ9H 1QPRA 1QPQA 3CCLH 3CCSH 1KD1J 3C2VA 3SR6C 1YHQH 3J7ZM 1O4UA
chains in the Genus database with same CATH topology
1VQNH 5H1SO 3CC7H 1W2BH 1Q86J 3CXCH 3OW2H 2QA4H 3CCEH 1Q82J 1QVGH 2ZJQJ 4WCEJ 1YJWH 3I56H 1VQ8H 1VQ5H 4UY8M 1KQSH 3CC4H 1VQ4H 1M1KJ 1K9MJ 1VQLH 3PIOJ 5GAEN 3DLLJ 3CC2H 4IOCJ 1YITH 1VQOH 3CMAH 2ZJPJ 3I55H 4IOAJ 3G71H 5GAGN 3G4SH 4IO9J 3CCUH 5GADN 5HL7J 3CCMH 2QEXH 1YJNH 5AN9F 4WFBJ 4U67J 4WFAJ 2OTJH 1KC8J 1YI2H 1Y69K 1QVFH 3CCJH 5DM6J 3CCVH 1WKIA 5JVHJ 2OTLH 1VQMH 3G6EH 1Q81J 1K8AJ 1M90J 3CD6H 1N8RJ 3CF5J 4WFNJ 1VQ7H 3PIPJ 2ZJRJ 1K73J 4WF9J 5MLCO 5DM7J 3CCRH 3CCQH 3CPWH 5JVGJ 1VQ6H 1VQKH 1JJ2H 1VQ9H 2PA2A 5GAHN 1Q7YJ 3CMEH 1YIJH 1VQPH 1NJIJ 1S72H 1YJ9H 3CCLH 3CCSH 1KD1J 1YHQH 3J7ZM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQN H;  5H1S O;  3CC7 H;  1W2B H;  1Q86 J;  3CXC H;  3OW2 H;  2QA4 H;  3CCE H;  1Q82 J;  1QVG H;  2ZJQ J;  4WCE J;  1YJW H;  3I56 H;  1VQ8 H;  1VQ5 H;  4UY8 M;  1KQS H;  3CC4 H;  1VQ4 H;  1M1K J;  1K9M J;  1VQL H;  3PIO J;  5GAE N;  3DLL J;  3CC2 H;  4IOC J;  1YIT H;  1VQO H;  3CMA H;  2ZJP J;  3I55 H;  4IOA J;  3G71 H;  5GAG N;  3G4S H;  4IO9 J;  3CCU H;  5GAD N;  5HL7 J;  3CCM H;  2QEX H;  1YJN H;  5AN9 F;  4WFB J;  4U67 J;  4WFA J;  2OTJ H;  1KC8 J;  1YI2 H;  1Y69 K;  1QVF H;  3CCJ H;  5DM6 J;  3CCV H;  1WKI A;  5JVH J;  2OTL H;  1VQM H;  3G6E H;  1Q81 J;  1K8A J;  1M90 J;  3CD6 H;  1N8R J;  3CF5 J;  4WFN J;  1VQ7 H;  3PIP J;  2ZJR J;  1K73 J;  4WF9 J;  5MLC O;  5DM7 J;  3CCR H;  3CCQ H;  3CPW H;  5JVG J;  1VQ6 H;  1VQK H;  1JJ2 H;  1VQ9 H;  2PA2 A;  5GAH N;  1Q7Y J;  3CME H;  1YIJ H;  1VQP H;  1NJI J;  1S72 H;  1YJ9 H;  3CCL H;  3CCS H;  1KD1 J;  1YHQ H;  3J7Z M; 
#chains in the Genus database with same CATH topology
 2I1O A;  5EY3 A;  5H1S O;  1VQN H;  3PAJ A;  5EP8 A;  3CC7 H;  3C2F A;  1DGJ A;  3NVY C;  5AYX A;  1W2B H;  1Q86 J;  3CXC H;  4GA5 A;  3WNZ A;  3OW2 H;  3NVZ C;  3B9J C;  4C7Z A;  1N5X A;  2QA4 H;  3H5Q A;  3CCE H;  1NVI E;  2WK5 A;  5AYZ A;  1Q82 J;  1QVG H;  2ZJQ J;  1JRP B;  4US9 A;  4WCE J;  1YJW H;  3I56 H;  1VQ8 H;  1VQ5 H;  4UY8 M;  4XR5 A;  1KQS H;  3CC4 H;  1VQ4 H;  1FMA E;  1QPN A;  1M1K J;  1UOU A;  4USA A;  1X1O A;  2JBM A;  1K9M J;  2I14 A;  2B7Q A;  1SIJ A;  1SB3 A;  3PIO J;  1VQL H;  5GAE N;  1AZY A;  2WP4 A;  3NVW C;  4EAD A;  1ZXI B;  2QIE A;  1V97 A;  2W55 B;  4ZOH A;  3CC2 H;  4IOC J;  3DLL J;  4I9A A;  1YIT H;  1VQO H;  3CMA H;  5MPO C;  1N61 B;  1VDV A;  1WYG A;  2ZJP J;  3I55 H;  1QPO A;  3G71 H;  1BRW A;  3C2R A;  5GAG N;  1FFV B;  4IOA J;  3G4S H;  4IO9 J;  4LHM A;  3CCU H;  3AMZ A;  3L4P A;  3WO1 A;  2WK6 A;  5GAD N;  2DSJ A;  1N63 B;  5HL7 J;  3NVV C;  3AM9 A;  3CCM H;  2QEX H;  1RM6 A;  3C2O A;  4KWV A;  1YJN H;  2B7N A;  4GA6 A;  4AP8 A;  5AN9 F;  3BII E;  1QAP A;  4WFB J;  3L0G A;  4U67 J;  3AN1 A;  1FIQ C;  4WFA J;  3TQV A;  5HUP A;  2E3T A;  2OTJ H;  4GA4 A;  4YYY A;  3WO0 A;  1KC8 J;  4X46 A;  1N62 B;  3C2E A;  1OTP A;  1YTK A;  1YI2 H;  1Y69 K;  1QVF H;  3CCJ H;  3RPF A;  1JRO B;  5DM6 J;  3CCV H;  2W54 B;  1WKI A;  1N60 B;  1N5W B;  2J0F A;  5HUO A;  2W3S B;  5HUL A;  1FO4 A;  5JVH J;  2OTL H;  1VQM H;  3G6E H;  4C80 A;  1Q81 J;  1K8A J;  4US8 A;  2TPT A;  3ETR C;  4YEK A;  1M90 J;  3CD6 H;  3EUB 4;  2B7P A;  1N8R J;  3CF5 J;  4WFN J;  1VQ7 H;  3NRZ C;  3PIP J;  2ZJR J;  1VLB A;  1K73 J;  1YTE A;  3GNN A;  4EAF A;  4WF9 J;  2W3R B;  1FM0 E;  5MLC O;  1NVJ A;  1FFU B;  5DM7 J;  3CCR H;  3VMM A;  3FC4 A;  3CCQ H;  3CPW H;  5JVG J;  1VQ6 H;  2OMD A;  1VQK H;  1JJ2 H;  5AYY A;  1VQ9 H;  3NS1 C;  2PA2 A;  5GAH N;  1Q7Y J;  4KWW A;  3CME H;  1YIJ H;  1VQP H;  1YTD A;  1NJI J;  2Q5W E;  1S72 H;  3FAH A;  4C7Y A;  1YJ9 H;  1QPR A;  1QPQ A;  3CCL H;  3CCS H;  1KD1 J;  3C2V A;  3SR6 C;  1YHQ H;  3J7Z M;  1O4U A; 
#chains in the Genus database with same CATH homology
 1VQN H;  5H1S O;  3CC7 H;  1W2B H;  1Q86 J;  3CXC H;  3OW2 H;  2QA4 H;  3CCE H;  1Q82 J;  1QVG H;  2ZJQ J;  4WCE J;  1YJW H;  3I56 H;  1VQ8 H;  1VQ5 H;  4UY8 M;  1KQS H;  3CC4 H;  1VQ4 H;  1M1K J;  1K9M J;  1VQL H;  3PIO J;  5GAE N;  3DLL J;  3CC2 H;  4IOC J;  1YIT H;  1VQO H;  3CMA H;  2ZJP J;  3I55 H;  4IOA J;  3G71 H;  5GAG N;  3G4S H;  4IO9 J;  3CCU H;  5GAD N;  5HL7 J;  3CCM H;  2QEX H;  1YJN H;  5AN9 F;  4WFB J;  4U67 J;  4WFA J;  2OTJ H;  1KC8 J;  1YI2 H;  1Y69 K;  1QVF H;  3CCJ H;  5DM6 J;  3CCV H;  1WKI A;  5JVH J;  2OTL H;  1VQM H;  3G6E H;  1Q81 J;  1K8A J;  1M90 J;  3CD6 H;  1N8R J;  3CF5 J;  4WFN J;  1VQ7 H;  3PIP J;  2ZJR J;  1K73 J;  4WF9 J;  5MLC O;  5DM7 J;  3CCR H;  3CCQ H;  3CPW H;  5JVG J;  1VQ6 H;  1VQK H;  1JJ2 H;  1VQ9 H;  2PA2 A;  5GAH N;  1Q7Y J;  3CME H;  1YIJ H;  1VQP H;  1NJI J;  1S72 H;  1YJ9 H;  3CCL H;  3CCS H;  1KD1 J;  1YHQ H;  3J7Z M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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