4L1FA

Electron transferring flavoprotein of acidaminococcus fermentans: towards a mechanism of flavin-based electron bifurcation
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
380
structure length
380
Chain Sequence
MDFNLTEDQQMIKDMAAEFAEKFLAPTVEERDKAHIWDRKLIDKMGEAGFCGICFPEEYGGMGLDVLSYILAVEELSKVDDGTGITLSANVSLCATPIYMFGTEEQKQKYLAPIAEGTHVGAFGLTEPSAGTDASAQQTTAVLKGDKYILNGSKIFITNGKEADTYVVFAMTDKSQGVHGISAFILEKGMPGFRFGKIEDKMGGHTSITAELIFEDCEVPKENLLGKEGEGFKIAMETLDGGRIGVAAQALGIAEGALAAAVKYSKEREQFGRSISKFQALQFMMADMATKIEAARYLVYHAAMLKNEGKPYSEAAAMAKCFASDVAMEVTTDAVQIFGGYGYTVDYPAERYMRNAKITQIYEGTNQVMRIVTSRALLRD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Acyl-CoA dehydrogenase domain protein
publication title Studies on the Mechanism of Electron Bifurcation Catalyzed by Electron Transferring Flavoprotein (Etf) and Butyryl-CoA Dehydrogenase (Bcd) of Acidaminococcus fermentans.
pubmed doi rcsb
total genus 149
structure length 380
sequence length 380
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4l1fA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4l1fA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4l1fA02
2C0UA 3M9VA 1UDYA 4X28A 4G5EA 3HWCA 3MDEA 4ZXVA 2E80A 2J7AA 2YYMA 2CX9A 2ZO5A 3BNGA 1SIRA 4P13A 4HR3A 2PG0A 2JBTA 2Z1QA 2VIGA 1JQIA 4Q4UA 2YYGA 2RFQA 1EGDA 3NF4A 3MDDA 2IX6A 3BNFA 3S7WA 1T9GA 3LGQA 5K3GA 2WBIA 3P4TA 1FS9A 3AFFA 3D9DA 4KTOA 3X0XA 2VR0A 1QDBA 3UU9A 1SIQA 3MPIA 3BNJA 3SCEA 2E81A 1FS8A 2YYJA 2YYLA 4X28C 1W07A 4OO2A 4Q17A 1R2JA 4WJYA 2D29A 3EONA 4O5MA 3FO3A 4DOYA 1OAHA 3X0YA 2RDZA 3MPJA 3OWAA 4Q0TA 2R0NA 2REHA 5K3HA 3SWOA 2UXWA 4U83A 4XVXA 3AFEA 4N5FA 3R7KA 3D9FA 3II9A 1RX0A 3D1IA 3F29A 4IRNA 1EGCA 4L1FA 2A1TA 3PFDA 5K3JA 3D9GA 3OIBA 2YYIA 2DDHA 3D9EA 4L3XA 1U8VA 2JBSA 3TORA 1UKWA 3GNCA 3UBRA 3MXLA 2YYKA 4L38A 3RKHA 4KCFA 4Q1OA 3SXQA 4Q5CA 4ZYJA 4Q5BA 4JEKA 1GU6A 4RM7A 4IV6A 2RF7A 3FCJA 4L3ZA 2FONA 3MKHA 2OR0A 3GM6A 3OWMA 5K3IA 3B96A 2JIFA 3EOMA 2ZAFA 3TTBA 4NXLA 2C12A 3L1TA 2IX5A 2JBRA 1IVHA 3LG1A 4W9UA 3D6BA 3GQTA 4M9AA 3SF6A 1IS2A 1FS7A 3BNHA 2OT4A 2DVLA 4L3YA 1WS9A 2EBAA 3MMOA 2R0MA 1EGEA 1BUCA
chains in the Genus database with same CATH superfamily
2C0UA 3CE2A 3M9VA 4LQQB 1UDYA 4X28A 1GJVA 4G5EA 3HWCA 3MDEA 4ZXVA 2E80A 2F6LA 2J7AA 2YYMA 4MP7A 2CX9A 4JIOA 3VADA 2ZO5A 2CJ4A 3BNGA 2LFWA 3TZ2A 1SIRA 1SK6A 4P13A 4HR3A 2PG0A 2JBTA 2CJ6A 4V25A 2XS1A 2EBFX 4H85A 2Z1QA 2VIGA 1GKXA 1JQIA 3C2PA 4H81A 4Q4UA 2YYGA 2BU6A 2RFQA 3U33A 2OEVA 2AZEA 4QICA 5BRKA 1EGDA 3NF4A 3MDDA 1X8ZA 2IX6A 2R02A 4LQSB 2Q8IA 2CJ8A 3BNFA 1T9GA 5BRMA 3S7WA 3VKHA 4H7QA 3LGQA 5K3GA 2WBIA 3P4TA 1FS9A 4E00A 3AFFA 3D9DA 2CJ5A 4KTOA 3X0XA 2R03A 1LVCA 2VR0A 4KSAA 3Q22A 3X29A 3C46A 1QDBA 2BU7A 4E02A 3UU9A 3VKGA 1K93A 2BTZA 1SIQA 3MPIA 3BNJA 2Q8FA 3SCEA 2E81A 4AKIA 5M4MA 4FF3A 4AI6A 5B5VA 5B5WA 1FS8A 1Y0VA 2YYJA 2CJ7A 4HKRA 3CRKA 2YYLA 1XFWA 4X28C 3TZ0A 1PK0A 5M4KA 1W07A 4OO2A 4Q17A 2Q8GA 1R2JA 1K90A 2R05A 4P79A 2D29A 3EONA 1Y8PA 4O5MA 4MP2A 4MPNA 1GKZA 4WJYA 3FO3A 5M4NA 4FF4A 4AKGA 4DOYA 2BU2A 1OAHA 3X0YA 3Q24A 4KSFA 2RDZA 3MPJA 5GJVE 3Q0AA 1R3BA 3OWAA 4KS9A 4G97A 1XFUA 4Q0TA 2R0NA 1X90A 3D2RA 5EZ3A 2REHA 5K3HA 3SWOA 2UXWA 3CRLA 2FP2A 2PNRA 4U83A 4XVXA 3AFEA 4N5FA 1Y8OA 3R7KA 4DZYA 2VF1A 3D9FA 3II9A 2FP1A 1RX0A 2OEXA 2ZDXA 1XFVA 3D1IA 3F29A 4IRNA 1EGCA 5GJWE 3KMLA 4L1FA 2A1TA 3PFDA 5K3JA 3D9GA 3OIBA 2YYIA 2DDHA 1XFYA 3D9EA 2ZDYA 4L3XA 4V26A 4FF2A 1U8VA 3DJLA 5M4PA 1S26A 2JBSA 2BU5A 3TORA 1RJ1A 1PI1A 1UKWA 1X91A 4MPCA 3GNCA 3C3LA 3UBRA 3MXLA 2YYKA 4L38A 2YGWA 3RKHA 4KCFA 2QR4A 4Q1OA 3SXQA 1JM6A 4Q5CA 4ZYJA 4Q5BA 1RP3A 2Q8HA 4JEKA 1GU6A 4HKSA 4RM7A 1XFXA 4IV6A 1K8TA 3FCJA 1SC5A 2RF7A 2FONA 4L3ZA 3MKHA 4F0XA 1RJ4A 2EBHX 2PO4A 4FF1A 2OR0A 3GM6A 3OWMA 5K3IA 3Q23A 3B96A 1XFZA 2JIFA 3EOMA 3TZ4A 2ZAFA 4E01A 3TTBA 4NXLA 2C12A 3L1TA 2IX5A 2JBRA 1IVHA 3LG1A 2XS8A 4J1VA 4W9UA 3D6BA 3GQTA 4M9AA 3SF6A 1IS2A 1FS7A 1Y8NA 2E0AA 2XQRB 3N0RA 4JIZA 2EC5A 5J71A 3TZ5A 1XG2B 2BU8A 2OJQA 3BNHA 4FZ4A 2DVLA 2OT4A 4L3YA 2AO2A 2ZKJA 1WS9A 2GBBA 4MPEA 2EBAA 3MMOA 2HJNA 5B6BA 2R0MA 4AKHA 5J6AA 1EGEA 1BUCA
chains in the Genus database with same CATH topology
2C0UA 3M9VA 1UDYA 4X28A 4G5EA 3HWCA 3MDEA 4ZXVA 2E80A 2J7AA 2YYMA 2CX9A 2ZO5A 3BNGA 1SIRA 4P13A 4HR3A 2PG0A 2JBTA 2Z1QA 2VIGA 1JQIA 4Q4UA 2YYGA 2RFQA 1EGDA 3NF4A 3MDDA 2IX6A 3BNFA 3S7WA 1T9GA 3LGQA 5K3GA 2WBIA 3P4TA 1FS9A 3AFFA 3D9DA 4KTOA 3X0XA 2VR0A 1QDBA 3UU9A 1SIQA 3MPIA 3BNJA 3SCEA 2E81A 1FS8A 2YYJA 2YYLA 4X28C 1W07A 4OO2A 4Q17A 1R2JA 4WJYA 2D29A 3EONA 4O5MA 3FO3A 4DOYA 1OAHA 3X0YA 2RDZA 3MPJA 3OWAA 4Q0TA 2R0NA 2REHA 5K3HA 3SWOA 2UXWA 4U83A 4XVXA 3AFEA 4N5FA 3R7KA 3D9FA 3II9A 1RX0A 3D1IA 3F29A 4IRNA 1EGCA 4L1FA 2A1TA 3PFDA 5K3JA 3D9GA 3OIBA 2YYIA 2DDHA 3D9EA 4L3XA 1U8VA 2JBSA 3TORA 1UKWA 3GNCA 3UBRA 3MXLA 2YYKA 4L38A 3RKHA 4KCFA 4Q1OA 3SXQA 4Q5CA 4ZYJA 4Q5BA 4JEKA 1GU6A 4RM7A 4IV6A 2RF7A 3FCJA 4L3ZA 2FONA 3MKHA 2OR0A 3GM6A 3OWMA 5K3IA 3B96A 2JIFA 3EOMA 2ZAFA 3TTBA 4NXLA 2C12A 3L1TA 2IX5A 2JBRA 1IVHA 3LG1A 4W9UA 3D6BA 3GQTA 4M9AA 3SF6A 1IS2A 1FS7A 3BNHA 2OT4A 2DVLA 4L3YA 1WS9A 2EBAA 3MMOA 2R0MA 1EGEA 1BUCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C0U A;  3M9V A;  1UDY A;  4X28 A;  4G5E A;  3HWC A;  3MDE A;  4ZXV A;  2E80 A;  2J7A A;  2YYM A;  2CX9 A;  2ZO5 A;  3BNG A;  1SIR A;  4P13 A;  4HR3 A;  2PG0 A;  2JBT A;  2Z1Q A;  2VIG A;  1JQI A;  4Q4U A;  2YYG A;  2RFQ A;  1EGD A;  3NF4 A;  3MDD A;  2IX6 A;  3BNF A;  3S7W A;  1T9G A;  3LGQ A;  5K3G A;  2WBI A;  3P4T A;  1FS9 A;  3AFF A;  3D9D A;  4KTO A;  3X0X A;  2VR0 A;  1QDB A;  3UU9 A;  1SIQ A;  3MPI A;  3BNJ A;  3SCE A;  2E81 A;  1FS8 A;  2YYJ A;  2YYL A;  4X28 C;  1W07 A;  4OO2 A;  4Q17 A;  1R2J A;  4WJY A;  2D29 A;  3EON A;  4O5M A;  3FO3 A;  4DOY A;  1OAH A;  3X0Y A;  2RDZ A;  3MPJ A;  3OWA A;  4Q0T A;  2R0N A;  2REH A;  5K3H A;  3SWO A;  2UXW A;  4U83 A;  4XVX A;  3AFE A;  4N5F A;  3R7K A;  3D9F A;  3II9 A;  1RX0 A;  3D1I A;  3F29 A;  4IRN A;  1EGC A;  4L1F A;  2A1T A;  3PFD A;  5K3J A;  3D9G A;  3OIB A;  2YYI A;  2DDH A;  3D9E A;  4L3X A;  1U8V A;  2JBS A;  3TOR A;  1UKW A;  3GNC A;  3UBR A;  3MXL A;  2YYK A;  4L38 A;  3RKH A;  4KCF A;  4Q1O A;  3SXQ A;  4Q5C A;  4ZYJ A;  4Q5B A;  4JEK A;  1GU6 A;  4RM7 A;  4IV6 A;  2RF7 A;  3FCJ A;  4L3Z A;  2FON A;  3MKH A;  2OR0 A;  3GM6 A;  3OWM A;  5K3I A;  3B96 A;  2JIF A;  3EOM A;  2ZAF A;  3TTB A;  4NXL A;  2C12 A;  3L1T A;  2IX5 A;  2JBR A;  1IVH A;  3LG1 A;  4W9U A;  3D6B A;  3GQT A;  4M9A A;  3SF6 A;  1IS2 A;  1FS7 A;  3BNH A;  2OT4 A;  2DVL A;  4L3Y A;  1WS9 A;  2EBA A;  3MMO A;  2R0M A;  1EGE A;  1BUC A; 
#chains in the Genus database with same CATH topology
 2C0U A;  3CE2 A;  3M9V A;  4LQQ B;  1UDY A;  4X28 A;  1GJV A;  4G5E A;  3HWC A;  3MDE A;  4ZXV A;  2E80 A;  2F6L A;  2J7A A;  2YYM A;  4MP7 A;  2CX9 A;  4JIO A;  3VAD A;  2ZO5 A;  2CJ4 A;  3BNG A;  2LFW A;  3TZ2 A;  1SIR A;  1SK6 A;  4P13 A;  4HR3 A;  2PG0 A;  2JBT A;  2CJ6 A;  4V25 A;  2XS1 A;  2EBF X;  4H85 A;  2Z1Q A;  2VIG A;  1GKX A;  1JQI A;  3C2P A;  4H81 A;  4Q4U A;  2YYG A;  2BU6 A;  2RFQ A;  3U33 A;  2OEV A;  2AZE A;  4QIC A;  5BRK A;  1EGD A;  3NF4 A;  3MDD A;  1X8Z A;  2IX6 A;  2R02 A;  4LQS B;  2Q8I A;  2CJ8 A;  3BNF A;  1T9G A;  5BRM A;  3S7W A;  3VKH A;  4H7Q A;  3LGQ A;  5K3G A;  2WBI A;  3P4T A;  1FS9 A;  4E00 A;  3AFF A;  3D9D A;  2CJ5 A;  4KTO A;  3X0X A;  2R03 A;  1LVC A;  2VR0 A;  4KSA A;  3Q22 A;  3X29 A;  3C46 A;  1QDB A;  2BU7 A;  4E02 A;  3UU9 A;  3VKG A;  1K93 A;  2BTZ A;  1SIQ A;  3MPI A;  3BNJ A;  2Q8F A;  3SCE A;  2E81 A;  4AKI A;  5M4M A;  4FF3 A;  4AI6 A;  5B5V A;  5B5W A;  1FS8 A;  1Y0V A;  2YYJ A;  2CJ7 A;  4HKR A;  3CRK A;  2YYL A;  1XFW A;  4X28 C;  3TZ0 A;  1PK0 A;  5M4K A;  1W07 A;  4OO2 A;  4Q17 A;  2Q8G A;  1R2J A;  1K90 A;  2R05 A;  4P79 A;  2D29 A;  3EON A;  1Y8P A;  4O5M A;  4MP2 A;  4MPN A;  1GKZ A;  4WJY A;  3FO3 A;  5M4N A;  4FF4 A;  4AKG A;  4DOY A;  2BU2 A;  1OAH A;  3X0Y A;  3Q24 A;  4KSF A;  2RDZ A;  3MPJ A;  5GJV E;  3Q0A A;  1R3B A;  3OWA A;  4KS9 A;  4G97 A;  1XFU A;  4Q0T A;  2R0N A;  1X90 A;  3D2R A;  5EZ3 A;  2REH A;  5K3H A;  3SWO A;  2UXW A;  3CRL A;  2FP2 A;  2PNR A;  4U83 A;  4XVX A;  3AFE A;  4N5F A;  1Y8O A;  3R7K A;  4DZY A;  2VF1 A;  3D9F A;  3II9 A;  2FP1 A;  1RX0 A;  2OEX A;  2ZDX A;  1XFV A;  3D1I A;  3F29 A;  4IRN A;  1EGC A;  5GJW E;  3KML A;  4L1F A;  2A1T A;  3PFD A;  5K3J A;  3D9G A;  3OIB A;  2YYI A;  2DDH A;  1XFY A;  3D9E A;  2ZDY A;  4L3X A;  4V26 A;  4FF2 A;  1U8V A;  3DJL A;  5M4P A;  1S26 A;  2JBS A;  2BU5 A;  3TOR A;  1RJ1 A;  1PI1 A;  1UKW A;  1X91 A;  4MPC A;  3GNC A;  3C3L A;  3UBR A;  3MXL A;  2YYK A;  4L38 A;  2YGW A;  3RKH A;  4KCF A;  2QR4 A;  4Q1O A;  3SXQ A;  1JM6 A;  4Q5C A;  4ZYJ A;  4Q5B A;  1RP3 A;  2Q8H A;  4JEK A;  1GU6 A;  4HKS A;  4RM7 A;  1XFX A;  4IV6 A;  1K8T A;  3FCJ A;  1SC5 A;  2RF7 A;  2FON A;  4L3Z A;  3MKH A;  4F0X A;  1RJ4 A;  2EBH X;  2PO4 A;  4FF1 A;  2OR0 A;  3GM6 A;  3OWM A;  5K3I A;  3Q23 A;  3B96 A;  1XFZ A;  2JIF A;  3EOM A;  3TZ4 A;  2ZAF A;  4E01 A;  3TTB A;  4NXL A;  2C12 A;  3L1T A;  2IX5 A;  2JBR A;  1IVH A;  3LG1 A;  2XS8 A;  4J1V A;  4W9U A;  3D6B A;  3GQT A;  4M9A A;  3SF6 A;  1IS2 A;  1FS7 A;  1Y8N A;  2E0A A;  2XQR B;  3N0R A;  4JIZ A;  2EC5 A;  5J71 A;  3TZ5 A;  1XG2 B;  2BU8 A;  2OJQ A;  3BNH A;  4FZ4 A;  2DVL A;  2OT4 A;  4L3Y A;  2AO2 A;  2ZKJ A;  1WS9 A;  2GBB A;  4MPE A;  2EBA A;  3MMO A;  2HJN A;  5B6B A;  2R0M A;  4AKH A;  5J6A A;  1EGE A;  1BUC A; 
#chains in the Genus database with same CATH homology
 2C0U A;  3M9V A;  1UDY A;  4X28 A;  4G5E A;  3HWC A;  3MDE A;  4ZXV A;  2E80 A;  2J7A A;  2YYM A;  2CX9 A;  2ZO5 A;  3BNG A;  1SIR A;  4P13 A;  4HR3 A;  2PG0 A;  2JBT A;  2Z1Q A;  2VIG A;  1JQI A;  4Q4U A;  2YYG A;  2RFQ A;  1EGD A;  3NF4 A;  3MDD A;  2IX6 A;  3BNF A;  3S7W A;  1T9G A;  3LGQ A;  5K3G A;  2WBI A;  3P4T A;  1FS9 A;  3AFF A;  3D9D A;  4KTO A;  3X0X A;  2VR0 A;  1QDB A;  3UU9 A;  1SIQ A;  3MPI A;  3BNJ A;  3SCE A;  2E81 A;  1FS8 A;  2YYJ A;  2YYL A;  4X28 C;  1W07 A;  4OO2 A;  4Q17 A;  1R2J A;  4WJY A;  2D29 A;  3EON A;  4O5M A;  3FO3 A;  4DOY A;  1OAH A;  3X0Y A;  2RDZ A;  3MPJ A;  3OWA A;  4Q0T A;  2R0N A;  2REH A;  5K3H A;  3SWO A;  2UXW A;  4U83 A;  4XVX A;  3AFE A;  4N5F A;  3R7K A;  3D9F A;  3II9 A;  1RX0 A;  3D1I A;  3F29 A;  4IRN A;  1EGC A;  4L1F A;  2A1T A;  3PFD A;  5K3J A;  3D9G A;  3OIB A;  2YYI A;  2DDH A;  3D9E A;  4L3X A;  1U8V A;  2JBS A;  3TOR A;  1UKW A;  3GNC A;  3UBR A;  3MXL A;  2YYK A;  4L38 A;  3RKH A;  4KCF A;  4Q1O A;  3SXQ A;  4Q5C A;  4ZYJ A;  4Q5B A;  4JEK A;  1GU6 A;  4RM7 A;  4IV6 A;  2RF7 A;  3FCJ A;  4L3Z A;  2FON A;  3MKH A;  2OR0 A;  3GM6 A;  3OWM A;  5K3I A;  3B96 A;  2JIF A;  3EOM A;  2ZAF A;  3TTB A;  4NXL A;  2C12 A;  3L1T A;  2IX5 A;  2JBR A;  1IVH A;  3LG1 A;  4W9U A;  3D6B A;  3GQT A;  4M9A A;  3SF6 A;  1IS2 A;  1FS7 A;  3BNH A;  2OT4 A;  2DVL A;  4L3Y A;  1WS9 A;  2EBA A;  3MMO A;  2R0M A;  1EGE A;  1BUC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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