4IOCE

Crystal structure of compound 4f bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
171
structure length
171
Chain Sequence
GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 24
structure length 171
sequence length 171
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4iocE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4iocE01
1VQ6E 3CF5E 1VQ4E 1VQME 1RL6A 3J7ZG 1NJIG 4U67E 3CPWE 1KD1G 4WFNE 2ZJQE 3CC7E 5H1SI 1YITE 2QEXE 4IOAE 1KC8G 1M90G 1YIJE 3CMEE 5GAHG 1VQ7E 1YJWE 4IO9E 1W2BE 5GADG 3G71E 1YHQE 5DM6E 1S72E 4WCEE 1K8AG 3CCVE 1VQLE 1QVGE 1KQSE 1K73G 1QVFE 3PIPE 3CD6E 3CXCE 1VQKE 4WFAE 5DM7E 3CCLE 1YI2E 1YJNE 5JVHE 1Q82G 1JJ2E 3CCJE 1VQOE 1VQPE 2ZJRE 2CQLA 3CCME 1N8RG 1M1KG 5GAEG 5MLCH 3G4SE 3CCSE 1K9MG 3CC2E 3CMAE 2QA4E 1Q86G 3OW2E 3DLLE 5JVGE 4WF9E 1VQ8E 1VQ9E 3I55E 3CCQE 5HL7E 2ZJPE 1VQNE 1VQ5E 3G6EE 2OTLE 3CCUE 4UY8G 5AN9B 4WFBE 4IOCE 5GAGG 3PIOE 3I56E 3CC4E 1Q81G 1Q7YG 3CCRE 2OTJE 1YJ9E 3CCEE
chains in the Genus database with same CATH superfamily
1VQ6E 2I5VO 3CF5E 1VQ4E 1VQME 2OY1O 1RL6A 3IGEA 3J7ZG 1NJIG 3AUMO 1FJ1E 4U67E 3CKGA 3CPWE 1KD1G 4WFNE 5B3MO 2ZJQE 2AF5A 3CC7E 5H1SI 2FKJA 1YITE 2QEXE 4IOAE 1P4PA 1KC8G 1YIJE 1M90G 3CMEE 5GAHG 1VQ7E 1YJWE 2OY8A 2OYBO 5B11O 4IO9E 1W2BE 5GADG 3G71E 1YHQE 5DM6E 1S72E 4WCEE 1K8AG 3CCVE 1VQLE 1QVGE 1KQSE 1K73G 1QVFE 3PIPE 3CD6E 3CXCE 1VQKE 4WFAE 1OSPO 5DM7E 3CCLE 1YI2E 1YJNE 5JVHE 1Q82G 1JJ2E 2OL6O 5B10O 3CCJE 1VQOE 1VQPE 2OL8O 2I5ZO 3IG9A 2ZJRE 2CQLA 3CCME 1N8RG 1M1KG 5GAEG 5MLCH 3G4SE 3CCSE 1K9MG 3CC2E 3CMAE 2QA4E 1Q86G 2OY5O 3CKFA 3OW2E 3DLLE 5JVGE 4WF9E 1VQ8E 1VQ9E 3I55E 2FKGA 3CCQE 5HL7E 2ZJPE 1VQNE 1VQ5E 2OL7A 3G6EE 2OTLE 3CCUE 4UY8G 1RJLC 5AN9B 4WFBE 4IOCE 2HKDA 2PI3O 5GAGG 5B2AO 3EC5A 2OY7A 3PIOE 3I56E 3CC4E 1Q81G 1Q7YG 3CCRE 2G8CO 2OTJE 1YJ9E 3CCEE
chains in the Genus database with same CATH topology
1VQ6E 3CF5E 1VQ4E 1VQME 1RL6A 3J7ZG 1NJIG 4U67E 3CPWE 1KD1G 4WFNE 2ZJQE 3CC7E 5H1SI 1YITE 2QEXE 4IOAE 1KC8G 1M90G 1YIJE 3CMEE 5GAHG 1VQ7E 1YJWE 4IO9E 1W2BE 5GADG 3G71E 1YHQE 5DM6E 1S72E 4WCEE 1K8AG 3CCVE 1VQLE 1QVGE 1KQSE 1K73G 1QVFE 3PIPE 3CD6E 3CXCE 1VQKE 4WFAE 5DM7E 3CCLE 1YI2E 1YJNE 5JVHE 1Q82G 1JJ2E 3CCJE 1VQOE 1VQPE 2ZJRE 2CQLA 3CCME 1N8RG 1M1KG 5GAEG 5MLCH 3G4SE 3CCSE 1K9MG 3CC2E 3CMAE 2QA4E 1Q86G 3OW2E 3DLLE 5JVGE 4WF9E 1VQ8E 1VQ9E 3I55E 3CCQE 5HL7E 2ZJPE 1VQNE 1VQ5E 3G6EE 2OTLE 3CCUE 4UY8G 5AN9B 4WFBE 4IOCE 5GAGG 3PIOE 3I56E 3CC4E 1Q81G 1Q7YG 3CCRE 2OTJE 1YJ9E 3CCEE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ6 E;  3CF5 E;  1VQ4 E;  1VQM E;  1RL6 A;  3J7Z G;  1NJI G;  4U67 E;  3CPW E;  1KD1 G;  4WFN E;  2ZJQ E;  3CC7 E;  5H1S I;  1YIT E;  2QEX E;  4IOA E;  1KC8 G;  1M90 G;  1YIJ E;  3CME E;  5GAH G;  1VQ7 E;  1YJW E;  4IO9 E;  1W2B E;  5GAD G;  3G71 E;  1YHQ E;  5DM6 E;  1S72 E;  4WCE E;  1K8A G;  3CCV E;  1VQL E;  1QVG E;  1KQS E;  1K73 G;  1QVF E;  3PIP E;  3CD6 E;  3CXC E;  1VQK E;  4WFA E;  5DM7 E;  3CCL E;  1YI2 E;  1YJN E;  5JVH E;  1Q82 G;  1JJ2 E;  3CCJ E;  1VQO E;  1VQP E;  2ZJR E;  2CQL A;  3CCM E;  1N8R G;  1M1K G;  5GAE G;  5MLC H;  3G4S E;  3CCS E;  1K9M G;  3CC2 E;  3CMA E;  2QA4 E;  1Q86 G;  3OW2 E;  3DLL E;  5JVG E;  4WF9 E;  1VQ8 E;  1VQ9 E;  3I55 E;  3CCQ E;  5HL7 E;  2ZJP E;  1VQN E;  1VQ5 E;  3G6E E;  2OTL E;  3CCU E;  4UY8 G;  5AN9 B;  4WFB E;  4IOC E;  5GAG G;  3PIO E;  3I56 E;  3CC4 E;  1Q81 G;  1Q7Y G;  3CCR E;  2OTJ E;  1YJ9 E;  3CCE E; 
#chains in the Genus database with same CATH topology
 1VQ6 E;  2I5V O;  3CF5 E;  1VQ4 E;  1VQM E;  2OY1 O;  1RL6 A;  3IGE A;  3J7Z G;  1NJI G;  3AUM O;  1FJ1 E;  4U67 E;  3CKG A;  3CPW E;  1KD1 G;  4WFN E;  5B3M O;  2ZJQ E;  2AF5 A;  3CC7 E;  5H1S I;  2FKJ A;  1YIT E;  2QEX E;  4IOA E;  1P4P A;  1KC8 G;  1YIJ E;  1M90 G;  3CME E;  5GAH G;  1VQ7 E;  1YJW E;  2OY8 A;  2OYB O;  5B11 O;  4IO9 E;  1W2B E;  5GAD G;  3G71 E;  1YHQ E;  5DM6 E;  1S72 E;  4WCE E;  1K8A G;  3CCV E;  1VQL E;  1QVG E;  1KQS E;  1K73 G;  1QVF E;  3PIP E;  3CD6 E;  3CXC E;  1VQK E;  4WFA E;  1OSP O;  5DM7 E;  3CCL E;  1YI2 E;  1YJN E;  5JVH E;  1Q82 G;  1JJ2 E;  2OL6 O;  5B10 O;  3CCJ E;  1VQO E;  1VQP E;  2OL8 O;  2I5Z O;  3IG9 A;  2ZJR E;  2CQL A;  3CCM E;  1N8R G;  1M1K G;  5GAE G;  5MLC H;  3G4S E;  3CCS E;  1K9M G;  3CC2 E;  3CMA E;  2QA4 E;  1Q86 G;  2OY5 O;  3CKF A;  3OW2 E;  3DLL E;  5JVG E;  4WF9 E;  1VQ8 E;  1VQ9 E;  3I55 E;  2FKG A;  3CCQ E;  5HL7 E;  2ZJP E;  1VQN E;  1VQ5 E;  2OL7 A;  3G6E E;  2OTL E;  3CCU E;  4UY8 G;  1RJL C;  5AN9 B;  4WFB E;  4IOC E;  2HKD A;  2PI3 O;  5GAG G;  5B2A O;  3EC5 A;  2OY7 A;  3PIO E;  3I56 E;  3CC4 E;  1Q81 G;  1Q7Y G;  3CCR E;  2G8C O;  2OTJ E;  1YJ9 E;  3CCE E; 
#chains in the Genus database with same CATH homology
 1VQ6 E;  3CF5 E;  1VQ4 E;  1VQM E;  1RL6 A;  3J7Z G;  1NJI G;  4U67 E;  3CPW E;  1KD1 G;  4WFN E;  2ZJQ E;  3CC7 E;  5H1S I;  1YIT E;  2QEX E;  4IOA E;  1KC8 G;  1M90 G;  1YIJ E;  3CME E;  5GAH G;  1VQ7 E;  1YJW E;  4IO9 E;  1W2B E;  5GAD G;  3G71 E;  1YHQ E;  5DM6 E;  1S72 E;  4WCE E;  1K8A G;  3CCV E;  1VQL E;  1QVG E;  1KQS E;  1K73 G;  1QVF E;  3PIP E;  3CD6 E;  3CXC E;  1VQK E;  4WFA E;  5DM7 E;  3CCL E;  1YI2 E;  1YJN E;  5JVH E;  1Q82 G;  1JJ2 E;  3CCJ E;  1VQO E;  1VQP E;  2ZJR E;  2CQL A;  3CCM E;  1N8R G;  1M1K G;  5GAE G;  5MLC H;  3G4S E;  3CCS E;  1K9M G;  3CC2 E;  3CMA E;  2QA4 E;  1Q86 G;  3OW2 E;  3DLL E;  5JVG E;  4WF9 E;  1VQ8 E;  1VQ9 E;  3I55 E;  3CCQ E;  5HL7 E;  2ZJP E;  1VQN E;  1VQ5 E;  3G6E E;  2OTL E;  3CCU E;  4UY8 G;  5AN9 B;  4WFB E;  4IOC E;  5GAG G;  3PIO E;  3I56 E;  3CC4 E;  1Q81 G;  1Q7Y G;  3CCR E;  2OTJ E;  1YJ9 E;  3CCE E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...