4JHYA

Crystal structure of a tbp-like protein (bdi_3606) from parabacteroides distasonis atcc 8503 at 1.90 a resolution
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
156
structure length
156
Chain Sequence
ECAPMKNGKVCYSDDVEIENTSKLEIFNAINAWAKKSYGKDVFLSNVNSNKNKGTIFVSSKVELLLNDTDKTIIKYKMRITCFDNRYTIEASDIVYQYDPLNDKKYKTYKAEDVIANNGDSNTIALIKDPKLFCNATFFFVENLFADVFDAAQNAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein
publication title Crystal structure of a hypothetical protein (BDI_3606) from Parabacteroides distasonis ATCC 8503 at 1.90 A resolution
rcsb
source organism Parabacteroides distasonis
total genus 40
structure length 156
sequence length 156
ec nomenclature
pdb deposition date 2013-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14730 DUF4468 Domain of unknown function (DUF4468) with TBP-like fold
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.530.80 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 4jhyA00
4E6FA 4JHYA
chains in the Genus database with same CATH superfamily
1KCMA 2LPXA 4GY9A 3P0LA 2MOUA 4JHGA 4DSCA 4QDFB 4A80A 5C9YA 4MAPA 3KL1A 1LN3A 4IHRA 3TFZA 2LEQA 3OTLA 3TVQA 4JHIA 4NCAA 3TGOC 5I9JA 4M9BA 2E3NA 5JNNA 3UJLA 4JHYA 3Q64A 2K5GA 2IL5A 2M89A 3QN1A 4N0GC 4Q0KA 4C9IA 2A1LA 1T27A 1BTVA 2QIMA 3NMVA 1VJHA 2E3MA 3WG8A 4A81A 4IGXA 4WVOA 3HK2A 3P9VA 3RT0C 1X53A 3PU2A 3HJFA 5AMWA 2I9YA 3GB4A 3GKEA 2LAKA 2KF2A 4IGYA 2KCZA 4IGWA 4REIA 2LCGA 4C9CA 1TXCA 2LF2A 3TVRA 1H2OA 5I8FA 4BKCA 2FFSA 2L8OA 2PCSA 1E09A 4JHHA 1XFSA 2NS9A 3KDIA 3R6PA 4JDAA 2L65A 3UIDA 2WQLA 3NS2A 4XRTA 2E3PA 4A86A 2GKDA 1IFVA 4FPWA 4C94A 3KB0A 4REHA 2REZA 4JDLA 5E4DA 3JRSA 4KPYA 1QMRA 4IH0A 4IH2A 4MNSA 3KAZA 4A8UA 1BV1A 3C0VA 1EM2A 3GTSA 4NCBA 3KAYA 3NMTA 3Q63A 2E3OA 3QSZA 3F08A 3NR4A 2QPVA 1LN2A 2RERA 4QIPA 3UQHA 1XN5A 3W9RA 3K90A 3TL1A 3OH8A 2N4BA 3H3TA 2E3QA 3HM9A 4QDCA 2D4RA 2L9PA 3P51A 4PSBA 1TW0A 3H3QA 3IJTA 3NEGA 3Q6AA 4QDFA 1FM4A 3HO1A 4N76A 4E6FA 1FSKA 3JRQB 3GL0A 2FLHA 4A84A 3KLXA 4MA6A 2LAFA 2KEWA 4REJA 4XRWA 4Y31A 3CNWA 5E46A 2ZYLA 3NMNA 4A85A 3GTEA 3NEFA 4LA7A 4R7KA 3FO5A 3NMHA 3OJIA 2KTEA 3KDJA 2LE1A 3NMPA 4BK7A 4N47A 3ELIA 5JO2A 2E3SA 1XDFA 4A87A 3HXMA 3K3KA 1B6FA 2VQ5A 4N41A 3NJ0A 4N3EA 3H3RA 2BK0A 3RT2A 4B9RA 3GOBA 3F73A 1LLTA 2YH6A 2LUZA 4A88A 3KB3A 2Z9YA 1JSSA 4QDDA 1LN1A 4QCKA 3GGNA 3KDHA 2NN5A 4LGAA 1Z94A 2LGHA 3ZVUA 4M9WA 5EKQC 3OQUA 4RYVA 3NI8A 2E3RA 2K7HA 1UW5A 2VNEA 3E85A 3RD6A 2N4AA 3W9KA 4BK6A 3H3SA 3NJ1A 2PSOA 2EJXA 4OICA 1XN6A 4LG5A 4A8GA 4DS8A 3IE5A 4BKDA 4BTZA 4DSBA 5JO1A 4IGVA 3DLHA 3DLBA 2LDKA 3GL2A 3NQNA 4Z3LA 1ICXA 2LIOA 1T17A 2M47A 3PUTA 5E4BA 5BRLA 1XUVA 2R55A 3NJOA 4LGBA 4A83A 2Q3QA 3HVRA 2RESA 2Z9ZA 5E4MA 4A8VA 1ZXFA
chains in the Genus database with same CATH topology
1KCMA 2LPXA 4GY9A 3P0LA 2MOUA 4JHGA 4DSCA 4QDFB 4A80A 5C9YA 4MAPA 3KL1A 1LN3A 4IHRA 3TFZA 2LEQA 3OTLA 3TVQA 4JHIA 4NCAA 3TGOC 5I9JA 4M9BA 2E3NA 5JNNA 3UJLA 4JHYA 3Q64A 2K5GA 2IL5A 2M89A 3QN1A 4N0GC 4Q0KA 4C9IA 2A1LA 1T27A 1BTVA 2QIMA 3NMVA 1VJHA 2E3MA 3WG8A 4A81A 4IGXA 4WVOA 3HK2A 3P9VA 3RT0C 1X53A 3PU2A 3HJFA 5AMWA 2I9YA 3GB4A 3GKEA 2LAKA 2KF2A 4IGYA 2KCZA 4IGWA 4REIA 2LCGA 4C9CA 1TXCA 2LF2A 3TVRA 1H2OA 5I8FA 4BKCA 2FFSA 2L8OA 2PCSA 1E09A 4JHHA 1XFSA 2NS9A 3KDIA 3R6PA 4JDAA 2L65A 3UIDA 2WQLA 3NS2A 4XRTA 2E3PA 4A86A 2GKDA 1IFVA 4FPWA 4C94A 3KB0A 4REHA 2REZA 4JDLA 5E4DA 3JRSA 4KPYA 1QMRA 4IH0A 4IH2A 4MNSA 3KAZA 4A8UA 1BV1A 3C0VA 1EM2A 3GTSA 4NCBA 3KAYA 3NMTA 3Q63A 2E3OA 3QSZA 3F08A 3NR4A 2QPVA 1LN2A 2RERA 4QIPA 3UQHA 1XN5A 3W9RA 3K90A 3TL1A 3OH8A 2N4BA 3H3TA 2E3QA 3HM9A 4QDCA 2D4RA 2L9PA 3P51A 4PSBA 1TW0A 3H3QA 3IJTA 3NEGA 3Q6AA 4QDFA 1FM4A 3HO1A 4N76A 4E6FA 1FSKA 3JRQB 3GL0A 2FLHA 4A84A 3KLXA 4MA6A 2LAFA 2KEWA 4REJA 4XRWA 4Y31A 3CNWA 5E46A 2ZYLA 3NMNA 4A85A 3GTEA 3NEFA 4LA7A 4R7KA 3FO5A 3NMHA 3OJIA 2KTEA 3KDJA 2LE1A 3NMPA 4BK7A 4N47A 3ELIA 5JO2A 2E3SA 1XDFA 4A87A 3HXMA 3K3KA 1B6FA 2VQ5A 4N41A 3NJ0A 4N3EA 3H3RA 2BK0A 3RT2A 4B9RA 3GOBA 3F73A 1LLTA 2YH6A 2LUZA 4A88A 3KB3A 2Z9YA 1JSSA 4QDDA 1LN1A 4QCKA 3GGNA 3KDHA 2NN5A 4LGAA 1Z94A 2LGHA 3ZVUA 4M9WA 5EKQC 3OQUA 4RYVA 3NI8A 2E3RA 2K7HA 1UW5A 2VNEA 3E85A 3RD6A 2N4AA 3W9KA 4BK6A 3H3SA 3NJ1A 2PSOA 2EJXA 4OICA 1XN6A 4LG5A 4A8GA 4DS8A 3IE5A 4BKDA 4BTZA 4DSBA 5JO1A 4IGVA 3DLHA 3DLBA 2LDKA 3GL2A 3NQNA 4Z3LA 1ICXA 2LIOA 1T17A 2M47A 3PUTA 5E4BA 5BRLA 1XUVA 2R55A 3NJOA 4LGBA 4A83A 2Q3QA 3HVRA 2RESA 2Z9ZA 5E4MA 4A8VA 1ZXFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E6F A;  4JHY A; 
#chains in the Genus database with same CATH topology
 1KCM A;  2LPX A;  4GY9 A;  3P0L A;  2MOU A;  4JHG A;  4DSC A;  4QDF B;  4A80 A;  5C9Y A;  4MAP A;  3KL1 A;  1LN3 A;  4IHR A;  3TFZ A;  2LEQ A;  3OTL A;  3TVQ A;  4JHI A;  4NCA A;  3TGO C;  5I9J A;  4M9B A;  2E3N A;  5JNN A;  3UJL A;  4JHY A;  3Q64 A;  2K5G A;  2IL5 A;  2M89 A;  3QN1 A;  4N0G C;  4Q0K A;  4C9I A;  2A1L A;  1T27 A;  1BTV A;  2QIM A;  3NMV A;  1VJH A;  2E3M A;  3WG8 A;  4A81 A;  4IGX A;  4WVO A;  3HK2 A;  3P9V A;  3RT0 C;  1X53 A;  3PU2 A;  3HJF A;  5AMW A;  2I9Y A;  3GB4 A;  3GKE A;  2LAK A;  2KF2 A;  4IGY A;  2KCZ A;  4IGW A;  4REI A;  2LCG A;  4C9C A;  1TXC A;  2LF2 A;  3TVR A;  1H2O A;  5I8F A;  4BKC A;  2FFS A;  2L8O A;  2PCS A;  1E09 A;  4JHH A;  1XFS A;  2NS9 A;  3KDI A;  3R6P A;  4JDA A;  2L65 A;  3UID A;  2WQL A;  3NS2 A;  4XRT A;  2E3P A;  4A86 A;  2GKD A;  1IFV A;  4FPW A;  4C94 A;  3KB0 A;  4REH A;  2REZ A;  4JDL A;  5E4D A;  3JRS A;  4KPY A;  1QMR A;  4IH0 A;  4IH2 A;  4MNS A;  3KAZ A;  4A8U A;  1BV1 A;  3C0V A;  1EM2 A;  3GTS A;  4NCB A;  3KAY A;  3NMT A;  3Q63 A;  2E3O A;  3QSZ A;  3F08 A;  3NR4 A;  2QPV A;  1LN2 A;  2RER A;  4QIP A;  3UQH A;  1XN5 A;  3W9R A;  3K90 A;  3TL1 A;  3OH8 A;  2N4B A;  3H3T A;  2E3Q A;  3HM9 A;  4QDC A;  2D4R A;  2L9P A;  3P51 A;  4PSB A;  1TW0 A;  3H3Q A;  3IJT A;  3NEG A;  3Q6A A;  4QDF A;  1FM4 A;  3HO1 A;  4N76 A;  4E6F A;  1FSK A;  3JRQ B;  3GL0 A;  2FLH A;  4A84 A;  3KLX A;  4MA6 A;  2LAF A;  2KEW A;  4REJ A;  4XRW A;  4Y31 A;  3CNW A;  5E46 A;  2ZYL A;  3NMN A;  4A85 A;  3GTE A;  3NEF A;  4LA7 A;  4R7K A;  3FO5 A;  3NMH A;  3OJI A;  2KTE A;  3KDJ A;  2LE1 A;  3NMP A;  4BK7 A;  4N47 A;  3ELI A;  5JO2 A;  2E3S A;  1XDF A;  4A87 A;  3HXM A;  3K3K A;  1B6F A;  2VQ5 A;  4N41 A;  3NJ0 A;  4N3E A;  3H3R A;  2BK0 A;  3RT2 A;  4B9R A;  3GOB A;  3F73 A;  1LLT A;  2YH6 A;  2LUZ A;  4A88 A;  3KB3 A;  2Z9Y A;  1JSS A;  4QDD A;  1LN1 A;  4QCK A;  3GGN A;  3KDH A;  2NN5 A;  4LGA A;  1Z94 A;  2LGH A;  3ZVU A;  4M9W A;  5EKQ C;  3OQU A;  4RYV A;  3NI8 A;  2E3R A;  2K7H A;  1UW5 A;  2VNE A;  3E85 A;  3RD6 A;  2N4A A;  3W9K A;  4BK6 A;  3H3S A;  3NJ1 A;  2PSO A;  2EJX A;  4OIC A;  1XN6 A;  4LG5 A;  4A8G A;  4DS8 A;  3IE5 A;  4BKD A;  4BTZ A;  4DSB A;  5JO1 A;  4IGV A;  3DLH A;  3DLB A;  2LDK A;  3GL2 A;  3NQN A;  4Z3L A;  1ICX A;  2LIO A;  1T17 A;  2M47 A;  3PUT A;  5E4B A;  5BRL A;  1XUV A;  2R55 A;  3NJO A;  4LGB A;  4A83 A;  2Q3Q A;  3HVR A;  2RES A;  2Z9Z A;  5E4M A;  4A8V A;  1ZXF A; 
#chains in the Genus database with same CATH homology
 1KCM A;  2LPX A;  4GY9 A;  3P0L A;  2MOU A;  4JHG A;  4DSC A;  4QDF B;  4A80 A;  5C9Y A;  4MAP A;  3KL1 A;  1LN3 A;  4IHR A;  3TFZ A;  2LEQ A;  3OTL A;  3TVQ A;  4JHI A;  4NCA A;  3TGO C;  5I9J A;  4M9B A;  2E3N A;  5JNN A;  3UJL A;  4JHY A;  3Q64 A;  2K5G A;  2IL5 A;  2M89 A;  3QN1 A;  4N0G C;  4Q0K A;  4C9I A;  2A1L A;  1T27 A;  1BTV A;  2QIM A;  3NMV A;  1VJH A;  2E3M A;  3WG8 A;  4A81 A;  4IGX A;  4WVO A;  3HK2 A;  3P9V A;  3RT0 C;  1X53 A;  3PU2 A;  3HJF A;  5AMW A;  2I9Y A;  3GB4 A;  3GKE A;  2LAK A;  2KF2 A;  4IGY A;  2KCZ A;  4IGW A;  4REI A;  2LCG A;  4C9C A;  1TXC A;  2LF2 A;  3TVR A;  1H2O A;  5I8F A;  4BKC A;  2FFS A;  2L8O A;  2PCS A;  1E09 A;  4JHH A;  1XFS A;  2NS9 A;  3KDI A;  3R6P A;  4JDA A;  2L65 A;  3UID A;  2WQL A;  3NS2 A;  4XRT A;  2E3P A;  4A86 A;  2GKD A;  1IFV A;  4FPW A;  4C94 A;  3KB0 A;  4REH A;  2REZ A;  4JDL A;  5E4D A;  3JRS A;  4KPY A;  1QMR A;  4IH0 A;  4IH2 A;  4MNS A;  3KAZ A;  4A8U A;  1BV1 A;  3C0V A;  1EM2 A;  3GTS A;  4NCB A;  3KAY A;  3NMT A;  3Q63 A;  2E3O A;  3QSZ A;  3F08 A;  3NR4 A;  2QPV A;  1LN2 A;  2RER A;  4QIP A;  3UQH A;  1XN5 A;  3W9R A;  3K90 A;  3TL1 A;  3OH8 A;  2N4B A;  3H3T A;  2E3Q A;  3HM9 A;  4QDC A;  2D4R A;  2L9P A;  3P51 A;  4PSB A;  1TW0 A;  3H3Q A;  3IJT A;  3NEG A;  3Q6A A;  4QDF A;  1FM4 A;  3HO1 A;  4N76 A;  4E6F A;  1FSK A;  3JRQ B;  3GL0 A;  2FLH A;  4A84 A;  3KLX A;  4MA6 A;  2LAF A;  2KEW A;  4REJ A;  4XRW A;  4Y31 A;  3CNW A;  5E46 A;  2ZYL A;  3NMN A;  4A85 A;  3GTE A;  3NEF A;  4LA7 A;  4R7K A;  3FO5 A;  3NMH A;  3OJI A;  2KTE A;  3KDJ A;  2LE1 A;  3NMP A;  4BK7 A;  4N47 A;  3ELI A;  5JO2 A;  2E3S A;  1XDF A;  4A87 A;  3HXM A;  3K3K A;  1B6F A;  2VQ5 A;  4N41 A;  3NJ0 A;  4N3E A;  3H3R A;  2BK0 A;  3RT2 A;  4B9R A;  3GOB A;  3F73 A;  1LLT A;  2YH6 A;  2LUZ A;  4A88 A;  3KB3 A;  2Z9Y A;  1JSS A;  4QDD A;  1LN1 A;  4QCK A;  3GGN A;  3KDH A;  2NN5 A;  4LGA A;  1Z94 A;  2LGH A;  3ZVU A;  4M9W A;  5EKQ C;  3OQU A;  4RYV A;  3NI8 A;  2E3R A;  2K7H A;  1UW5 A;  2VNE A;  3E85 A;  3RD6 A;  2N4A A;  3W9K A;  4BK6 A;  3H3S A;  3NJ1 A;  2PSO A;  2EJX A;  4OIC A;  1XN6 A;  4LG5 A;  4A8G A;  4DS8 A;  3IE5 A;  4BKD A;  4BTZ A;  4DSB A;  5JO1 A;  4IGV A;  3DLH A;  3DLB A;  2LDK A;  3GL2 A;  3NQN A;  4Z3L A;  1ICX A;  2LIO A;  1T17 A;  2M47 A;  3PUT A;  5E4B A;  5BRL A;  1XUV A;  2R55 A;  3NJO A;  4LGB A;  4A83 A;  2Q3Q A;  3HVR A;  2RES A;  2Z9Z A;  5E4M A;  4A8V A;  1ZXF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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