4IPVA

Crystal structure of pseudomonas aeruginosa (strain: pao1) type iv minor pilin fimu in space group p65
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
129
structure length
129
Chain Sequence
NELQSAAEELNAMLQYARSEAVSQRRAISIQALKDKDWGKGLSIGVLASGSIAAPLRKHDGFRAATLTAKEKSAVEHLTFTANGTLVPPTERTFAICQNGKTDGGRVLSISQAGRIQLEPSSKAPQSCY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords FimU protein
publication title Minor pilin FimU controls P. aeruginosa type IV pilus extension/retraction dynamics independently of other minor components
rcsb
source organism Pseudomonas aeruginosa
total genus 30
structure length 129
sequence length 129
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12019 GspH Type II transport protein GspH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.55.40.10 Alpha Beta 3-Layer(bab) Sandwich minor pseudopilin epsh fold minor pseudopilin epsh domain 4ipvA00
4IPVA 4IPUA 4DQ9A 2KNQA 2QV8A
chains in the Genus database with same CATH superfamily
4IPVA 4IPUA 4DQ9A 2KNQA 2QV8A
chains in the Genus database with same CATH topology
4IPVA 4IPUA 4DQ9A 2KNQA 2QV8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IPV A;  4IPU A;  4DQ9 A;  2KNQ A;  2QV8 A; 
#chains in the Genus database with same CATH topology
 4IPV A;  4IPU A;  4DQ9 A;  2KNQ A;  2QV8 A; 
#chains in the Genus database with same CATH homology
 4IPV A;  4IPU A;  4DQ9 A;  2KNQ A;  2QV8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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