4J3CA

Crystal structure of 16s ribosomal rna methyltransferase rsme
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
Knots found
sequence length
239
structure length
232
Chain Sequence
MQRLFIENALHAGAKHEATREQFNVLRLGEGSSLLVFNGRDGEWRAEIAMPSRQAVLVAVEQTRPQPAPCDLVYLFAPLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQGKIGSLERVRANVIEAAEQCGVLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGSQNPLPILEGIAERRLALLIGPEGGFSEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQATLGDWR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Ribosomal RNA small subunit methyltransferase E
publication title Crystal structure of 16S ribosomal RNA methyltransferase RsmE
rcsb
source organism Sinorhizobium meliloti
total genus 55
structure length 232
sequence length 239
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase.
pdb deposition date 2013-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 4j3cA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4j3cA02
4YQGA 4YQSA 1NS5A 3AIAA 4YQOA 1UALA 4H3ZA 3NK7A 3BBDA 4YVGA 4KDZA 4YQBA 4YQPA 2YY8A 1TO0A 1V6ZA 3IC6A 4J3CA 4YQ8A 3ONPA 4JAKA 1MXIA 2I6DA 4YPYA 4XBOA 4YQAA 2NWAA 3KTYA 4YQ1A 1O6DA 1P9PA 4YQRA 1ZJRA 3BBHA 4PZKA 3NK6A 3QUVA 5GMCA 4YQ5A 4YVIA 2EGWA 3BBEA 4YVHA 1UAMA 3KNUA 4YQ0A 4YQLA 4KGNA 4YQIA 4CNFA 4YQDA 2V3KA 1VH0A 4YQ2A 4YPZA 3ILKA 4CNGA 3KW2A 1X7OA 4X3MA 4YVKA 4YQ3A 4YQKA 4MCCA 3IEFA 1NXZA 3N4JA 4YQNA 1GZ0A 4YPWA 2EGVA 4E8BA 3KY7A 4L69A 1UAKA 3GYQA 2O3AA 1Z85A 3L8UA 4MCBA 3AXZA 4YQ9A 4YVJA 4JALA 1IPAA 1V2XA 1J85A 4YQ7A 1OY5A 3DCMX 4X3LA 4YQCA 3OIJA 5CO4A 4YQJA 5FAIA 1VHKA 1UAJA 4FAKA 1X7PA 2HA8A 2QMMA 4CNEA 4YQ4A 2Z0YA 4YPXA 5GM8A 3OIIA 1VHYA 4H3YA 5GMBA 4YQTA 4YQ6A 2CX8A 2V3JA 4RG1A 3N4KA 3AI9X 4YQQA 5D9FA 3O7BA 3E5YA 4CNDA 4MCDA 2QWVA 4IG6A 1K3RA 3OINA
chains in the Genus database with same CATH superfamily
4YQGA 4YQSA 5IZNA 1NS5A 4UY88 3AIAA 5GAHW 4YQOA 5JVHS 1UALA 4H3ZA 3NK7A 3BBDA 4YVGA 4IOAS 4U67S 4KDZA 4YQBA 4YQPA 2YY8A 1TO0A 1V6ZA 5DM7S 3IC6A 1QRTA 4J3CA 2HZ7A 4YQ8A 3ONPA 4JAKA 1MXIA 4JWGA 2I6DA 2ZJQS 4YPYA 2RD2A 3X1LB 4XBOA 4YQAA 2NWAA 4H4KA 3CF5S 3KTYA 4H3SA 4YQ1A 3W2WB 1O6DA 1P9PA 4YQRA 1ZJRA 3BBHA 4PZKA 3NK6A 3QUVA 5GMCA 4YQ5A 4YVIA 2EGWA 3BBEA 4WFAS 4JYZA 2G5DA 4IO9S 4JXZA 1EUQA 1UAMA 3KNUA 4YVHA 4YQ0A 4YQLA 4KGNA 3PIPS 1GTRA 1QRUA 4YQIA 4CNFA 4YQDA 2V3KA 1B75A 1NYLA 1VH0A 3AIIA 4FMWA 4YQ2A 4IOCS 5GAGW 4YPZA 3ILKA 4CNGA 3KW2A 1X7OA 4P2BA 4X3MA 5GAEW 2GAEA 4YVKA 4YQ3A 4YQKA 4MCCA 4V194 3IEFA 3J7ZV 4WFNS 1NXZA 3N4JA 4YQNA 1GTSA 1GZ0A 3CZBA 4YPWA 5GADW 2EGVA 4WCES 1DFUP 4E8BA 5HL7S 3PIOS 3KY7A 4L69A 2PJJA 4JXXA 2PICA 2PI8A 2RE8A 1UAKA 3GYQA 2O3AA 1D6KA 1Z85A 3L8UA 4MCBA 5JVGS 3AXZA 2G6GA 4YQ9A 4YVJA 1EXDA 2ZJPS 1ZJWA 5DM6S 1O0BA 1QRSA 4JALA 1IPAA 1V2XA 1J85A 4YQ7A 1OY5A 3DCMX 4X3LA 4YQCA 1O0CA 2ZJRS 1UDXA 3OIJA 5CO4A 4YQJA 5FAIA 1VHKA 1UAJA 4FAKA 1X7PA 2HA8A 2AE0X 2QMMA 4CNEA 4YQ4A 2Z0YA 4YPXA 4JWFA 5GM8A 1EUYA 5BNZA 1QTQA 1VHYA 3OIIA 4H3YA 5GMBA 4YQTA 4YQ6A 2CX8A 2V3JA 4RG1A 3OINA 2PNWA 3N4KA 3DLLS 3AI9X 4YQQA 5D9FA 4WF9S 3W2VB 3O7BA 1FEUA 4JWHA 4WFBS 3E5YA 4CNDA 4MCDA 2QWVA 4IG6A 1K3RA 4JWJA
chains in the Genus database with same CATH topology
4YQGA 4YQSA 1NS5A 3AIAA 4YQOA 1UALA 4H3ZA 3NK7A 3BBDA 4YVGA 4KDZA 4YQBA 4YQPA 2YY8A 1TO0A 1V6ZA 3IC6A 4J3CA 4YQ8A 3ONPA 4JAKA 1MXIA 4JWGA 2I6DA 4YPYA 4XBOA 4YQAA 2NWAA 3KTYA 4YQ1A 1O6DA 1P9PA 4YQRA 1ZJRA 3BBHA 4PZKA 3NK6A 3QUVA 5GMCA 4YQ5A 4YVIA 2EGWA 3BBEA 4YVHA 1UAMA 3KNUA 4YQ0A 4YQLA 4KGNA 4YQIA 4CNFA 4YQDA 2V3KA 1VH0A 4FMWA 4YQ2A 4YPZA 3ILKA 4CNGA 3KW2A 1X7OA 4X3MA 4YVKA 4YQ3A 4YQKA 4MCCA 3IEFA 1NXZA 3N4JA 4YQNA 1GZ0A 4YPWA 2EGVA 4E8BA 3KY7A 4L69A 1UAKA 3GYQA 2O3AA 1Z85A 3L8UA 4MCBA 3AXZA 4YQ9A 4YVJA 4JALA 1IPAA 1V2XA 1J85A 4YQ7A 1OY5A 3DCMX 4X3LA 4YQCA 3OIJA 5CO4A 4YQJA 5FAIA 1VHKA 1UAJA 4FAKA 1X7PA 2HA8A 2QMMA 4CNEA 4YQ4A 2Z0YA 4YPXA 4JWFA 5GM8A 3OIIA 1VHYA 4H3YA 5GMBA 4YQTA 4YQ6A 2CX8A 2V3JA 4RG1A 3OINA 3N4KA 3AI9X 4YQQA 5D9FA 3O7BA 4JWHA 3E5YA 4CNDA 4MCDA 2QWVA 4IG6A 1K3RA 4JWJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQG A;  4YQS A;  1NS5 A;  3AIA A;  4YQO A;  1UAL A;  4H3Z A;  3NK7 A;  3BBD A;  4YVG A;  4KDZ A;  4YQB A;  4YQP A;  2YY8 A;  1TO0 A;  1V6Z A;  3IC6 A;  4J3C A;  4YQ8 A;  3ONP A;  4JAK A;  1MXI A;  2I6D A;  4YPY A;  4XBO A;  4YQA A;  2NWA A;  3KTY A;  4YQ1 A;  1O6D A;  1P9P A;  4YQR A;  1ZJR A;  3BBH A;  4PZK A;  3NK6 A;  3QUV A;  5GMC A;  4YQ5 A;  4YVI A;  2EGW A;  3BBE A;  4YVH A;  1UAM A;  3KNU A;  4YQ0 A;  4YQL A;  4KGN A;  4YQI A;  4CNF A;  4YQD A;  2V3K A;  1VH0 A;  4YQ2 A;  4YPZ A;  3ILK A;  4CNG A;  3KW2 A;  1X7O A;  4X3M A;  4YVK A;  4YQ3 A;  4YQK A;  4MCC A;  3IEF A;  1NXZ A;  3N4J A;  4YQN A;  1GZ0 A;  4YPW A;  2EGV A;  4E8B A;  3KY7 A;  4L69 A;  1UAK A;  3GYQ A;  2O3A A;  1Z85 A;  3L8U A;  4MCB A;  3AXZ A;  4YQ9 A;  4YVJ A;  4JAL A;  1IPA A;  1V2X A;  1J85 A;  4YQ7 A;  1OY5 A;  3DCM X;  4X3L A;  4YQC A;  3OIJ A;  5CO4 A;  4YQJ A;  5FAI A;  1VHK A;  1UAJ A;  4FAK A;  1X7P A;  2HA8 A;  2QMM A;  4CNE A;  4YQ4 A;  2Z0Y A;  4YPX A;  5GM8 A;  3OII A;  1VHY A;  4H3Y A;  5GMB A;  4YQT A;  4YQ6 A;  2CX8 A;  2V3J A;  4RG1 A;  3N4K A;  3AI9 X;  4YQQ A;  5D9F A;  3O7B A;  3E5Y A;  4CND A;  4MCD A;  2QWV A;  4IG6 A;  1K3R A;  3OIN A; 
#chains in the Genus database with same CATH topology
 4YQG A;  4YQS A;  5IZN A;  1NS5 A;  4UY8 8;  3AIA A;  5GAH W;  4YQO A;  5JVH S;  1UAL A;  4H3Z A;  3NK7 A;  3BBD A;  4YVG A;  4IOA S;  4U67 S;  4KDZ A;  4YQB A;  4YQP A;  2YY8 A;  1TO0 A;  1V6Z A;  5DM7 S;  3IC6 A;  1QRT A;  4J3C A;  2HZ7 A;  4YQ8 A;  3ONP A;  4JAK A;  1MXI A;  4JWG A;  2I6D A;  2ZJQ S;  4YPY A;  2RD2 A;  3X1L B;  4XBO A;  4YQA A;  2NWA A;  4H4K A;  3CF5 S;  3KTY A;  4H3S A;  4YQ1 A;  3W2W B;  1O6D A;  1P9P A;  4YQR A;  1ZJR A;  3BBH A;  4PZK A;  3NK6 A;  3QUV A;  5GMC A;  4YQ5 A;  4YVI A;  2EGW A;  3BBE A;  4WFA S;  4JYZ A;  2G5D A;  4IO9 S;  4JXZ A;  1EUQ A;  1UAM A;  3KNU A;  4YVH A;  4YQ0 A;  4YQL A;  4KGN A;  3PIP S;  1GTR A;  1QRU A;  4YQI A;  4CNF A;  4YQD A;  2V3K A;  1B75 A;  1NYL A;  1VH0 A;  3AII A;  4FMW A;  4YQ2 A;  4IOC S;  5GAG W;  4YPZ A;  3ILK A;  4CNG A;  3KW2 A;  1X7O A;  4P2B A;  4X3M A;  5GAE W;  2GAE A;  4YVK A;  4YQ3 A;  4YQK A;  4MCC A;  4V19 4;  3IEF A;  3J7Z V;  4WFN S;  1NXZ A;  3N4J A;  4YQN A;  1GTS A;  1GZ0 A;  3CZB A;  4YPW A;  5GAD W;  2EGV A;  4WCE S;  1DFU P;  4E8B A;  5HL7 S;  3PIO S;  3KY7 A;  4L69 A;  2PJJ A;  4JXX A;  2PIC A;  2PI8 A;  2RE8 A;  1UAK A;  3GYQ A;  2O3A A;  1D6K A;  1Z85 A;  3L8U A;  4MCB A;  5JVG S;  3AXZ A;  2G6G A;  4YQ9 A;  4YVJ A;  1EXD A;  2ZJP S;  1ZJW A;  5DM6 S;  1O0B A;  1QRS A;  4JAL A;  1IPA A;  1V2X A;  1J85 A;  4YQ7 A;  1OY5 A;  3DCM X;  4X3L A;  4YQC A;  1O0C A;  2ZJR S;  1UDX A;  3OIJ A;  5CO4 A;  4YQJ A;  5FAI A;  1VHK A;  1UAJ A;  4FAK A;  1X7P A;  2HA8 A;  2AE0 X;  2QMM A;  4CNE A;  4YQ4 A;  2Z0Y A;  4YPX A;  4JWF A;  5GM8 A;  1EUY A;  5BNZ A;  1QTQ A;  1VHY A;  3OII A;  4H3Y A;  5GMB A;  4YQT A;  4YQ6 A;  2CX8 A;  2V3J A;  4RG1 A;  3OIN A;  2PNW A;  3N4K A;  3DLL S;  3AI9 X;  4YQQ A;  5D9F A;  4WF9 S;  3W2V B;  3O7B A;  1FEU A;  4JWH A;  4WFB S;  3E5Y A;  4CND A;  4MCD A;  2QWV A;  4IG6 A;  1K3R A;  4JWJ A; 
#chains in the Genus database with same CATH homology
 4YQG A;  4YQS A;  1NS5 A;  3AIA A;  4YQO A;  1UAL A;  4H3Z A;  3NK7 A;  3BBD A;  4YVG A;  4KDZ A;  4YQB A;  4YQP A;  2YY8 A;  1TO0 A;  1V6Z A;  3IC6 A;  4J3C A;  4YQ8 A;  3ONP A;  4JAK A;  1MXI A;  4JWG A;  2I6D A;  4YPY A;  4XBO A;  4YQA A;  2NWA A;  3KTY A;  4YQ1 A;  1O6D A;  1P9P A;  4YQR A;  1ZJR A;  3BBH A;  4PZK A;  3NK6 A;  3QUV A;  5GMC A;  4YQ5 A;  4YVI A;  2EGW A;  3BBE A;  4YVH A;  1UAM A;  3KNU A;  4YQ0 A;  4YQL A;  4KGN A;  4YQI A;  4CNF A;  4YQD A;  2V3K A;  1VH0 A;  4FMW A;  4YQ2 A;  4YPZ A;  3ILK A;  4CNG A;  3KW2 A;  1X7O A;  4X3M A;  4YVK A;  4YQ3 A;  4YQK A;  4MCC A;  3IEF A;  1NXZ A;  3N4J A;  4YQN A;  1GZ0 A;  4YPW A;  2EGV A;  4E8B A;  3KY7 A;  4L69 A;  1UAK A;  3GYQ A;  2O3A A;  1Z85 A;  3L8U A;  4MCB A;  3AXZ A;  4YQ9 A;  4YVJ A;  4JAL A;  1IPA A;  1V2X A;  1J85 A;  4YQ7 A;  1OY5 A;  3DCM X;  4X3L A;  4YQC A;  3OIJ A;  5CO4 A;  4YQJ A;  5FAI A;  1VHK A;  1UAJ A;  4FAK A;  1X7P A;  2HA8 A;  2QMM A;  4CNE A;  4YQ4 A;  2Z0Y A;  4YPX A;  4JWF A;  5GM8 A;  3OII A;  1VHY A;  4H3Y A;  5GMB A;  4YQT A;  4YQ6 A;  2CX8 A;  2V3J A;  4RG1 A;  3OIN A;  3N4K A;  3AI9 X;  4YQQ A;  5D9F A;  3O7B A;  4JWH A;  3E5Y A;  4CND A;  4MCD A;  2QWV A;  4IG6 A;  1K3R A;  4JWJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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