4IOCJ

Crystal structure of compound 4f bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 22
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome/ribosome inhibitor
molecule keywords 23S ribosomal RNA
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
total genus 22
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4iocJ01
1N8RJ 4UY8M 3CCJH 1VQNH 3DLLJ 1WKIA 1VQMH 1M1KJ 5JVHJ 2QEXH 4IO9J 1YIJH 3G6EH 3CCVH 5MLCO 2OTJH 4WFNJ 5JVGJ 3CC2H 1KC8J 1VQ4H 2ZJQJ 3CC7H 3OW2H 5AN9F 4WCEJ 1VQKH 3J7ZM 1YJNH 1YI2H 3I55H 3PIOJ 3CCLH 1VQPH 5H1SO 2PA2A 3G4SH 5GAEN 3CC4H 1M90J 5GAGN 1QVGH 1S72H 3G71H 1K73J 1Q86J 1JJ2H 1VQ9H 2ZJRJ 3CD6H 4WF9J 3CXCH 1Q7YJ 5DM7J 3CCEH 4WFBJ 5GAHN 3CF5J 1K9MJ 1YJ9H 1Q81J 4U67J 1VQOH 1VQ6H 3PIPJ 1YITH 1VQLH 3CCUH 3CCQH 1Y69K 1KD1J 5HL7J 3CCSH 2OTLH 1QVFH 3CMAH 2ZJPJ 5GADN 3I56H 4WFAJ 1KQSH 3CMEH 3CPWH 1NJIJ 1VQ8H 4IOAJ 2QA4H 5DM6J 1K8AJ 1VQ5H 1Q82J 1VQ7H 3CCRH 3CCMH 1YHQH 1W2BH 4IOCJ 1YJWH
chains in the Genus database with same CATH superfamily
2Q5WE 2W55B 2DSJA 1N8RJ 4UY8M 3C2VA 3CCJH 1VQNH 2WP4A 3DLLJ 4US8A 1JRPB 5EP8A 2JBMA 1WKIA 3TQVA 3AN1A 5AYXA 1N5WB 1OTPA 1VQMH 1M1KJ 3L4PA 5JVHJ 4EADA 1YTKA 3NRZC 2QEXH 4IO9J 1YIJH 1O4UA 1FMAE 3G6EH 4GA4A 3CCVH 2W54B 1QPOA 5MLCO 3H5QA 2OTJH 4WFNJ 5JVGJ 3FAHA 3PAJA 3CC2H 2WK6A 1KC8J 1VQ4H 1FO4A 2ZJQJ 3RPFA 3CC7H 5HUOA 3OW2H 4XR5A 5EY3A 2W3RB 5AN9F 2WK5A 4WCEJ 1VQKH 1V97A 3J7ZM 1YJNH 1YI2H 4X46A 3I55H 3PIOJ 2E3TA 3CCLH 1VQPH 5H1SO 4GA6A 2B7NA 2PA2A 3B9JC 3C2RA 3NVWC 1WYGA 1FIQC 3G4SH 5GAEN 1SIJA 3CC4H 1M90J 4KWVA 1N5XA 5GAGN 4YYYA 1QAPA 1QPQA 3AMZA 3WNZA 1QVGH 3C2OA 3WO1A 4IOCJ 3NS1C 1NVIE 2QIEA 3NVVC 1S72H 5AYZA 3G71H 5HULA 2OMDA 4USAA 4YEKA 1N62B 2B7QA 1K73J 1Q86J 4ZOHA 1JJ2H 1SB3A 1VQ9H 2ZJRJ 3CD6H 4WF9J 1RM6A 1JROB 3CXCH 3VMMA 2J0FA 1Q7YJ 5DM7J 3CCEH 3AM9A 4WFBJ 5GAHN 3CF5J 1NVJA 4C80A 3ETRC 1K9MJ 4GA5A 1YTEA 1YJ9H 1FFVB 4EAFA 5HUPA 3FC4A 3C2FA 3L0GA 4US9A 3EUB4 4U67J 1YJWH 1VQOH 1Q81J 1VQ6H 3PIPJ 2TPTA 4AP8A 1YITH 1VQLH 1DGJA 3CCUH 3CCQH 3BIIE 1Y69K 1KD1J 1ZXIB 5HL7J 1VDVA 3CCSH 1N60B 2OTLH 1N63B 1QVFH 1YTDA 3GNNA 3NVZC 3CMAH 2ZJPJ 5GADN 1AZYA 3I56H 3C2EA 3NVYC 3WO0A 4WFAJ 1UOUA 1KQSH 4C7ZA 1NJIJ 3CMEH 1VQ8H 3CPWH 4IOAJ 2QA4H 4LHMA 4I9AA 5DM6J 1K8AJ 2I14A 1VQ5H 1X1OA 2W3SB 1Q82J 1FFUB 1VQ7H 2B7PA 1BRWA 3CCRH 3SR6C 1VLBA 3CCMH 1FM0E 2I1OA 4C7YA 4KWWA 1YHQH 1W2BH 1N61B 1QPNA 5AYYA 1QPRA 5MPOC
chains in the Genus database with same CATH topology
1N8RJ 4UY8M 3CCJH 1VQNH 3DLLJ 1WKIA 1VQMH 1M1KJ 5JVHJ 2QEXH 4IO9J 1YIJH 3G6EH 3CCVH 5MLCO 2OTJH 4WFNJ 5JVGJ 3CC2H 1KC8J 1VQ4H 2ZJQJ 3CC7H 3OW2H 5AN9F 4WCEJ 1VQKH 3J7ZM 1YJNH 1YI2H 3I55H 3PIOJ 3CCLH 1VQPH 5H1SO 2PA2A 3G4SH 5GAEN 3CC4H 1M90J 5GAGN 1QVGH 1S72H 3G71H 1K73J 1Q86J 1JJ2H 1VQ9H 2ZJRJ 3CD6H 4WF9J 3CXCH 1Q7YJ 5DM7J 3CCEH 4WFBJ 5GAHN 3CF5J 1K9MJ 1YJ9H 1Q81J 4U67J 1VQOH 1VQ6H 3PIPJ 1YITH 1VQLH 3CCUH 3CCQH 1Y69K 1KD1J 5HL7J 3CCSH 2OTLH 1QVFH 3CMAH 2ZJPJ 5GADN 3I56H 4WFAJ 1KQSH 3CMEH 3CPWH 1NJIJ 1VQ8H 4IOAJ 2QA4H 5DM6J 1K8AJ 1VQ5H 1Q82J 1VQ7H 3CCRH 3CCMH 1YHQH 1W2BH 4IOCJ 1YJWH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N8R J;  4UY8 M;  3CCJ H;  1VQN H;  3DLL J;  1WKI A;  1VQM H;  1M1K J;  5JVH J;  2QEX H;  4IO9 J;  1YIJ H;  3G6E H;  3CCV H;  5MLC O;  2OTJ H;  4WFN J;  5JVG J;  3CC2 H;  1KC8 J;  1VQ4 H;  2ZJQ J;  3CC7 H;  3OW2 H;  5AN9 F;  4WCE J;  1VQK H;  3J7Z M;  1YJN H;  1YI2 H;  3I55 H;  3PIO J;  3CCL H;  1VQP H;  5H1S O;  2PA2 A;  3G4S H;  5GAE N;  3CC4 H;  1M90 J;  5GAG N;  1QVG H;  1S72 H;  3G71 H;  1K73 J;  1Q86 J;  1JJ2 H;  1VQ9 H;  2ZJR J;  3CD6 H;  4WF9 J;  3CXC H;  1Q7Y J;  5DM7 J;  3CCE H;  4WFB J;  5GAH N;  3CF5 J;  1K9M J;  1YJ9 H;  1Q81 J;  4U67 J;  1VQO H;  1VQ6 H;  3PIP J;  1YIT H;  1VQL H;  3CCU H;  3CCQ H;  1Y69 K;  1KD1 J;  5HL7 J;  3CCS H;  2OTL H;  1QVF H;  3CMA H;  2ZJP J;  5GAD N;  3I56 H;  4WFA J;  1KQS H;  3CME H;  3CPW H;  1NJI J;  1VQ8 H;  4IOA J;  2QA4 H;  5DM6 J;  1K8A J;  1VQ5 H;  1Q82 J;  1VQ7 H;  3CCR H;  3CCM H;  1YHQ H;  1W2B H;  4IOC J;  1YJW H; 
#chains in the Genus database with same CATH topology
 2Q5W E;  2W55 B;  2DSJ A;  1N8R J;  4UY8 M;  3C2V A;  3CCJ H;  1VQN H;  2WP4 A;  3DLL J;  4US8 A;  1JRP B;  5EP8 A;  2JBM A;  1WKI A;  3TQV A;  3AN1 A;  5AYX A;  1N5W B;  1OTP A;  1VQM H;  1M1K J;  3L4P A;  5JVH J;  4EAD A;  1YTK A;  3NRZ C;  2QEX H;  4IO9 J;  1YIJ H;  1O4U A;  1FMA E;  3G6E H;  4GA4 A;  3CCV H;  2W54 B;  1QPO A;  5MLC O;  3H5Q A;  2OTJ H;  4WFN J;  5JVG J;  3FAH A;  3PAJ A;  3CC2 H;  2WK6 A;  1KC8 J;  1VQ4 H;  1FO4 A;  2ZJQ J;  3RPF A;  3CC7 H;  5HUO A;  3OW2 H;  4XR5 A;  5EY3 A;  2W3R B;  5AN9 F;  2WK5 A;  4WCE J;  1VQK H;  1V97 A;  3J7Z M;  1YJN H;  1YI2 H;  4X46 A;  3I55 H;  3PIO J;  2E3T A;  3CCL H;  1VQP H;  5H1S O;  4GA6 A;  2B7N A;  2PA2 A;  3B9J C;  3C2R A;  3NVW C;  1WYG A;  1FIQ C;  3G4S H;  5GAE N;  1SIJ A;  3CC4 H;  1M90 J;  4KWV A;  1N5X A;  5GAG N;  4YYY A;  1QAP A;  1QPQ A;  3AMZ A;  3WNZ A;  1QVG H;  3C2O A;  3WO1 A;  4IOC J;  3NS1 C;  1NVI E;  2QIE A;  3NVV C;  1S72 H;  5AYZ A;  3G71 H;  5HUL A;  2OMD A;  4USA A;  4YEK A;  1N62 B;  2B7Q A;  1K73 J;  1Q86 J;  4ZOH A;  1JJ2 H;  1SB3 A;  1VQ9 H;  2ZJR J;  3CD6 H;  4WF9 J;  1RM6 A;  1JRO B;  3CXC H;  3VMM A;  2J0F A;  1Q7Y J;  5DM7 J;  3CCE H;  3AM9 A;  4WFB J;  5GAH N;  3CF5 J;  1NVJ A;  4C80 A;  3ETR C;  1K9M J;  4GA5 A;  1YTE A;  1YJ9 H;  1FFV B;  4EAF A;  5HUP A;  3FC4 A;  3C2F A;  3L0G A;  4US9 A;  3EUB 4;  4U67 J;  1YJW H;  1VQO H;  1Q81 J;  1VQ6 H;  3PIP J;  2TPT A;  4AP8 A;  1YIT H;  1VQL H;  1DGJ A;  3CCU H;  3CCQ H;  3BII E;  1Y69 K;  1KD1 J;  1ZXI B;  5HL7 J;  1VDV A;  3CCS H;  1N60 B;  2OTL H;  1N63 B;  1QVF H;  1YTD A;  3GNN A;  3NVZ C;  3CMA H;  2ZJP J;  5GAD N;  1AZY A;  3I56 H;  3C2E A;  3NVY C;  3WO0 A;  4WFA J;  1UOU A;  1KQS H;  4C7Z A;  1NJI J;  3CME H;  1VQ8 H;  3CPW H;  4IOA J;  2QA4 H;  4LHM A;  4I9A A;  5DM6 J;  1K8A J;  2I14 A;  1VQ5 H;  1X1O A;  2W3S B;  1Q82 J;  1FFU B;  1VQ7 H;  2B7P A;  1BRW A;  3CCR H;  3SR6 C;  1VLB A;  3CCM H;  1FM0 E;  2I1O A;  4C7Y A;  4KWW A;  1YHQ H;  1W2B H;  1N61 B;  1QPN A;  5AYY A;  1QPR A;  5MPO C; 
#chains in the Genus database with same CATH homology
 1N8R J;  4UY8 M;  3CCJ H;  1VQN H;  3DLL J;  1WKI A;  1VQM H;  1M1K J;  5JVH J;  2QEX H;  4IO9 J;  1YIJ H;  3G6E H;  3CCV H;  5MLC O;  2OTJ H;  4WFN J;  5JVG J;  3CC2 H;  1KC8 J;  1VQ4 H;  2ZJQ J;  3CC7 H;  3OW2 H;  5AN9 F;  4WCE J;  1VQK H;  3J7Z M;  1YJN H;  1YI2 H;  3I55 H;  3PIO J;  3CCL H;  1VQP H;  5H1S O;  2PA2 A;  3G4S H;  5GAE N;  3CC4 H;  1M90 J;  5GAG N;  1QVG H;  1S72 H;  3G71 H;  1K73 J;  1Q86 J;  1JJ2 H;  1VQ9 H;  2ZJR J;  3CD6 H;  4WF9 J;  3CXC H;  1Q7Y J;  5DM7 J;  3CCE H;  4WFB J;  5GAH N;  3CF5 J;  1K9M J;  1YJ9 H;  1Q81 J;  4U67 J;  1VQO H;  1VQ6 H;  3PIP J;  1YIT H;  1VQL H;  3CCU H;  3CCQ H;  1Y69 K;  1KD1 J;  5HL7 J;  3CCS H;  2OTL H;  1QVF H;  3CMA H;  2ZJP J;  5GAD N;  3I56 H;  4WFA J;  1KQS H;  3CME H;  3CPW H;  1NJI J;  1VQ8 H;  4IOA J;  2QA4 H;  5DM6 J;  1K8A J;  1VQ5 H;  1Q82 J;  1VQ7 H;  3CCR H;  3CCM H;  1YHQ H;  1W2B H;  4IOC J;  1YJW H; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...